RNA–Protein interactions for RNA: ENST00000504181.1

LSM6-204, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM6, Length 549 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-204ENST00000504181 KLHL34Q8N239 644 aa18.89■□□□□ 0.61
LSM6-204ENST00000504181 CRB1P82279 1406 aa18.88■□□□□ 0.61
LSM6-204ENST00000504181 QSER1Q2KHR3 1735 aa18.88■□□□□ 0.61
LSM6-204ENST00000504181 TUBGCP6Q96RT7 1819 aa18.88■□□□□ 0.61
LSM6-204ENST00000504181 DDB1Q16531 1140 aa18.87■□□□□ 0.61
LSM6-204ENST00000504181 NHSQ6T4R5 1651 aa18.86■□□□□ 0.61
LSM6-204ENST00000504181 CPDO75976 1380 aa18.85■□□□□ 0.61
LSM6-204ENST00000504181 HSPA6P17066 643 aa18.85■□□□□ 0.61
LSM6-204ENST00000504181 BTAF1O14981 1849 aa18.84■□□□□ 0.61
LSM6-204ENST00000504181 WASLO00401 505 aaPredicted RBP18.84■□□□□ 0.61
LSM6-204ENST00000504181 ADGRB1O14514 1584 aa18.84■□□□□ 0.61
LSM6-204ENST00000504181 ATP10DQ9P241 1426 aa18.83■□□□□ 0.61
LSM6-204ENST00000504181 ARHGEF28Q8N1W1 1705 aaKnown RBP18.83■□□□□ 0.61
LSM6-204ENST00000504181 TRAK1Q9UPV9 953 aa18.82■□□□□ 0.6
LSM6-204ENST00000504181 MARCH10Q8NA82 808 aaPredicted RBP18.81■□□□□ 0.6
LSM6-204ENST00000504181 COL18A1P39060 1754 aa18.81■□□□□ 0.6
LSM6-204ENST00000504181 AATKQ6ZMQ8 1374 aa18.81■□□□□ 0.6
LSM6-204ENST00000504181 ZBTB7CA1YPR0 619 aa18.8■□□□□ 0.6
LSM6-204ENST00000504181 BCL9O00512 1426 aa18.79■□□□□ 0.6
LSM6-204ENST00000504181 USP19O94966 1318 aa18.78■□□□□ 0.6
LSM6-204ENST00000504181 ABTB2Q8N961 1025 aa18.78■□□□□ 0.6
LSM6-204ENST00000504181 NLGN2Q8NFZ4 835 aa18.78■□□□□ 0.6
LSM6-204ENST00000504181 PPARGC1BQ86YN6 1023 aaKnown RBP18.77■□□□□ 0.6
LSM6-204ENST00000504181 NUDT16Q96DE0 195 aaKnown RBP18.77■□□□□ 0.6
LSM6-204ENST00000504181 GPBP1L1Q9HC44 474 aaPredicted RBP18.76■□□□□ 0.59
LSM6-204ENST00000504181 CAPN15O75808 1086 aa18.75■□□□□ 0.59
LSM6-204ENST00000504181 YBX3P16989 372 aaKnown RBP eCLIP18.75■□□□□ 0.593e-6■□□□□ 8.1
LSM6-204ENST00000504181 TOM1L2Q6ZVM7 507 aa18.75■□□□□ 0.59
LSM6-204ENST00000504181 ACEP12821 1306 aa18.74■□□□□ 0.59
LSM6-204ENST00000504181 POLR3AO14802 1390 aaPredicted RBP18.74■□□□□ 0.59
LSM6-204ENST00000504181 GCP02774 474 aa18.74■□□□□ 0.59
LSM6-204ENST00000504181 ZNF827Q17R98 1081 aa18.74■□□□□ 0.59
LSM6-204ENST00000504181 POLD1P28340 1107 aa18.73■□□□□ 0.59
LSM6-204ENST00000504181 ZNF526Q8TF50 670 aaPredicted RBP18.73■□□□□ 0.59
LSM6-204ENST00000504181 GRIN3BO60391 1043 aa18.72■□□□□ 0.59
LSM6-204ENST00000504181 NLRP13Q86W25 1043 aa18.7■□□□□ 0.58
LSM6-204ENST00000504181 WDR90Q96KV7 1748 aa18.69■□□□□ 0.58
LSM6-204ENST00000504181 SLIT3O75094 1523 aa18.69■□□□□ 0.58
LSM6-204ENST00000504181 ACSBG1Q96GR2 724 aa18.68■□□□□ 0.58
LSM6-204ENST00000504181 CDCA7Q9BWT1 371 aaPredicted RBP18.68■□□□□ 0.58
LSM6-204ENST00000504181 WDR17Q8IZU2 1322 aa18.68■□□□□ 0.58
LSM6-204ENST00000504181 ADCY9O60503 1353 aa18.68■□□□□ 0.58
LSM6-204ENST00000504181 SLC16A10Q8TF71 515 aa18.67■□□□□ 0.58
LSM6-204ENST00000504181 TRPM1Q7Z4N2 1603 aa18.67■□□□□ 0.58
LSM6-204ENST00000504181 PIK3C2AO00443 1686 aa18.66■□□□□ 0.58
LSM6-204ENST00000504181 TNS2Q63HR2 1409 aa18.66■□□□□ 0.58
LSM6-204ENST00000504181 MPHOSPH9Q99550 1183 aa18.65■□□□□ 0.58
LSM6-204ENST00000504181 CDK19Q9BWU1 502 aa18.65■□□□□ 0.58
LSM6-204ENST00000504181 LRRC4BQ9NT99 713 aa18.65■□□□□ 0.58
LSM6-204ENST00000504181 BRD4O60885 1362 aaPredicted RBP18.65■□□□□ 0.58
LSM6-204ENST00000504181 EXOC5O00471 708 aa18.64■□□□□ 0.57
LSM6-204ENST00000504181 COL13A1Q5TAT6 717 aaPredicted RBP18.64■□□□□ 0.57
LSM6-204ENST00000504181 ABCC6O95255 1503 aa18.64■□□□□ 0.57
LSM6-204ENST00000504181 AXIN2Q9Y2T1 843 aa18.63■□□□□ 0.57
LSM6-204ENST00000504181 PNPLA7Q6ZV29 1317 aa18.63■□□□□ 0.57
LSM6-204ENST00000504181 LY75O60449 1722 aa18.63■□□□□ 0.57
LSM6-204ENST00000504181 PLEKHG3A1L390 1219 aa18.62■□□□□ 0.57
LSM6-204ENST00000504181 APLP1P51693 650 aa18.62■□□□□ 0.57
LSM6-204ENST00000504181 AKT1S1Q96B36 256 aa18.62■□□□□ 0.57
LSM6-204ENST00000504181 CCDC61Q9Y6R9 512 aa18.62■□□□□ 0.57
LSM6-204ENST00000504181 USP6P35125 1406 aa18.62■□□□□ 0.57
LSM6-204ENST00000504181 QRICH2Q9H0J4 1663 aa18.62■□□□□ 0.57
LSM6-204ENST00000504181 CPSF1Q10570 1443 aaKnown RBP18.6■□□□□ 0.57
LSM6-204ENST00000504181 DNAJC5GQ8N7S2 189 aa18.6■□□□□ 0.57
LSM6-204ENST00000504181 CSB-PGBD3P0DP91 1061 aa18.59■□□□□ 0.57
LSM6-204ENST00000504181 CARD10Q9BWT7 1032 aa18.59■□□□□ 0.57
LSM6-204ENST00000504181 KIF3CO14782 793 aa18.58■□□□□ 0.56
LSM6-204ENST00000504181 NLRP6P59044 892 aa18.58■□□□□ 0.56
LSM6-204ENST00000504181 PPIP5K1Q6PFW1 1433 aa18.57■□□□□ 0.56
LSM6-204ENST00000504181 TFCP2L1Q9NZI6 479 aa18.57■□□□□ 0.56
LSM6-204ENST00000504181 PRELPP51888 382 aa18.56■□□□□ 0.56
LSM6-204ENST00000504181 TNS4Q8IZW8 715 aa18.56■□□□□ 0.56
LSM6-204ENST00000504181 DOT1LQ8TEK3 1739 aa18.56■□□□□ 0.56
LSM6-204ENST00000504181 PCNTO95613 3336 aa18.56■□□□□ 0.56
LSM6-204ENST00000504181 KDM2AQ9Y2K7 1162 aa18.55■□□□□ 0.56
LSM6-204ENST00000504181 LTN1O94822 1766 aa18.55■□□□□ 0.56
LSM6-204ENST00000504181 CCDC7Q96M83 1385 aa18.55■□□□□ 0.56
LSM6-204ENST00000504181 KCNQ4P56696 695 aa18.53■□□□□ 0.56
LSM6-204ENST00000504181 SLC27A3Q5K4L6 730 aa18.52■□□□□ 0.56
LSM6-204ENST00000504181 SOX12O15370 315 aa18.51■□□□□ 0.55
LSM6-204ENST00000504181 MSL1Q68DK7 614 aa18.51■□□□□ 0.55
LSM6-204ENST00000504181 TAF1LQ8IZX4 1826 aa18.5■□□□□ 0.55
LSM6-204ENST00000504181 C5P01031 1676 aa18.5■□□□□ 0.55
LSM6-204ENST00000504181 ARHGEF25Q86VW2 580 aa18.49■□□□□ 0.55
LSM6-204ENST00000504181 WWC3Q9ULE0 1092 aa18.49■□□□□ 0.55
LSM6-204ENST00000504181 NFAT5O94916 1531 aa18.49■□□□□ 0.55
LSM6-204ENST00000504181 SRPK2P78362 688 aaKnown RBP18.48■□□□□ 0.55
LSM6-204ENST00000504181 DCAF11Q8TEB1 546 aa18.48■□□□□ 0.55
LSM6-204ENST00000504181 HTRA3P83110 453 aa18.47■□□□□ 0.55
LSM6-204ENST00000504181 USP54Q70EL1 1684 aa18.47■□□□□ 0.55
LSM6-204ENST00000504181 TOMM70O94826 608 aa18.46■□□□□ 0.55
LSM6-204ENST00000504181 KLRG1Q96E93 195 aa18.46■□□□□ 0.55
LSM6-204ENST00000504181 CD2APQ9Y5K6 639 aa18.46■□□□□ 0.55
LSM6-204ENST00000504181 KIAA1210Q9ULL0 1709 aa18.46■□□□□ 0.55
LSM6-204ENST00000504181 CICQ96RK0 1608 aaPredicted RBP18.45■□□□□ 0.54
LSM6-204ENST00000504181 SLC34A2O95436 690 aa18.45■□□□□ 0.54
LSM6-204ENST00000504181 COL23A1Q86Y22 540 aaPredicted RBP18.45■□□□□ 0.54
LSM6-204ENST00000504181 CABP2Q9NPB3 220 aa18.45■□□□□ 0.54
LSM6-204ENST00000504181 IL2RBP14784 551 aa18.44■□□□□ 0.54
LSM6-204ENST00000504181 JMYQ8N9B5 988 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms