RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 PPP6R1Q9UPN7 881 aa24.44■■□□□ 1.5
PCF11-203ENST00000530304 PTCH1Q13635 1447 aa24.44■■□□□ 1.5
PCF11-203ENST00000530304 MCM4P33991 863 aa24.44■■□□□ 1.5
PCF11-203ENST00000530304 ANKRD45Q5TZF3 282 aa24.44■■□□□ 1.5
PCF11-203ENST00000530304 HSCBQ8IWL3 235 aa24.44■■□□□ 1.5
PCF11-203ENST00000530304 C1orf115Q9H7X2 142 aa24.44■■□□□ 1.5
PCF11-203ENST00000530304 PIK3R4Q99570 1358 aa24.43■■□□□ 1.5
PCF11-203ENST00000530304 GCC1Q96CN9 775 aa24.43■■□□□ 1.5
PCF11-203ENST00000530304 BMP2KLQ5H9B9 411 aa24.42■■□□□ 1.5
PCF11-203ENST00000530304 CDK12Q9NYV4 1490 aaPredicted RBP24.42■■□□□ 1.5
PCF11-203ENST00000530304 FAM69CQ0P6D2 419 aa24.41■■□□□ 1.5
PCF11-203ENST00000530304 CYB5RLQ6IPT4 315 aa24.41■■□□□ 1.5
PCF11-203ENST00000530304 AATKQ6ZMQ8 1374 aa24.41■■□□□ 1.5
PCF11-203ENST00000530304 SPATA31D1Q6ZQQ2 1576 aa24.41■■□□□ 1.5
PCF11-203ENST00000530304 TWISTNBQ3B726 338 aaPredicted RBP24.4■■□□□ 1.5
PCF11-203ENST00000530304 ANO8Q9HCE9 1232 aaPredicted RBP24.4■■□□□ 1.5
PCF11-203ENST00000530304 ABCC4O15439 1325 aa24.39■■□□□ 1.5
PCF11-203ENST00000530304 CFAP44Q96MT7 982 aa24.39■■□□□ 1.5
PCF11-203ENST00000530304 AGLP35573 1532 aa24.39■■□□□ 1.49
PCF11-203ENST00000530304 RRS1Q15050 365 aaKnown RBP24.38■■□□□ 1.49
PCF11-203ENST00000530304 L1TD1Q5T7N2 865 aaKnown RBP24.38■■□□□ 1.49
PCF11-203ENST00000530304 SIRT2Q8IXJ6 389 aa24.38■■□□□ 1.49
PCF11-203ENST00000530304 NUDT16Q96DE0 195 aaKnown RBP24.38■■□□□ 1.49
PCF11-203ENST00000530304 COG3Q96JB2 828 aa24.38■■□□□ 1.49
PCF11-203ENST00000530304 NCKAP5LQ9HCH0 1330 aa24.38■■□□□ 1.49
PCF11-203ENST00000530304 TXNDC2Q86VQ3 553 aa24.38■■□□□ 1.49
PCF11-203ENST00000530304 C8orf58Q8NAV2 365 aa24.38■■□□□ 1.49
PCF11-203ENST00000530304 METP08581 1390 aa24.38■■□□□ 1.49
PCF11-203ENST00000530304 REREQ9P2R6 1566 aa24.37■■□□□ 1.49
PCF11-203ENST00000530304 LMOD3Q0VAK6 560 aa24.37■■□□□ 1.49
PCF11-203ENST00000530304 SNX21Q969T3 373 aa24.37■■□□□ 1.49
PCF11-203ENST00000530304 ZNF692Q9BU19 519 aaPredicted RBP24.37■■□□□ 1.49
PCF11-203ENST00000530304 DLG5Q8TDM6 1919 aa24.36■■□□□ 1.49
PCF11-203ENST00000530304 FAM83GA6ND36 823 aa24.36■■□□□ 1.49
PCF11-203ENST00000530304 MLECQ14165 292 aa24.36■■□□□ 1.49
PCF11-203ENST00000530304 NRXN3Q9Y4C0 1643 aa24.35■■□□□ 1.49
PCF11-203ENST00000530304 CCDC61Q9Y6R9 512 aa24.35■■□□□ 1.49
PCF11-203ENST00000530304 NCOA3Q9Y6Q9 1424 aa24.35■■□□□ 1.49
PCF11-203ENST00000530304 CPS1P31327 1500 aa24.35■■□□□ 1.49
PCF11-203ENST00000530304 DDIT3P35638 169 aa24.33■■□□□ 1.49
PCF11-203ENST00000530304 DCTN1Q14203 1278 aa24.33■■□□□ 1.49
PCF11-203ENST00000530304 API5Q9BZZ5 524 aaKnown RBP24.33■■□□□ 1.49
PCF11-203ENST00000530304 FAM43AQ8N2R8 423 aa24.32■■□□□ 1.48
PCF11-203ENST00000530304 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.32■■□□□ 1.48
PCF11-203ENST00000530304 TSPOAP1O95153 1857 aa24.32■■□□□ 1.48
PCF11-203ENST00000530304 TRAK2O60296 914 aa24.31■■□□□ 1.48
PCF11-203ENST00000530304 KIF2CQ99661 725 aa24.31■■□□□ 1.48
PCF11-203ENST00000530304 GZF1Q9H116 711 aaPredicted RBP24.31■■□□□ 1.48
PCF11-203ENST00000530304 TBC1D9Q6ZT07 1266 aa24.31■■□□□ 1.48
PCF11-203ENST00000530304 MON2Q7Z3U7 1717 aa24.31■■□□□ 1.48
PCF11-203ENST00000530304 GOLGA6L3A6NEY3 463 aa24.29■■□□□ 1.48
PCF11-203ENST00000530304 DIP2BQ9P265 1576 aa24.29■■□□□ 1.48
PCF11-203ENST00000530304 FSD2A1L4K1 749 aa24.29■■□□□ 1.48
PCF11-203ENST00000530304 SIRT1Q96EB6 747 aa24.28■■□□□ 1.48
PCF11-203ENST00000530304 ARXQ96QS3 562 aa24.28■■□□□ 1.48
PCF11-203ENST00000530304 HSP90AB1P08238 724 aaKnown RBP24.27■■□□□ 1.48
PCF11-203ENST00000530304 C3P01024 1663 aa24.26■■□□□ 1.47
PCF11-203ENST00000530304 DDX11L8A8MPP1 907 aa24.26■■□□□ 1.47
PCF11-203ENST00000530304 XRCC6P12956 609 aaKnown RBP eCLIP24.26■■□□□ 1.472e-13■□□□□ 8.8
PCF11-203ENST00000530304 PRKCSHP14314 528 aaPredicted RBP24.26■■□□□ 1.47
PCF11-203ENST00000530304 AKAP12Q02952 1782 aa24.26■■□□□ 1.47
PCF11-203ENST00000530304 KIF24Q5T7B8 1368 aa24.25■■□□□ 1.47
PCF11-203ENST00000530304 AEBP1Q8IUX7 1158 aa24.25■■□□□ 1.47
PCF11-203ENST00000530304 PRR36Q9H6K5 1346 aa24.24■■□□□ 1.47
PCF11-203ENST00000530304 TECPR2O15040 1411 aa24.24■■□□□ 1.47
PCF11-203ENST00000530304 KNDC1Q76NI1 1749 aa24.24■■□□□ 1.47
PCF11-203ENST00000530304 CD2BP2O95400 341 aaKnown RBP24.24■■□□□ 1.47
PCF11-203ENST00000530304 SULT6B1Q6IMI4 303 aa24.24■■□□□ 1.47
PCF11-203ENST00000530304 EIF4A2Q14240 407 aaKnown RBP24.23■■□□□ 1.47
PCF11-203ENST00000530304 TNPO1Q92973 898 aaKnown RBP24.23■■□□□ 1.47
PCF11-203ENST00000530304 DCTPP1Q9H773 170 aa24.23■■□□□ 1.47
PCF11-203ENST00000530304 CIZ1Q9ULV3 898 aaPredicted RBP24.23■■□□□ 1.47
PCF11-203ENST00000530304 ITSN1Q15811 1721 aa24.23■■□□□ 1.47
PCF11-203ENST00000530304 CDC45O75419 566 aa24.22■■□□□ 1.47
PCF11-203ENST00000530304 INTS3Q68E01 1043 aaKnown RBP24.22■■□□□ 1.47
PCF11-203ENST00000530304 ZBTB4Q9P1Z0 1013 aaPredicted RBP24.22■■□□□ 1.47
PCF11-203ENST00000530304 GSPT1P15170 499 aaKnown RBP24.22■■□□□ 1.47
PCF11-203ENST00000530304 PLEKHM2Q8IWE5 1019 aa24.22■■□□□ 1.47
PCF11-203ENST00000530304 HDGFP51858 240 aaKnown RBP24.21■■□□□ 1.47
PCF11-203ENST00000530304 KRT24Q2M2I5 525 aa24.21■■□□□ 1.47
PCF11-203ENST00000530304 RBM42Q9BTD8 480 aaKnown RBP24.21■■□□□ 1.47
PCF11-203ENST00000530304 RAB3GAP1Q15042 981 aa24.2■■□□□ 1.46
PCF11-203ENST00000530304 K7ELQ4 463 aaPredicted RBP24.19■■□□□ 1.46
PCF11-203ENST00000530304 NRKQ7Z2Y5 1582 aa24.19■■□□□ 1.46
PCF11-203ENST00000530304 CHL1O00533 1208 aa24.19■■□□□ 1.46
PCF11-203ENST00000530304 HSP90AA1P07900 732 aaKnown RBP24.19■■□□□ 1.46
PCF11-203ENST00000530304 ESF1Q9H501 851 aaKnown RBP24.19■■□□□ 1.46
PCF11-203ENST00000530304 MCM10Q7L590 875 aa24.18■■□□□ 1.46
PCF11-203ENST00000530304 HAP1P54257 671 aaPredicted RBP24.18■■□□□ 1.46
PCF11-203ENST00000530304 TTC21BQ7Z4L5 1316 aa24.18■■□□□ 1.46
PCF11-203ENST00000530304 PANK2Q9BZ23 570 aa24.17■■□□□ 1.46
PCF11-203ENST00000530304 FOXD4L1Q9NU39 408 aa24.17■■□□□ 1.46
PCF11-203ENST00000530304 C16orf71Q8IYS4 520 aaPredicted RBP24.17■■□□□ 1.46
PCF11-203ENST00000530304 ANKRD44Q8N8A2 993 aa24.17■■□□□ 1.46
PCF11-203ENST00000530304 ROBO2Q9HCK4 1378 aa24.17■■□□□ 1.46
PCF11-203ENST00000530304 RGS12O14924 1447 aa24.17■■□□□ 1.46
PCF11-203ENST00000530304 GBP4Q96PP9 640 aa24.16■■□□□ 1.46
PCF11-203ENST00000530304 TTC22Q5TAA0 569 aa24.15■■□□□ 1.46
PCF11-203ENST00000530304 ATP10DQ9P241 1426 aa24.15■■□□□ 1.46
PCF11-203ENST00000530304 ACEP12821 1306 aa24.15■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 99.8 ms