RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 BAG4O95429 457 aaKnown RBP13.46□□□□□ -0.25
TCOF1-211ENST00000513346 RARSP54136 660 aaKnown RBP13.46□□□□□ -0.25
TCOF1-211ENST00000513346 HS1BP3Q53T59 392 aa13.46□□□□□ -0.26
TCOF1-211ENST00000513346 TSR2Q969E8 191 aaKnown RBP13.46□□□□□ -0.26
TCOF1-211ENST00000513346 CHMP4CQ96CF2 233 aa13.46□□□□□ -0.26
TCOF1-211ENST00000513346 ATP10BO94823 1461 aa13.45□□□□□ -0.26
TCOF1-211ENST00000513346 ERC2O15083 957 aa13.45□□□□□ -0.26
TCOF1-211ENST00000513346 CCDC27Q2M243 656 aa13.45□□□□□ -0.26
TCOF1-211ENST00000513346 SMAP1Q8IYB5 467 aaPredicted RBP13.45□□□□□ -0.26
TCOF1-211ENST00000513346 EIF4G3O43432 1585 aaKnown RBP13.45□□□□□ -0.26
TCOF1-211ENST00000513346 HSP90B2PQ58FF3 399 aa13.44□□□□□ -0.26
TCOF1-211ENST00000513346 CCDC73Q6ZRK6 1079 aa13.44□□□□□ -0.26
TCOF1-211ENST00000513346 NOC3LQ8WTT2 800 aaKnown RBP13.44□□□□□ -0.26
TCOF1-211ENST00000513346 C1orf115Q9H7X2 142 aa13.44□□□□□ -0.26
TCOF1-211ENST00000513346 ADGRF5Q8IZF2 1346 aa13.44□□□□□ -0.26
TCOF1-211ENST00000513346 NUP160Q12769 1436 aa13.44□□□□□ -0.26
TCOF1-211ENST00000513346 ADAMTS12P58397 1594 aa13.44□□□□□ -0.26
TCOF1-211ENST00000513346 ACBD3Q9H3P7 528 aa13.44□□□□□ -0.26
TCOF1-211ENST00000513346 ZKSCAN5Q9Y2L8 839 aa13.44□□□□□ -0.26
TCOF1-211ENST00000513346 ZNF692Q9BU19 519 aaPredicted RBP13.43□□□□□ -0.26
TCOF1-211ENST00000513346 PLCH2O75038 1416 aa13.43□□□□□ -0.26
TCOF1-211ENST00000513346 TSPYL1Q9H0U9 437 aa13.43□□□□□ -0.26
TCOF1-211ENST00000513346 ERICH4A6NGS2 130 aa13.43□□□□□ -0.26
TCOF1-211ENST00000513346 APPP05067 770 aa13.43□□□□□ -0.26
TCOF1-211ENST00000513346 BBXQ8WY36 941 aaPredicted RBP13.43□□□□□ -0.26
TCOF1-211ENST00000513346 DNAJC5Q9H3Z4 198 aa13.43□□□□□ -0.26
TCOF1-211ENST00000513346 CALCOCO1Q9P1Z2 691 aa13.43□□□□□ -0.26
TCOF1-211ENST00000513346 DHX29Q7Z478 1369 aaKnown RBP13.43□□□□□ -0.26
TCOF1-211ENST00000513346 GTPBP4Q9BZE4 634 aaKnown RBP13.43□□□□□ -0.26
TCOF1-211ENST00000513346 NAT10Q9H0A0 1025 aaKnown RBP13.43□□□□□ -0.26
TCOF1-211ENST00000513346 PDE4CQ08493 712 aa13.42□□□□□ -0.26
TCOF1-211ENST00000513346 CCDC94Q9BW85 323 aaPredicted RBP13.42□□□□□ -0.26
TCOF1-211ENST00000513346 RAPGEF6Q8TEU7 1601 aa13.42□□□□□ -0.26
TCOF1-211ENST00000513346 SF3B2Q13435 895 aaKnown RBP13.42□□□□□ -0.26
TCOF1-211ENST00000513346 AK7Q96M32 723 aa13.42□□□□□ -0.26
TCOF1-211ENST00000513346 CLSTN1O94985 981 aa13.41□□□□□ -0.26
TCOF1-211ENST00000513346 IFIT2P09913 472 aaKnown RBP13.41□□□□□ -0.26
TCOF1-211ENST00000513346 ZSCAN23Q3MJ62 389 aa13.41□□□□□ -0.26
TCOF1-211ENST00000513346 GAS2L2Q8NHY3 880 aa13.41□□□□□ -0.26
TCOF1-211ENST00000513346 HMGB2P26583 209 aaKnown RBP13.41□□□□□ -0.26
TCOF1-211ENST00000513346 G3BP1Q13283 466 aaKnown RBP eCLIP13.41□□□□□ -0.262e-7■■■■□ 22.1
TCOF1-211ENST00000513346 RNF20Q5VTR2 975 aa13.41□□□□□ -0.26
TCOF1-211ENST00000513346 LEKR1Q6ZMV7 388 aa13.41□□□□□ -0.26
TCOF1-211ENST00000513346 NSD3Q9BZ95 1437 aa13.41□□□□□ -0.26
TCOF1-211ENST00000513346 AIMP1Q12904 312 aaKnown RBP13.41□□□□□ -0.26
TCOF1-211ENST00000513346 MAPK8IP2Q13387 824 aaPredicted RBP13.41□□□□□ -0.26
TCOF1-211ENST00000513346 LRRFIP1Q32MZ4 808 aaKnown RBP13.41□□□□□ -0.26
TCOF1-211ENST00000513346 PDCP20941 246 aa13.4□□□□□ -0.26
TCOF1-211ENST00000513346 TERF1P54274 439 aa13.4□□□□□ -0.26
TCOF1-211ENST00000513346 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.4□□□□□ -0.26
TCOF1-211ENST00000513346 SPDYE4A6NLX3 237 aa13.4□□□□□ -0.26
TCOF1-211ENST00000513346 TPM1P09493 284 aa13.4□□□□□ -0.26
TCOF1-211ENST00000513346 TMEM57Q8N5G2 664 aa13.4□□□□□ -0.26
TCOF1-211ENST00000513346 CCP110O43303 1012 aa13.4□□□□□ -0.26
TCOF1-211ENST00000513346 IDI1Q13907 227 aa13.4□□□□□ -0.26
TCOF1-211ENST00000513346 RIC3Q7Z5B4 369 aa13.4□□□□□ -0.26
TCOF1-211ENST00000513346 ABCC2Q92887 1545 aa13.4□□□□□ -0.27
TCOF1-211ENST00000513346 SNX21Q969T3 373 aa13.4□□□□□ -0.27
TCOF1-211ENST00000513346 RTEL1-TNFRSF6BF6WH68 1400 aa13.39□□□□□ -0.27
TCOF1-211ENST00000513346 DCAF8L1A6NGE4 600 aa13.39□□□□□ -0.27
TCOF1-211ENST00000513346 USP25Q9UHP3 1055 aa13.39□□□□□ -0.27
TCOF1-211ENST00000513346 SEC24BO95487 1268 aa13.39□□□□□ -0.27
TCOF1-211ENST00000513346 SULT6B1Q6IMI4 303 aa13.39□□□□□ -0.27
TCOF1-211ENST00000513346 CCDC70Q6NSX1 233 aa13.39□□□□□ -0.27
TCOF1-211ENST00000513346 ATAD2Q6PL18 1390 aa13.39□□□□□ -0.27
TCOF1-211ENST00000513346 PLEKHO1Q53GL0 409 aaPredicted RBP13.39□□□□□ -0.27
TCOF1-211ENST00000513346 LRSAM1Q6UWE0 723 aa13.39□□□□□ -0.27
TCOF1-211ENST00000513346 TNMDQ9H2S6 317 aa13.38□□□□□ -0.27
TCOF1-211ENST00000513346 CTTNBP2Q8WZ74 1663 aa13.38□□□□□ -0.27
TCOF1-211ENST00000513346 CCDC183Q5T5S1 534 aa13.38□□□□□ -0.27
TCOF1-211ENST00000513346 FBXW7Q969H0 707 aa13.38□□□□□ -0.27
TCOF1-211ENST00000513346 WAPLQ7Z5K2 1190 aa13.38□□□□□ -0.27
TCOF1-211ENST00000513346 ZNF518AQ6AHZ1 1483 aa13.38□□□□□ -0.27
TCOF1-211ENST00000513346 UVSSAQ2YD98 709 aa13.38□□□□□ -0.27
TCOF1-211ENST00000513346 TNRQ92752 1358 aa13.37□□□□□ -0.27
TCOF1-211ENST00000513346 DHX8Q14562 1220 aaKnown RBP13.37□□□□□ -0.27
TCOF1-211ENST00000513346 HSP90AB4PQ58FF6 505 aa13.37□□□□□ -0.27
TCOF1-211ENST00000513346 SDF4Q9BRK5 362 aa13.37□□□□□ -0.27
TCOF1-211ENST00000513346 KDM2BQ8NHM5 1336 aa13.37□□□□□ -0.27
TCOF1-211ENST00000513346 TWISTNBQ3B726 338 aaPredicted RBP13.37□□□□□ -0.27
TCOF1-211ENST00000513346 BMP2KLQ5H9B9 411 aa13.37□□□□□ -0.27
TCOF1-211ENST00000513346 AEBP1Q8IUX7 1158 aa13.37□□□□□ -0.27
TCOF1-211ENST00000513346 RAB3GAP1Q15042 981 aa13.37□□□□□ -0.27
TCOF1-211ENST00000513346 KRT85P78386 507 aa13.36□□□□□ -0.27
TCOF1-211ENST00000513346 NOLC1Q14978 699 aaKnown RBP eCLIP13.36□□□□□ -0.27
TCOF1-211ENST00000513346 TSR1Q2NL82 804 aaKnown RBP13.36□□□□□ -0.27
TCOF1-211ENST00000513346 CREBRFQ8IUR6 639 aa13.36□□□□□ -0.27
TCOF1-211ENST00000513346 SMC5Q8IY18 1101 aa13.36□□□□□ -0.27
TCOF1-211ENST00000513346 RASSF8Q8NHQ8 419 aa13.36□□□□□ -0.27
TCOF1-211ENST00000513346 RBM27Q9P2N5 1060 aaKnown RBP13.36□□□□□ -0.27
TCOF1-211ENST00000513346 RRS1Q15050 365 aaKnown RBP13.36□□□□□ -0.27
TCOF1-211ENST00000513346 ZNF428Q96B54 188 aa13.36□□□□□ -0.27
TCOF1-211ENST00000513346 STRN4Q9NRL3 753 aa13.36□□□□□ -0.27
TCOF1-211ENST00000513346 PCDHB15Q9Y5E8 787 aa13.36□□□□□ -0.27
TCOF1-211ENST00000513346 KINO60870 393 aaKnown RBP13.35□□□□□ -0.27
TCOF1-211ENST00000513346 ADCY5O95622 1261 aa13.35□□□□□ -0.27
TCOF1-211ENST00000513346 UBTFL1P0CB47 393 aaPredicted RBP13.35□□□□□ -0.27
TCOF1-211ENST00000513346 DISP3Q9P2K9 1392 aa13.35□□□□□ -0.27
TCOF1-211ENST00000513346 TOM1O60784 492 aa13.35□□□□□ -0.27
TCOF1-211ENST00000513346 VPS37DQ86XT2 251 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms