RNA–Protein interactions for RNA: ENST00000539941.6

COPS3-212, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2 BASIC

Gene COPS3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-212ENST00000539941 NISCHQ9Y2I1 1504 aa38.3■■■■□ 3.72
COPS3-212ENST00000539941 CCDC180Q9P1Z9 1646 aa33.48■■■□□ 2.95
COPS3-212ENST00000539941 ABCC9O60706 1549 aa32.58■■■□□ 2.81
COPS3-212ENST00000539941 ZCCHC6Q5VYS8 1495 aaKnown RBP32.19■■■□□ 2.74
COPS3-212ENST00000539941 DCAF1Q9Y4B6 1507 aa31.76■■■□□ 2.68
COPS3-212ENST00000539941 DCAF8L2P0C7V8 631 aa31.46■■■□□ 2.63
COPS3-212ENST00000539941 MYO15BQ96JP2 1530 aa31.42■■■□□ 2.62
COPS3-212ENST00000539941 NACADO15069 1562 aa31.17■■■□□ 2.58
COPS3-212ENST00000539941 RB1CC1Q8TDY2 1594 aa31.1■■■□□ 2.57
COPS3-212ENST00000539941 SHROOM4Q9ULL8 1493 aa31.06■■■□□ 2.56
COPS3-212ENST00000539941 SCRIBQ14160 1630 aa30.66■■■□□ 2.5
COPS3-212ENST00000539941 PABPN1Q86U42 306 aaKnown RBP eCLIP30.48■■■□□ 2.47
COPS3-212ENST00000539941 DNAJC5BQ9UF47 199 aa30.4■■■□□ 2.46
COPS3-212ENST00000539941 UNC13AQ9UPW8 1703 aa30.38■■■□□ 2.45
COPS3-212ENST00000539941 BICRAQ9NZM4 1560 aa30.26■■■□□ 2.43
COPS3-212ENST00000539941 SUPT5HO00267 1087 aaKnown RBP29.89■■■□□ 2.38
COPS3-212ENST00000539941 CECR2Q9BXF3 1484 aa29.69■■■□□ 2.34
COPS3-212ENST00000539941 RSF1Q96T23 1441 aaPredicted RBP29.67■■■□□ 2.34
COPS3-212ENST00000539941 BAZ1AQ9NRL2 1556 aaPredicted RBP29.6■■■□□ 2.33
COPS3-212ENST00000539941 MROH2BQ7Z745 1585 aa29.54■■■□□ 2.32
COPS3-212ENST00000539941 SMARCA4P51532 1647 aa29.45■■■□□ 2.31
COPS3-212ENST00000539941 EIF4G1Q04637 1599 aaKnown RBP29.44■■■□□ 2.3
COPS3-212ENST00000539941 CC2D2AQ9P2K1 1620 aa29.41■■■□□ 2.3
COPS3-212ENST00000539941 WIZO95785 1651 aa29.28■■■□□ 2.28
COPS3-212ENST00000539941 PEG3Q9GZU2 1588 aa29.15■■■□□ 2.26
COPS3-212ENST00000539941 TOP2AP11388 1531 aaKnown RBP29.06■■■□□ 2.24
COPS3-212ENST00000539941 SMARCA2P51531 1590 aa28.99■■■□□ 2.23
COPS3-212ENST00000539941 ATAD2BQ9ULI0 1458 aa28.96■■■□□ 2.23
COPS3-212ENST00000539941 BAZ1BQ9UIG0 1483 aaKnown RBP28.8■■■□□ 2.2
COPS3-212ENST00000539941 NCAPD3P42695 1498 aa28.75■■■□□ 2.19
COPS3-212ENST00000539941 HMGXB3Q12766 1538 aa28.73■■■□□ 2.19
COPS3-212ENST00000539941 CCDC88BA6NC98 1476 aa28.71■■■□□ 2.19
COPS3-212ENST00000539941 CHIC1Q5VXU3 224 aa28.67■■■□□ 2.18
COPS3-212ENST00000539941 TRIM41Q8WV44 630 aa28.18■■■□□ 2.1
COPS3-212ENST00000539941 NESP48681 1621 aa28.11■■■□□ 2.09
COPS3-212ENST00000539941 CFTRP13569 1480 aa28.09■■■□□ 2.09
COPS3-212ENST00000539941 ERCC6Q03468 1493 aa28.05■■■□□ 2.08
COPS3-212ENST00000539941 ABCC8Q09428 1581 aa28.05■■■□□ 2.08
COPS3-212ENST00000539941 PRDM2Q13029 1718 aa27.99■■■□□ 2.07
COPS3-212ENST00000539941 CADPSQ9ULU8 1353 aa27.98■■■□□ 2.07
COPS3-212ENST00000539941 WRNQ14191 1432 aaPredicted RBP eCLIP27.95■■■□□ 2.07
COPS3-212ENST00000539941 LAMC3Q9Y6N6 1575 aa27.9■■■□□ 2.06
COPS3-212ENST00000539941 CUX2O14529 1486 aa27.89■■■□□ 2.06
COPS3-212ENST00000539941 SYNJ1O43426 1573 aa27.8■■■□□ 2.04
COPS3-212ENST00000539941 PDS5BQ9NTI5 1447 aa27.77■■■□□ 2.04
COPS3-212ENST00000539941 TOP2BQ02880 1626 aa27.75■■■□□ 2.03
COPS3-212ENST00000539941 BIVM-ERCC5R4GMW8 1640 aa27.73■■■□□ 2.03
COPS3-212ENST00000539941 THOC2Q8NI27 1593 aaKnown RBP27.66■■■□□ 2.02
COPS3-212ENST00000539941 KIF21AQ7Z4S6 1674 aa27.66■■■□□ 2.02
COPS3-212ENST00000539941 FANCD2Q9BXW9 1451 aa27.66■■■□□ 2.02
COPS3-212ENST00000539941 CUX1P39880 1505 aa27.64■■■□□ 2.02
COPS3-212ENST00000539941 EEA1Q15075 1411 aa27.62■■■□□ 2.01
COPS3-212ENST00000539941 DNAJC5Q9H3Z4 198 aa27.62■■■□□ 2.01
COPS3-212ENST00000539941 FAM9AQ8IZU1 332 aaPredicted RBP27.56■■■□□ 2
COPS3-212ENST00000539941 SOGA1O94964 1423 aa27.53■■■□□ 2
COPS3-212ENST00000539941 CEP164Q9UPV0 1460 aa27.5■■□□□ 1.99
COPS3-212ENST00000539941 LOC105371045A0A1W2PR82 267 aa27.49■■□□□ 1.99
COPS3-212ENST00000539941 MRC2Q9UBG0 1479 aa27.48■■□□□ 1.99
COPS3-212ENST00000539941 DNMBPQ6XZF7 1577 aa27.45■■□□□ 1.98
COPS3-212ENST00000539941 RUSC2Q8N2Y8 1516 aa27.4■■□□□ 1.98
COPS3-212ENST00000539941 WDR62O43379 1518 aa27.39■■□□□ 1.98
COPS3-212ENST00000539941 CSRNP3Q8WYN3 585 aa27.37■■□□□ 1.97
COPS3-212ENST00000539941 TOPBP1Q92547 1522 aa27.37■■□□□ 1.97
COPS3-212ENST00000539941 FGD5Q6ZNL6 1462 aa27.34■■□□□ 1.97
COPS3-212ENST00000539941 URB2Q14146 1524 aaKnown RBP27.3■■□□□ 1.96
COPS3-212ENST00000539941 KIF27Q86VH2 1401 aa27.26■■□□□ 1.95
COPS3-212ENST00000539941 KIF21BO75037 1637 aa27.23■■□□□ 1.95
COPS3-212ENST00000539941 POLA1P09884 1462 aaPredicted RBP27.22■■□□□ 1.95
COPS3-212ENST00000539941 GOLGA3Q08378 1498 aa27.18■■□□□ 1.94
COPS3-212ENST00000539941 ABCA10Q8WWZ4 1543 aa27.15■■□□□ 1.94
COPS3-212ENST00000539941 EHMT2Q96KQ7 1210 aa27.09■■□□□ 1.93
COPS3-212ENST00000539941 TNIKQ9UKE5 1360 aa27.09■■□□□ 1.93
COPS3-212ENST00000539941 RAD54L2Q9Y4B4 1467 aa27.08■■□□□ 1.93
COPS3-212ENST00000539941 PRXQ9BXM0 1461 aa27.08■■□□□ 1.92
COPS3-212ENST00000539941 ERICH3Q5RHP9 1530 aa27.07■■□□□ 1.92
COPS3-212ENST00000539941 WDR97A6NE52 1622 aa27.06■■□□□ 1.92
COPS3-212ENST00000539941 RAPGEF2Q9Y4G8 1499 aa27■■□□□ 1.91
COPS3-212ENST00000539941 IGF1RP08069 1367 aa26.98■■□□□ 1.91
COPS3-212ENST00000539941 UBTFP17480 764 aaKnown RBP26.98■■□□□ 1.91
COPS3-212ENST00000539941 TARBP1Q13395 1621 aaKnown RBP26.96■■□□□ 1.91
COPS3-212ENST00000539941 ABCA5Q8WWZ7 1642 aa26.92■■□□□ 1.9
COPS3-212ENST00000539941 CEP162Q5TB80 1403 aa26.9■■□□□ 1.9
COPS3-212ENST00000539941 IFT140Q96RY7 1462 aa26.9■■□□□ 1.9
COPS3-212ENST00000539941 CARMIL1Q5VZK9 1371 aa26.86■■□□□ 1.89
COPS3-212ENST00000539941 ZNF608Q9ULD9 1512 aaPredicted RBP26.86■■□□□ 1.89
COPS3-212ENST00000539941 CUL7Q14999 1698 aa26.86■■□□□ 1.89
COPS3-212ENST00000539941 GAPVD1Q14C86 1478 aa26.84■■□□□ 1.89
COPS3-212ENST00000539941 TDRD9Q8NDG6 1382 aaKnown RBP26.81■■□□□ 1.88
COPS3-212ENST00000539941 OSCARQ8IYS5 282 aa26.79■■□□□ 1.88
COPS3-212ENST00000539941 CLIP1P30622 1438 aa26.72■■□□□ 1.87
COPS3-212ENST00000539941 PBRM1Q86U86 1689 aa26.7■■□□□ 1.86
COPS3-212ENST00000539941 AQRO60306 1485 aaKnown RBP eCLIP26.68■■□□□ 1.863e-7■■■■■ 36.6
COPS3-212ENST00000539941 GRIN2BQ13224 1484 aa26.65■■□□□ 1.86
COPS3-212ENST00000539941 EIF4G3O43432 1585 aaKnown RBP26.63■■□□□ 1.85
COPS3-212ENST00000539941 FHAD1B1AJZ9 1412 aa26.58■■□□□ 1.84
COPS3-212ENST00000539941 ADAMTS12P58397 1594 aa26.57■■□□□ 1.84
COPS3-212ENST00000539941 CTTNBP2Q8WZ74 1663 aa26.53■■□□□ 1.84
COPS3-212ENST00000539941 VPS8Q8N3P4 1428 aa26.5■■□□□ 1.83
COPS3-212ENST00000539941 MAGI1Q96QZ7 1491 aaPredicted RBP26.46■■□□□ 1.83
COPS3-212ENST00000539941 ARHGAP35Q9NRY4 1499 aa26.45■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms