RNA–Protein interactions for RNA: ENST00000513761.5

CLCN3-209, Transcript of chloride voltage-gated channel 3, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CLCN3, Length 6,692 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-209ENST00000513761 ALDH1L2Q3SY69 923 aa9.28□□□□□ -0.92
CLCN3-209ENST00000513761 PODXL2Q9NZ53 605 aa9.28□□□□□ -0.92
CLCN3-209ENST00000513761 NUCB1Q02818 461 aa9.28□□□□□ -0.92
CLCN3-209ENST00000513761 HDAC1Q13547 482 aaPredicted RBP9.28□□□□□ -0.92
CLCN3-209ENST00000513761 CAMK4Q16566 473 aa9.28□□□□□ -0.92
CLCN3-209ENST00000513761 CWC27Q6UX04 472 aaKnown RBP9.28□□□□□ -0.92
CLCN3-209ENST00000513761 SMC2O95347 1197 aa9.28□□□□□ -0.92
CLCN3-209ENST00000513761 PSMA5P28066 241 aa9.28□□□□□ -0.92
CLCN3-209ENST00000513761 LARP1BQ659C4 914 aaKnown RBP9.28□□□□□ -0.92
CLCN3-209ENST00000513761 ARGLU1Q9NWB6 273 aaPredicted RBP9.27□□□□□ -0.92
CLCN3-209ENST00000513761 CYP46A1Q9Y6A2 500 aa9.27□□□□□ -0.92
CLCN3-209ENST00000513761 CCT4P50991 539 aaKnown RBP9.27□□□□□ -0.93
CLCN3-209ENST00000513761 FERMT3Q86UX7 667 aa9.27□□□□□ -0.93
CLCN3-209ENST00000513761 PRAG1Q86YV5 1406 aa9.27□□□□□ -0.93
CLCN3-209ENST00000513761 GPS2Q13227 327 aa9.27□□□□□ -0.93
CLCN3-209ENST00000513761 GAS2L2Q8NHY3 880 aa9.27□□□□□ -0.93
CLCN3-209ENST00000513761 CC2D2AQ9P2K1 1620 aa9.27□□□□□ -0.93
CLCN3-209ENST00000513761 PDCP20941 246 aa9.27□□□□□ -0.93
CLCN3-209ENST00000513761 KRT85P78386 507 aa9.27□□□□□ -0.93
CLCN3-209ENST00000513761 NUTM1Q86Y26 1132 aa9.27□□□□□ -0.93
CLCN3-209ENST00000513761 EID1Q9Y6B2 187 aa9.27□□□□□ -0.93
CLCN3-209ENST00000513761 SCAF11Q99590 1463 aaKnown RBP9.27□□□□□ -0.93
CLCN3-209ENST00000513761 KINO60870 393 aaKnown RBP9.27□□□□□ -0.93
CLCN3-209ENST00000513761 KDM4AO75164 1064 aa9.27□□□□□ -0.93
CLCN3-209ENST00000513761 DDX54Q8TDD1 881 aaKnown RBP9.27□□□□□ -0.93
CLCN3-209ENST00000513761 ZNF830Q96NB3 372 aaPredicted RBP9.27□□□□□ -0.93
CLCN3-209ENST00000513761 TSHZ3Q63HK5 1081 aa9.26□□□□□ -0.93
CLCN3-209ENST00000513761 DMRT2Q9Y5R5 561 aa9.26□□□□□ -0.93
CLCN3-209ENST00000513761 GPATCH8Q9UKJ3 1502 aaKnown RBP9.26□□□□□ -0.93
CLCN3-209ENST00000513761 JAKMIP1Q96N16 626 aaKnown RBP9.26□□□□□ -0.93
CLCN3-209ENST00000513761 MCM10Q7L590 875 aa9.26□□□□□ -0.93
CLCN3-209ENST00000513761 FILIP1Q7Z7B0 1213 aa9.26□□□□□ -0.93
CLCN3-209ENST00000513761 NAT10Q9H0A0 1025 aaKnown RBP9.26□□□□□ -0.93
CLCN3-209ENST00000513761 NUP62CLQ9H1M0 184 aa9.26□□□□□ -0.93
CLCN3-209ENST00000513761 TEX14Q8IWB6 1497 aa9.25□□□□□ -0.93
CLCN3-209ENST00000513761 PDILTQ8N807 584 aa9.25□□□□□ -0.93
CLCN3-209ENST00000513761 F6X3S4 739 aa9.25□□□□□ -0.93
CLCN3-209ENST00000513761 PRIM1P49642 420 aaKnown RBP9.25□□□□□ -0.93
CLCN3-209ENST00000513761 SYNE3Q6ZMZ3 975 aa9.25□□□□□ -0.93
CLCN3-209ENST00000513761 CCDC83Q8IWF9 413 aa9.25□□□□□ -0.93
CLCN3-209ENST00000513761 CCDC66A2RUB6 948 aa9.25□□□□□ -0.93
CLCN3-209ENST00000513761 RAB3GAP1Q15042 981 aa9.25□□□□□ -0.93
CLCN3-209ENST00000513761 TCOF1Q13428 1488 aaKnown RBP9.25□□□□□ -0.93
CLCN3-209ENST00000513761 CASTP20810 708 aaKnown RBP9.25□□□□□ -0.93
CLCN3-209ENST00000513761 MAPK8IP2Q13387 824 aaPredicted RBP9.25□□□□□ -0.93
CLCN3-209ENST00000513761 TXNDC2Q86VQ3 553 aa9.25□□□□□ -0.93
CLCN3-209ENST00000513761 AEBP1Q8IUX7 1158 aa9.25□□□□□ -0.93
CLCN3-209ENST00000513761 NEUROD6Q96NK8 337 aa9.25□□□□□ -0.93
CLCN3-209ENST00000513761 PDRG1Q9NUG6 133 aa9.25□□□□□ -0.93
CLCN3-209ENST00000513761 CCDC183Q5T5S1 534 aa9.25□□□□□ -0.93
CLCN3-209ENST00000513761 HDGFL1Q5TGJ6 251 aa9.25□□□□□ -0.93
CLCN3-209ENST00000513761 NOC3LQ8WTT2 800 aaKnown RBP9.25□□□□□ -0.93
CLCN3-209ENST00000513761 SNX21Q969T3 373 aa9.25□□□□□ -0.93
CLCN3-209ENST00000513761 SPDYE4A6NLX3 237 aa9.24□□□□□ -0.93
CLCN3-209ENST00000513761 APPP05067 770 aa9.24□□□□□ -0.93
CLCN3-209ENST00000513761 MX1P20591 662 aa9.24□□□□□ -0.93
CLCN3-209ENST00000513761 FBLN1P23142 703 aa9.24□□□□□ -0.93
CLCN3-209ENST00000513761 ASXL1Q8IXJ9 1541 aa9.24□□□□□ -0.93
CLCN3-209ENST00000513761 ADCY5O95622 1261 aa9.24□□□□□ -0.93
CLCN3-209ENST00000513761 CHMP4CQ96CF2 233 aa9.24□□□□□ -0.93
CLCN3-209ENST00000513761 SPATA32Q96LK8 384 aa9.24□□□□□ -0.93
CLCN3-209ENST00000513761 ERICH4A6NGS2 130 aa9.24□□□□□ -0.93
CLCN3-209ENST00000513761 SRGAP3O43295 1099 aa9.24□□□□□ -0.93
CLCN3-209ENST00000513761 DDX58O95786 925 aaKnown RBP9.24□□□□□ -0.93
CLCN3-209ENST00000513761 CPLX2Q6PUV4 134 aaKnown RBP9.24□□□□□ -0.93
CLCN3-209ENST00000513761 DNAJC2Q99543 621 aaKnown RBP9.24□□□□□ -0.93
CLCN3-209ENST00000513761 ABCC11Q96J66 1382 aa9.24□□□□□ -0.93
CLCN3-209ENST00000513761 TRIM29Q14134 588 aa9.24□□□□□ -0.93
CLCN3-209ENST00000513761 RIC3Q7Z5B4 369 aa9.24□□□□□ -0.93
CLCN3-209ENST00000513761 TPM1P09493 284 aa9.24□□□□□ -0.93
CLCN3-209ENST00000513761 PPP4R3BQ5MIZ7 849 aa9.24□□□□□ -0.93
CLCN3-209ENST00000513761 LRSAM1Q6UWE0 723 aa9.24□□□□□ -0.93
CLCN3-209ENST00000513761 SMC5Q8IY18 1101 aa9.24□□□□□ -0.93
CLCN3-209ENST00000513761 UNC13AQ9UPW8 1703 aa9.23□□□□□ -0.93
CLCN3-209ENST00000513761 TTC22Q5TAA0 569 aa9.23□□□□□ -0.93
CLCN3-209ENST00000513761 SIL1Q9H173 461 aa9.23□□□□□ -0.93
CLCN3-209ENST00000513761 DYNC1I1O14576 645 aa9.23□□□□□ -0.93
CLCN3-209ENST00000513761 NLRP6P59044 892 aa9.23□□□□□ -0.93
CLCN3-209ENST00000513761 MAP3K11Q16584 847 aa9.23□□□□□ -0.93
CLCN3-209ENST00000513761 C16orf71Q8IYS4 520 aaPredicted RBP9.23□□□□□ -0.93
CLCN3-209ENST00000513761 SRCIN1Q9C0H9 1055 aa9.23□□□□□ -0.93
CLCN3-209ENST00000513761 EMILIN1Q9Y6C2 1016 aa9.23□□□□□ -0.93
CLCN3-209ENST00000513761 PZPP20742 1482 aa9.23□□□□□ -0.93
CLCN3-209ENST00000513761 IFT140Q96RY7 1462 aa9.23□□□□□ -0.93
CLCN3-209ENST00000513761 HCLS1P14317 486 aaPredicted RBP9.23□□□□□ -0.93
CLCN3-209ENST00000513761 FAM177A1Q8N128 213 aaPredicted RBP9.23□□□□□ -0.93
CLCN3-209ENST00000513761 TSR1Q2NL82 804 aaKnown RBP9.22□□□□□ -0.93
CLCN3-209ENST00000513761 TTLL5Q6EMB2 1281 aa9.22□□□□□ -0.93
CLCN3-209ENST00000513761 C16orf45Q96MC5 204 aaPredicted RBP9.22□□□□□ -0.93
CLCN3-209ENST00000513761 CARD14Q9BXL6 1004 aa9.22□□□□□ -0.93
CLCN3-209ENST00000513761 DNAJC5BQ9UF47 199 aa9.22□□□□□ -0.93
CLCN3-209ENST00000513761 SPATA31E1Q6ZUB1 1445 aa9.22□□□□□ -0.93
CLCN3-209ENST00000513761 MRC2Q9UBG0 1479 aa9.22□□□□□ -0.93
CLCN3-209ENST00000513761 FAM83GA6ND36 823 aa9.22□□□□□ -0.93
CLCN3-209ENST00000513761 SDSP20132 328 aa9.22□□□□□ -0.93
CLCN3-209ENST00000513761 ME1P48163 572 aa9.22□□□□□ -0.93
CLCN3-209ENST00000513761 CKAP2LQ8IYA6 745 aa9.22□□□□□ -0.93
CLCN3-209ENST00000513761 ZGPATQ8N5A5 531 aaKnown RBP9.22□□□□□ -0.93
CLCN3-209ENST00000513761 TMX3Q96JJ7 454 aa9.22□□□□□ -0.93
CLCN3-209ENST00000513761 ATAD2Q6PL18 1390 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms