RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 KCTD12Q96CX2 325 aaKnown RBP12.71□□□□□ -0.37
LSM1-202ENST00000520286 ATP5J2-PTCD1G3V325 749 aa12.7□□□□□ -0.38
LSM1-202ENST00000520286 RASA1P20936 1047 aa12.7□□□□□ -0.38
LSM1-202ENST00000520286 MTRQ99707 1265 aa12.7□□□□□ -0.38
LSM1-202ENST00000520286 MAP7D1Q3KQU3 841 aa12.69□□□□□ -0.38
LSM1-202ENST00000520286 SH3BP5LQ7L8J4 393 aa12.69□□□□□ -0.38
LSM1-202ENST00000520286 PTK7Q13308 1070 aa12.68□□□□□ -0.38
LSM1-202ENST00000520286 DZIP3Q86Y13 1208 aaKnown RBP12.68□□□□□ -0.38
LSM1-202ENST00000520286 SLC6A16Q9GZN6 736 aa12.68□□□□□ -0.38
LSM1-202ENST00000520286 CHIC2Q9UKJ5 165 aa12.68□□□□□ -0.38
LSM1-202ENST00000520286 EML3Q32P44 896 aa12.67□□□□□ -0.38
LSM1-202ENST00000520286 FAM200AQ8TCP9 573 aa12.67□□□□□ -0.38
LSM1-202ENST00000520286 SND1Q7KZF4 910 aaKnown RBP eCLIP12.66□□□□□ -0.38
LSM1-202ENST00000520286 CARD14Q9BXL6 1004 aa12.66□□□□□ -0.38
LSM1-202ENST00000520286 GNEQ9Y223 722 aaKnown RBP12.66□□□□□ -0.38
LSM1-202ENST00000520286 MAGEB6P1A0A0J9YX57 407 aa12.65□□□□□ -0.38
LSM1-202ENST00000520286 TRAF7Q6Q0C0 670 aa12.65□□□□□ -0.38
LSM1-202ENST00000520286 KRTAP3-3Q9BYR6 98 aa12.65□□□□□ -0.38
LSM1-202ENST00000520286 KRTAP3-2Q9BYR7 98 aa12.65□□□□□ -0.38
LSM1-202ENST00000520286 TSGA10IPQ3SY00 556 aa12.64□□□□□ -0.39
LSM1-202ENST00000520286 FOXD4L5Q5VV16 416 aaPredicted RBP12.64□□□□□ -0.39
LSM1-202ENST00000520286 SH3RF1Q7Z6J0 888 aa12.64□□□□□ -0.39
LSM1-202ENST00000520286 ANKMY2Q8IV38 441 aa12.64□□□□□ -0.39
LSM1-202ENST00000520286 FOXD4L4Q8WXT5 416 aaPredicted RBP12.64□□□□□ -0.39
LSM1-202ENST00000520286 CDCA7Q9BWT1 371 aaPredicted RBP12.64□□□□□ -0.39
LSM1-202ENST00000520286 IL21Q9HBE4 155 aa12.64□□□□□ -0.39
LSM1-202ENST00000520286 MYT1LQ9UL68 1186 aa12.64□□□□□ -0.39
LSM1-202ENST00000520286 CCDC27Q2M243 656 aa12.63□□□□□ -0.39
LSM1-202ENST00000520286 TJAP1Q5JTD0 557 aa12.63□□□□□ -0.39
LSM1-202ENST00000520286 OGFOD1Q8N543 542 aa12.63□□□□□ -0.39
LSM1-202ENST00000520286 BAP1Q92560 729 aa12.63□□□□□ -0.39
LSM1-202ENST00000520286 ZNF516Q92618 1163 aa12.63□□□□□ -0.39
LSM1-202ENST00000520286 PHLDB3Q6NSJ2 640 aa12.62□□□□□ -0.39
LSM1-202ENST00000520286 TRIM50Q86XT4 487 aa12.62□□□□□ -0.39
LSM1-202ENST00000520286 CCER1Q8TC90 406 aaPredicted RBP12.62□□□□□ -0.39
LSM1-202ENST00000520286 DOLKQ9UPQ8 538 aa12.62□□□□□ -0.39
LSM1-202ENST00000520286 NOD1Q9Y239 953 aa12.62□□□□□ -0.39
LSM1-202ENST00000520286 PTPN5P54829 565 aa12.61□□□□□ -0.39
LSM1-202ENST00000520286 FAM69CQ0P6D2 419 aa12.61□□□□□ -0.39
LSM1-202ENST00000520286 AGERQ15109 404 aa12.61□□□□□ -0.39
LSM1-202ENST00000520286 BPHLQ86WA6 291 aaPredicted RBP12.61□□□□□ -0.39
LSM1-202ENST00000520286 POTEMA6NI47 508 aa12.6□□□□□ -0.39
LSM1-202ENST00000520286 SSFA2P28290 1259 aa12.6□□□□□ -0.39
LSM1-202ENST00000520286 ATP1A2P50993 1020 aa12.6□□□□□ -0.39
LSM1-202ENST00000520286 CLDN10P78369 228 aa12.6□□□□□ -0.39
LSM1-202ENST00000520286 DPYDQ12882 1025 aa12.6□□□□□ -0.39
LSM1-202ENST00000520286 LINC01559Q495D7 138 aa12.6□□□□□ -0.39
LSM1-202ENST00000520286 ERFEQ4G0M1 354 aa12.6□□□□□ -0.39
LSM1-202ENST00000520286 CLP1Q92989 425 aaKnown RBP12.6□□□□□ -0.39
LSM1-202ENST00000520286 ZNF594Q96JF6 807 aaPredicted RBP12.6□□□□□ -0.39
LSM1-202ENST00000520286 CCDC85AQ96PX6 553 aaPredicted RBP12.6□□□□□ -0.39
LSM1-202ENST00000520286 DNAAF2Q9NVR5 837 aaKnown RBP12.6□□□□□ -0.39
LSM1-202ENST00000520286 GIGYF1O75420 1035 aaPredicted RBP12.59□□□□□ -0.39
LSM1-202ENST00000520286 TXNDC2Q86VQ3 553 aa12.59□□□□□ -0.39
LSM1-202ENST00000520286 FOXJ1Q92949 421 aa12.59□□□□□ -0.39
LSM1-202ENST00000520286 SLAIN2Q9P270 581 aa12.59□□□□□ -0.39
LSM1-202ENST00000520286 OXLD1Q5BKU9 147 aa12.58□□□□□ -0.4
LSM1-202ENST00000520286 ZNF511Q8NB15 262 aa12.58□□□□□ -0.4
LSM1-202ENST00000520286 S1PR4O95977 384 aa12.57□□□□□ -0.4
LSM1-202ENST00000520286 RNF20Q5VTR2 975 aa12.57□□□□□ -0.4
LSM1-202ENST00000520286 LARGE2Q8N3Y3 721 aa12.57□□□□□ -0.4
LSM1-202ENST00000520286 FCF1Q9Y324 198 aaKnown RBP12.57□□□□□ -0.4
LSM1-202ENST00000520286 ARID4AP29374 1257 aaPredicted RBP12.56□□□□□ -0.4
LSM1-202ENST00000520286 C4orf48Q5BLP8 95 aa12.56□□□□□ -0.4
LSM1-202ENST00000520286 SLC10A4Q96EP9 437 aa12.56□□□□□ -0.4
LSM1-202ENST00000520286 SWI5Q1ZZU3 235 aa12.55□□□□□ -0.4
LSM1-202ENST00000520286 NKX2-3Q8TAU0 364 aa12.55□□□□□ -0.4
LSM1-202ENST00000520286 ATP2B4P23634 1241 aa12.54□□□□□ -0.4
LSM1-202ENST00000520286 GTF2IP78347 998 aa12.54□□□□□ -0.4
LSM1-202ENST00000520286 ZBTB7BO15156 539 aaPredicted RBP12.53□□□□□ -0.4
LSM1-202ENST00000520286 RBM25P49756 843 aaKnown RBP12.53□□□□□ -0.4
LSM1-202ENST00000520286 NBPF20Q3BBV1 942 aa12.53□□□□□ -0.4
LSM1-202ENST00000520286 SIX5Q8N196 739 aa12.53□□□□□ -0.4
LSM1-202ENST00000520286 KIAA1024Q9UPX6 916 aa12.53□□□□□ -0.4
LSM1-202ENST00000520286 DKK1O94907 266 aa12.52□□□□□ -0.41
LSM1-202ENST00000520286 ZNF428Q96B54 188 aa12.51□□□□□ -0.41
LSM1-202ENST00000520286 C1QTNF2Q9BXJ5 285 aa12.51□□□□□ -0.41
LSM1-202ENST00000520286 RBM19Q9Y4C8 960 aaKnown RBP12.51□□□□□ -0.41
LSM1-202ENST00000520286 SEC13P55735 322 aa12.5□□□□□ -0.41
LSM1-202ENST00000520286 SIRT1Q96EB6 747 aa12.5□□□□□ -0.41
LSM1-202ENST00000520286 CDV3Q9UKY7 258 aaKnown RBP12.5□□□□□ -0.41
LSM1-202ENST00000520286 ESPNB1AK53 854 aa12.49□□□□□ -0.41
LSM1-202ENST00000520286 SH3BP2P78314 561 aa12.49□□□□□ -0.41
LSM1-202ENST00000520286 USP4Q13107 963 aa12.49□□□□□ -0.41
LSM1-202ENST00000520286 CCDC102BQ68D86 513 aa12.49□□□□□ -0.41
LSM1-202ENST00000520286 TRMT44Q8IYL2 757 aaKnown RBP12.49□□□□□ -0.41
LSM1-202ENST00000520286 PCDHB11Q9Y5F2 797 aa12.49□□□□□ -0.41
LSM1-202ENST00000520286 PSME1Q06323 249 aa12.48□□□□□ -0.41
LSM1-202ENST00000520286 SEPT12Q8IYM1 358 aa12.48□□□□□ -0.41
LSM1-202ENST00000520286 CCDC125Q86Z20 511 aa12.47□□□□□ -0.41
LSM1-202ENST00000520286 TPCN2Q8NHX9 752 aa12.47□□□□□ -0.41
LSM1-202ENST00000520286 PCDH10Q9P2E7 1040 aa12.47□□□□□ -0.41
LSM1-202ENST00000520286 AMOTL2Q9Y2J4 779 aa12.47□□□□□ -0.41
LSM1-202ENST00000520286 PCDHGA11Q9Y5H2 935 aa12.47□□□□□ -0.41
LSM1-202ENST00000520286 SFI1A8K8P3 1242 aa12.46□□□□□ -0.41
LSM1-202ENST00000520286 PRMT3O60678 531 aa12.46□□□□□ -0.41
LSM1-202ENST00000520286 C1orf216Q8TAB5 229 aa12.46□□□□□ -0.41
LSM1-202ENST00000520286 SOWAHDA6NJG2 315 aa12.45□□□□□ -0.42
LSM1-202ENST00000520286 SERPINB4P48594 390 aa12.45□□□□□ -0.42
LSM1-202ENST00000520286 PPEF1O14829 653 aaPredicted RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms