RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 ZBTB7CA1YPR0 619 aa13.72□□□□□ -0.21
USP28-205ENST00000537706 NLRP13Q86W25 1043 aa13.72□□□□□ -0.21
USP28-205ENST00000537706 ABTB2Q8N961 1025 aa13.72□□□□□ -0.21
USP28-205ENST00000537706 MARCH10Q8NA82 808 aaPredicted RBP13.72□□□□□ -0.21
USP28-205ENST00000537706 COL5A2P05997 1499 aaPredicted RBP13.72□□□□□ -0.21
USP28-205ENST00000537706 CFAP70Q5T0N1 1121 aa13.72□□□□□ -0.21
USP28-205ENST00000537706 SLC34A2O95436 690 aa13.71□□□□□ -0.21
USP28-205ENST00000537706 NLGN2Q8NFZ4 835 aa13.71□□□□□ -0.21
USP28-205ENST00000537706 EXOC5O00471 708 aa13.7□□□□□ -0.22
USP28-205ENST00000537706 YBX3P16989 372 aaKnown RBP eCLIP13.7□□□□□ -0.22
USP28-205ENST00000537706 COL13A1Q5TAT6 717 aaPredicted RBP13.7□□□□□ -0.22
USP28-205ENST00000537706 SPATA31E1Q6ZUB1 1445 aa13.7□□□□□ -0.22
USP28-205ENST00000537706 SBF2Q86WG5 1849 aa13.7□□□□□ -0.22
USP28-205ENST00000537706 LRRC37A3O60309 1634 aa13.69□□□□□ -0.22
USP28-205ENST00000537706 LMO7Q8WWI1 1683 aa13.69□□□□□ -0.22
USP28-205ENST00000537706 GCP02774 474 aa13.68□□□□□ -0.22
USP28-205ENST00000537706 TRAK1Q9UPV9 953 aa13.68□□□□□ -0.22
USP28-205ENST00000537706 USP19O94966 1318 aa13.68□□□□□ -0.22
USP28-205ENST00000537706 NUDT16Q96DE0 195 aaKnown RBP13.68□□□□□ -0.22
USP28-205ENST00000537706 ZNF827Q17R98 1081 aa13.66□□□□□ -0.22
USP28-205ENST00000537706 DNAJC5GQ8N7S2 189 aa13.66□□□□□ -0.22
USP28-205ENST00000537706 PCDH10Q9P2E7 1040 aa13.66□□□□□ -0.22
USP28-205ENST00000537706 ADCY9O60503 1353 aa13.66□□□□□ -0.22
USP28-205ENST00000537706 BRD4O60885 1362 aaPredicted RBP13.66□□□□□ -0.22
USP28-205ENST00000537706 TOPAZ1Q8N9V7 1692 aa13.66□□□□□ -0.22
USP28-205ENST00000537706 CSB-PGBD3P0DP91 1061 aa13.65□□□□□ -0.22
USP28-205ENST00000537706 TFCP2L1Q9NZI6 479 aa13.65□□□□□ -0.22
USP28-205ENST00000537706 ACEP12821 1306 aa13.64□□□□□ -0.23
USP28-205ENST00000537706 WDR17Q8IZU2 1322 aa13.64□□□□□ -0.23
USP28-205ENST00000537706 KIF3CO14782 793 aa13.64□□□□□ -0.23
USP28-205ENST00000537706 TOMM70O94826 608 aa13.64□□□□□ -0.23
USP28-205ENST00000537706 ITSN1Q15811 1721 aa13.63□□□□□ -0.23
USP28-205ENST00000537706 SLC27A3Q5K4L6 730 aa13.63□□□□□ -0.23
USP28-205ENST00000537706 KLRG1Q96E93 195 aa13.63□□□□□ -0.23
USP28-205ENST00000537706 ACSBG1Q96GR2 724 aa13.63□□□□□ -0.23
USP28-205ENST00000537706 POLR3AO14802 1390 aaPredicted RBP13.63□□□□□ -0.23
USP28-205ENST00000537706 AKT1S1Q96B36 256 aa13.62□□□□□ -0.23
USP28-205ENST00000537706 MSH5O43196 834 aa13.62□□□□□ -0.23
USP28-205ENST00000537706 CARD10Q9BWT7 1032 aa13.62□□□□□ -0.23
USP28-205ENST00000537706 AKAP12Q02952 1782 aa13.62□□□□□ -0.23
USP28-205ENST00000537706 JMYQ8N9B5 988 aa13.61□□□□□ -0.23
USP28-205ENST00000537706 WWC3Q9ULE0 1092 aa13.61□□□□□ -0.23
USP28-205ENST00000537706 CD2APQ9Y5K6 639 aa13.61□□□□□ -0.23
USP28-205ENST00000537706 CCDC61Q9Y6R9 512 aa13.61□□□□□ -0.23
USP28-205ENST00000537706 PAPPAQ13219 1627 aa13.61□□□□□ -0.23
USP28-205ENST00000537706 PNPLA7Q6ZV29 1317 aa13.61□□□□□ -0.23
USP28-205ENST00000537706 USP6P35125 1406 aa13.6□□□□□ -0.23
USP28-205ENST00000537706 PLEKHG3A1L390 1219 aa13.6□□□□□ -0.23
USP28-205ENST00000537706 CCDC7Q96M83 1385 aa13.6□□□□□ -0.23
USP28-205ENST00000537706 C16orf71Q8IYS4 520 aaPredicted RBP13.59□□□□□ -0.23
USP28-205ENST00000537706 CDK19Q9BWU1 502 aa13.58□□□□□ -0.23
USP28-205ENST00000537706 TNS2Q63HR2 1409 aa13.58□□□□□ -0.24
USP28-205ENST00000537706 NLRP6P59044 892 aa13.58□□□□□ -0.24
USP28-205ENST00000537706 LRRC4BQ9NT99 713 aa13.58□□□□□ -0.24
USP28-205ENST00000537706 NHSQ6T4R5 1651 aa13.57□□□□□ -0.24
USP28-205ENST00000537706 HMGB2P26583 209 aaKnown RBP13.56□□□□□ -0.24
USP28-205ENST00000537706 CEP350Q5VT06 3117 aa13.56□□□□□ -0.24
USP28-205ENST00000537706 RBM46Q8TBY0 533 aaKnown RBP13.55□□□□□ -0.24
USP28-205ENST00000537706 WNK3Q9BYP7 1800 aa13.54□□□□□ -0.24
USP28-205ENST00000537706 KCNH5Q8NCM2 988 aa13.54□□□□□ -0.24
USP28-205ENST00000537706 COL24A1Q17RW2 1714 aa13.54□□□□□ -0.24
USP28-205ENST00000537706 QSER1Q2KHR3 1735 aa13.54□□□□□ -0.24
USP28-205ENST00000537706 ADGRB1O14514 1584 aa13.53□□□□□ -0.24
USP28-205ENST00000537706 FSTL1Q12841 308 aa13.53□□□□□ -0.24
USP28-205ENST00000537706 PPIP5K1Q6PFW1 1433 aa13.53□□□□□ -0.24
USP28-205ENST00000537706 MPHOSPH9Q99550 1183 aa13.52□□□□□ -0.24
USP28-205ENST00000537706 AXIN2Q9Y2T1 843 aa13.52□□□□□ -0.25
USP28-205ENST00000537706 ABCC6O95255 1503 aa13.51□□□□□ -0.25
USP28-205ENST00000537706 CPSF1Q10570 1443 aaKnown RBP13.51□□□□□ -0.25
USP28-205ENST00000537706 MSL1Q68DK7 614 aa13.51□□□□□ -0.25
USP28-205ENST00000537706 WDR90Q96KV7 1748 aa13.51□□□□□ -0.25
USP28-205ENST00000537706 IL2RBP14784 551 aa13.51□□□□□ -0.25
USP28-205ENST00000537706 FLAD1Q8NFF5 587 aa13.51□□□□□ -0.25
USP28-205ENST00000537706 SLIT3O75094 1523 aa13.5□□□□□ -0.25
USP28-205ENST00000537706 IGSF1Q8N6C5 1336 aa13.5□□□□□ -0.25
USP28-205ENST00000537706 HSPA1AP0DMV8 641 aaKnown RBP13.49□□□□□ -0.25
USP28-205ENST00000537706 HSPA1BP0DMV9 641 aaKnown RBP13.49□□□□□ -0.25
USP28-205ENST00000537706 ARHGEF25Q86VW2 580 aa13.49□□□□□ -0.25
USP28-205ENST00000537706 TRPM1Q7Z4N2 1603 aa13.49□□□□□ -0.25
USP28-205ENST00000537706 SRPK2P78362 688 aaKnown RBP13.49□□□□□ -0.25
USP28-205ENST00000537706 COL23A1Q86Y22 540 aaPredicted RBP13.49□□□□□ -0.25
USP28-205ENST00000537706 STAC3Q96MF2 364 aa13.49□□□□□ -0.25
USP28-205ENST00000537706 UTRNP46939 3433 aa13.48□□□□□ -0.25
USP28-205ENST00000537706 ARHGEF28Q8N1W1 1705 aaKnown RBP13.48□□□□□ -0.25
USP28-205ENST00000537706 NLRP2Q9NX02 1062 aa13.48□□□□□ -0.25
USP28-205ENST00000537706 CCNL1Q9UK58 526 aaPredicted RBP13.48□□□□□ -0.25
USP28-205ENST00000537706 BTAF1O14981 1849 aa13.47□□□□□ -0.25
USP28-205ENST00000537706 HTRA3P83110 453 aa13.47□□□□□ -0.25
USP28-205ENST00000537706 SYTL4Q96C24 671 aaPredicted RBP13.47□□□□□ -0.25
USP28-205ENST00000537706 NMRK2Q9NPI5 230 aa13.46□□□□□ -0.25
USP28-205ENST00000537706 KDM2AQ9Y2K7 1162 aa13.46□□□□□ -0.25
USP28-205ENST00000537706 SOX12O15370 315 aa13.45□□□□□ -0.26
USP28-205ENST00000537706 COL18A1P39060 1754 aa13.44□□□□□ -0.26
USP28-205ENST00000537706 KCNQ4P56696 695 aa13.44□□□□□ -0.26
USP28-205ENST00000537706 KDM2BQ8NHM5 1336 aa13.43□□□□□ -0.26
USP28-205ENST00000537706 SMC1BQ8NDV3 1235 aa13.43□□□□□ -0.26
USP28-205ENST00000537706 DDX54Q8TDD1 881 aaKnown RBP13.43□□□□□ -0.26
USP28-205ENST00000537706 PLEKHG2Q9H7P9 1386 aa13.42□□□□□ -0.26
USP28-205ENST00000537706 DCAF11Q8TEB1 546 aa13.42□□□□□ -0.26
USP28-205ENST00000537706 PRIM1P49642 420 aaKnown RBP13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms