RNA–Protein interactions for RNA: ENST00000539941.6

COPS3-212, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2 BASIC

Gene COPS3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-212ENST00000539941 RSPH6AQ9H0K4 717 aa22.14■■□□□ 1.14
COPS3-212ENST00000539941 RNF123Q5XPI4 1314 aa22.14■■□□□ 1.14
COPS3-212ENST00000539941 E9PSI1 815 aa22.14■■□□□ 1.13
COPS3-212ENST00000539941 SLFN5Q08AF3 891 aa22.14■■□□□ 1.13
COPS3-212ENST00000539941 FKBP8Q14318 412 aa22.14■■□□□ 1.13
COPS3-212ENST00000539941 NEFMP07197 916 aa22.13■■□□□ 1.13
COPS3-212ENST00000539941 KRT28Q7Z3Y7 464 aa22.13■■□□□ 1.13
COPS3-212ENST00000539941 TRMT2AQ8IZ69 625 aaKnown RBP22.13■■□□□ 1.13
COPS3-212ENST00000539941 RTL1A6NKG5 1358 aa22.12■■□□□ 1.13
COPS3-212ENST00000539941 WDR63Q8IWG1 891 aa22.12■■□□□ 1.13
COPS3-212ENST00000539941 EIF4A2Q14240 407 aaKnown RBP22.11■■□□□ 1.13
COPS3-212ENST00000539941 DUSP27Q5VZP5 1158 aa22.11■■□□□ 1.13
COPS3-212ENST00000539941 KCNH5Q8NCM2 988 aa22.11■■□□□ 1.13
COPS3-212ENST00000539941 NFAT5O94916 1531 aa22.11■■□□□ 1.13
COPS3-212ENST00000539941 RGPD1P0DJD0 1748 aa22.11■■□□□ 1.13
COPS3-212ENST00000539941 ERICH6BQ5W0A0 696 aa22.11■■□□□ 1.13
COPS3-212ENST00000539941 SLIT3O75094 1523 aa22.1■■□□□ 1.13
COPS3-212ENST00000539941 NPHP3Q7Z494 1330 aa22.1■■□□□ 1.13
COPS3-212ENST00000539941 SOX12O15370 315 aa22.1■■□□□ 1.13
COPS3-212ENST00000539941 TMPOP42166 694 aaKnown RBP22.1■■□□□ 1.13
COPS3-212ENST00000539941 AMPHP49418 695 aa22.1■■□□□ 1.13
COPS3-212ENST00000539941 NUTM2GQ5VZR2 741 aa22.1■■□□□ 1.13
COPS3-212ENST00000539941 RCAN3Q9UKA8 241 aa22.1■■□□□ 1.13
COPS3-212ENST00000539941 PRKAR2BP31323 418 aa22.09■■□□□ 1.13
COPS3-212ENST00000539941 HSP90AB2PQ58FF8 381 aa22.09■■□□□ 1.13
COPS3-212ENST00000539941 RRP7AQ9Y3A4 280 aaKnown RBP22.09■■□□□ 1.13
COPS3-212ENST00000539941 ALS2Q96Q42 1657 aa22.09■■□□□ 1.13
COPS3-212ENST00000539941 PHRF1Q9P1Y6 1649 aaKnown RBP22.09■■□□□ 1.13
COPS3-212ENST00000539941 ARHGEF10O15013 1369 aa22.08■■□□□ 1.12
COPS3-212ENST00000539941 USP19O94966 1318 aa22.08■■□□□ 1.12
COPS3-212ENST00000539941 NEUROD2Q15784 382 aa22.07■■□□□ 1.12
COPS3-212ENST00000539941 BRINP3Q76B58 766 aa22.07■■□□□ 1.12
COPS3-212ENST00000539941 LTN1O94822 1766 aa22.06■■□□□ 1.12
COPS3-212ENST00000539941 SOCS7O14512 581 aa22.05■■□□□ 1.12
COPS3-212ENST00000539941 HMOX1P09601 288 aa22.05■■□□□ 1.12
COPS3-212ENST00000539941 HOXC9P31274 260 aa22.05■■□□□ 1.12
COPS3-212ENST00000539941 XPCQ01831 940 aaPredicted RBP22.05■■□□□ 1.12
COPS3-212ENST00000539941 ERICH6Q7L0X2 663 aa22.04■■□□□ 1.12
COPS3-212ENST00000539941 RGS17Q9UGC6 210 aaPredicted RBP22.04■■□□□ 1.12
COPS3-212ENST00000539941 PXDNQ92626 1479 aa22.03■■□□□ 1.12
COPS3-212ENST00000539941 NFE2L2Q16236 605 aa22.03■■□□□ 1.12
COPS3-212ENST00000539941 SPINK5Q9NQ38 1064 aaPredicted RBP22.03■■□□□ 1.12
COPS3-212ENST00000539941 IL16Q14005 1332 aa22.03■■□□□ 1.12
COPS3-212ENST00000539941 RIPK4P57078 832 aa22.02■■□□□ 1.12
COPS3-212ENST00000539941 TRIM35Q9UPQ4 493 aa22.02■■□□□ 1.12
COPS3-212ENST00000539941 TNS3Q68CZ2 1445 aa22.02■■□□□ 1.12
COPS3-212ENST00000539941 IP6K1Q92551 441 aa22.01■■□□□ 1.11
COPS3-212ENST00000539941 KDRP35968 1356 aa22.01■■□□□ 1.11
COPS3-212ENST00000539941 GCP02774 474 aa22.01■■□□□ 1.11
COPS3-212ENST00000539941 SULT6B1Q6IMI4 303 aa22.01■■□□□ 1.11
COPS3-212ENST00000539941 MYH16Q9H6N6 1097 aa22.01■■□□□ 1.11
COPS3-212ENST00000539941 PHLPP1O60346 1717 aa22■■□□□ 1.11
COPS3-212ENST00000539941 IGSF1Q8N6C5 1336 aa22■■□□□ 1.11
COPS3-212ENST00000539941 PHACTR3Q96KR7 559 aa22■■□□□ 1.11
COPS3-212ENST00000539941 JCADQ9P266 1359 aa21.99■■□□□ 1.11
COPS3-212ENST00000539941 RRP1P56182 461 aaKnown RBP21.99■■□□□ 1.11
COPS3-212ENST00000539941 LMOD2Q6P5Q4 547 aa21.99■■□□□ 1.11
COPS3-212ENST00000539941 LMOD3Q0VAK6 560 aa21.98■■□□□ 1.11
COPS3-212ENST00000539941 COL16A1Q07092 1604 aaPredicted RBP21.98■■□□□ 1.11
COPS3-212ENST00000539941 ARHGEF25Q86VW2 580 aa21.98■■□□□ 1.11
COPS3-212ENST00000539941 AEBP1Q8IUX7 1158 aa21.97■■□□□ 1.11
COPS3-212ENST00000539941 SPATA31A3Q5VYP0 1347 aa21.97■■□□□ 1.11
COPS3-212ENST00000539941 AHDC1Q5TGY3 1603 aaPredicted RBP21.96■■□□□ 1.11
COPS3-212ENST00000539941 CALD1Q05682 793 aaKnown RBP21.96■■□□□ 1.11
COPS3-212ENST00000539941 EYA1Q99502 592 aa21.96■■□□□ 1.11
COPS3-212ENST00000539941 IRX6P78412 446 aaPredicted RBP21.95■■□□□ 1.1
COPS3-212ENST00000539941 DDX17Q92841 729 aaKnown RBP21.95■■□□□ 1.1
COPS3-212ENST00000539941 DLG5Q8TDM6 1919 aa21.94■■□□□ 1.1
COPS3-212ENST00000539941 SOS2Q07890 1332 aaPredicted RBP21.94■■□□□ 1.1
COPS3-212ENST00000539941 ABCC6O95255 1503 aa21.92■■□□□ 1.1
COPS3-212ENST00000539941 CRYBG1Q9Y4K1 1723 aa21.92■■□□□ 1.1
COPS3-212ENST00000539941 CT47B1P0C2W7 299 aaPredicted RBP21.91■■□□□ 1.1
COPS3-212ENST00000539941 NHSL1Q5SYE7 1610 aa21.91■■□□□ 1.1
COPS3-212ENST00000539941 SPATA31A6Q5VVP1 1343 aa21.89■■□□□ 1.1
COPS3-212ENST00000539941 POTEAQ6S8J7 498 aa21.89■■□□□ 1.1
COPS3-212ENST00000539941 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.89■■□□□ 1.1
COPS3-212ENST00000539941 FANCIQ9NVI1 1328 aa21.89■■□□□ 1.09
COPS3-212ENST00000539941 PPP4R2Q9NY27 417 aa21.88■■□□□ 1.09
COPS3-212ENST00000539941 LRRC59Q96AG4 307 aaKnown RBP21.88■■□□□ 1.09
COPS3-212ENST00000539941 NCAPD2Q15021 1401 aa21.87■■□□□ 1.09
COPS3-212ENST00000539941 GAS2L2Q8NHY3 880 aa21.87■■□□□ 1.09
COPS3-212ENST00000539941 LTV1Q96GA3 475 aaPredicted RBP21.87■■□□□ 1.09
COPS3-212ENST00000539941 IFT57Q9NWB7 429 aa21.86■■□□□ 1.09
COPS3-212ENST00000539941 CPDO75976 1380 aa21.86■■□□□ 1.09
COPS3-212ENST00000539941 CAMTA1Q9Y6Y1 1673 aa21.86■■□□□ 1.09
COPS3-212ENST00000539941 ZBTB7CA1YPR0 619 aa21.85■■□□□ 1.09
COPS3-212ENST00000539941 GNAI1P63096 354 aa21.85■■□□□ 1.09
COPS3-212ENST00000539941 LRP6O75581 1613 aa21.85■■□□□ 1.09
COPS3-212ENST00000539941 PRKCSHP14314 528 aaPredicted RBP21.85■■□□□ 1.09
COPS3-212ENST00000539941 COL18A1P39060 1754 aa21.83■■□□□ 1.09
COPS3-212ENST00000539941 HTATSF1O43719 755 aaKnown RBP21.82■■□□□ 1.08
COPS3-212ENST00000539941 ZNF853P0CG23 659 aa21.82■■□□□ 1.08
COPS3-212ENST00000539941 MTHFSDQ2M296 383 aaKnown RBP21.82■■□□□ 1.08
COPS3-212ENST00000539941 NBPF6Q5VWK0 638 aa21.82■■□□□ 1.08
COPS3-212ENST00000539941 ANKRD24Q8TF21 1146 aa21.82■■□□□ 1.08
COPS3-212ENST00000539941 TSR2Q969E8 191 aaKnown RBP21.82■■□□□ 1.08
COPS3-212ENST00000539941 NBPF4Q96M43 638 aa21.82■■□□□ 1.08
COPS3-212ENST00000539941 ZC3H6P61129 1189 aaKnown RBP21.82■■□□□ 1.08
COPS3-212ENST00000539941 CFAP44Q96MT7 982 aa21.82■■□□□ 1.08
COPS3-212ENST00000539941 NUTM2BA6NNL0 878 aaPredicted RBP21.81■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms