RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 USP17L19D6RCP7 530 aa6.85□□□□□ -1.31
VPS13D-207ENST00000476169 USP17L20D6RJB6 530 aa6.85□□□□□ -1.31
VPS13D-207ENST00000476169 RBM25P49756 843 aaKnown RBP6.85□□□□□ -1.31
VPS13D-207ENST00000476169 MFAP1P55081 439 aaKnown RBP6.85□□□□□ -1.31
VPS13D-207ENST00000476169 USP17L24Q0WX57 530 aa6.85□□□□□ -1.31
VPS13D-207ENST00000476169 TJAP1Q5JTD0 557 aa6.85□□□□□ -1.31
VPS13D-207ENST00000476169 TMEM164Q5U3C3 297 aa6.85□□□□□ -1.31
VPS13D-207ENST00000476169 LARP1Q6PKG0 1096 aaKnown RBP6.85□□□□□ -1.31
VPS13D-207ENST00000476169 PHTF2Q8N3S3 785 aa6.85□□□□□ -1.31
VPS13D-207ENST00000476169 ZNF516Q92618 1163 aa6.85□□□□□ -1.31
VPS13D-207ENST00000476169 MYT1LQ9UL68 1186 aa6.85□□□□□ -1.31
VPS13D-207ENST00000476169 POTEMA6NI47 508 aa6.84□□□□□ -1.31
VPS13D-207ENST00000476169 ATP5J2-PTCD1G3V325 749 aa6.84□□□□□ -1.31
VPS13D-207ENST00000476169 LZTS3O60299 673 aaPredicted RBP6.84□□□□□ -1.31
VPS13D-207ENST00000476169 RASA1P20936 1047 aa6.84□□□□□ -1.31
VPS13D-207ENST00000476169 AGERQ15109 404 aa6.84□□□□□ -1.31
VPS13D-207ENST00000476169 EML3Q32P44 896 aa6.84□□□□□ -1.31
VPS13D-207ENST00000476169 MAP7D1Q3KQU3 841 aa6.84□□□□□ -1.31
VPS13D-207ENST00000476169 LINC01559Q495D7 138 aa6.84□□□□□ -1.31
VPS13D-207ENST00000476169 CRTC2Q53ET0 693 aaPredicted RBP6.84□□□□□ -1.31
VPS13D-207ENST00000476169 IVNS1ABPQ9Y6Y0 642 aa6.84□□□□□ -1.31
VPS13D-207ENST00000476169 S1PR4O95977 384 aa6.83□□□□□ -1.32
VPS13D-207ENST00000476169 FOXD4L5Q5VV16 416 aaPredicted RBP6.83□□□□□ -1.32
VPS13D-207ENST00000476169 BPHLQ86WA6 291 aaPredicted RBP6.83□□□□□ -1.32
VPS13D-207ENST00000476169 RGS22Q8NE09 1264 aa6.83□□□□□ -1.32
VPS13D-207ENST00000476169 FOXD4L4Q8WXT5 416 aaPredicted RBP6.83□□□□□ -1.32
VPS13D-207ENST00000476169 BAP1Q92560 729 aa6.83□□□□□ -1.32
VPS13D-207ENST00000476169 PTK7Q13308 1070 aa6.82□□□□□ -1.32
VPS13D-207ENST00000476169 SH3RF1Q7Z6J0 888 aa6.82□□□□□ -1.32
VPS13D-207ENST00000476169 FAM200AQ8TCP9 573 aa6.82□□□□□ -1.32
VPS13D-207ENST00000476169 FOXJ1Q92949 421 aa6.82□□□□□ -1.32
VPS13D-207ENST00000476169 CHIC2Q9UKJ5 165 aa6.82□□□□□ -1.32
VPS13D-207ENST00000476169 DOLKQ9UPQ8 538 aa6.82□□□□□ -1.32
VPS13D-207ENST00000476169 FCF1Q9Y324 198 aaKnown RBP6.82□□□□□ -1.32
VPS13D-207ENST00000476169 ERFEQ4G0M1 354 aa6.81□□□□□ -1.32
VPS13D-207ENST00000476169 TRAF7Q6Q0C0 670 aa6.81□□□□□ -1.32
VPS13D-207ENST00000476169 TRIM50Q86XT4 487 aa6.81□□□□□ -1.32
VPS13D-207ENST00000476169 ZNF511Q8NB15 262 aa6.81□□□□□ -1.32
VPS13D-207ENST00000476169 NKX2-3Q8TAU0 364 aa6.81□□□□□ -1.32
VPS13D-207ENST00000476169 SLC10A4Q96EP9 437 aa6.81□□□□□ -1.32
VPS13D-207ENST00000476169 NOD1Q9Y239 953 aa6.81□□□□□ -1.32
VPS13D-207ENST00000476169 GIGYF1O75420 1035 aaPredicted RBP6.8□□□□□ -1.32
VPS13D-207ENST00000476169 TSGA10IPQ3SY00 556 aa6.8□□□□□ -1.32
VPS13D-207ENST00000476169 OXLD1Q5BKU9 147 aa6.8□□□□□ -1.32
VPS13D-207ENST00000476169 ANKMY2Q8IV38 441 aa6.8□□□□□ -1.32
VPS13D-207ENST00000476169 OGFOD1Q8N543 542 aa6.8□□□□□ -1.32
VPS13D-207ENST00000476169 ZNF594Q96JF6 807 aaPredicted RBP6.8□□□□□ -1.32
VPS13D-207ENST00000476169 CCDC85AQ96PX6 553 aaPredicted RBP6.8□□□□□ -1.32
VPS13D-207ENST00000476169 CDCA7Q9BWT1 371 aaPredicted RBP6.8□□□□□ -1.32
VPS13D-207ENST00000476169 ATP1A2P50993 1020 aa6.79□□□□□ -1.32
VPS13D-207ENST00000476169 DPYDQ12882 1025 aa6.79□□□□□ -1.32
VPS13D-207ENST00000476169 RNF20Q5VTR2 975 aa6.79□□□□□ -1.32
VPS13D-207ENST00000476169 DNAAF2Q9NVR5 837 aaKnown RBP6.79□□□□□ -1.32
VPS13D-207ENST00000476169 CLDN10P78369 228 aa6.78□□□□□ -1.32
VPS13D-207ENST00000476169 C4orf48Q5BLP8 95 aa6.78□□□□□ -1.32
VPS13D-207ENST00000476169 SND1Q7KZF4 910 aaKnown RBP eCLIP6.78□□□□□ -1.32
VPS13D-207ENST00000476169 GNEQ9Y223 722 aaKnown RBP6.78□□□□□ -1.32
VPS13D-207ENST00000476169 GTF2IP78347 998 aa6.77□□□□□ -1.33
VPS13D-207ENST00000476169 NBPF20Q3BBV1 942 aa6.77□□□□□ -1.33
VPS13D-207ENST00000476169 LARGE2Q8N3Y3 721 aa6.77□□□□□ -1.33
VPS13D-207ENST00000476169 CCER1Q8TC90 406 aaPredicted RBP6.77□□□□□ -1.33
VPS13D-207ENST00000476169 CLP1Q92989 425 aaKnown RBP6.77□□□□□ -1.33
VPS13D-207ENST00000476169 ZNF428Q96B54 188 aa6.77□□□□□ -1.33
VPS13D-207ENST00000476169 C1QTNF2Q9BXJ5 285 aa6.77□□□□□ -1.33
VPS13D-207ENST00000476169 RBM19Q9Y4C8 960 aaKnown RBP6.77□□□□□ -1.33
VPS13D-207ENST00000476169 ATP2B4P23634 1241 aa6.76□□□□□ -1.33
VPS13D-207ENST00000476169 SSFA2P28290 1259 aa6.76□□□□□ -1.33
VPS13D-207ENST00000476169 SH3BP2P78314 561 aa6.76□□□□□ -1.33
VPS13D-207ENST00000476169 FAM69CQ0P6D2 419 aa6.76□□□□□ -1.33
VPS13D-207ENST00000476169 SWI5Q1ZZU3 235 aa6.76□□□□□ -1.33
VPS13D-207ENST00000476169 CCDC27Q2M243 656 aa6.76□□□□□ -1.33
VPS13D-207ENST00000476169 PHLDB3Q6NSJ2 640 aa6.76□□□□□ -1.33
VPS13D-207ENST00000476169 CDV3Q9UKY7 258 aaKnown RBP6.76□□□□□ -1.33
VPS13D-207ENST00000476169 PCDHB11Q9Y5F2 797 aa6.76□□□□□ -1.33
VPS13D-207ENST00000476169 ESPNB1AK53 854 aa6.75□□□□□ -1.33
VPS13D-207ENST00000476169 PPEF1O14829 653 aaPredicted RBP6.75□□□□□ -1.33
VPS13D-207ENST00000476169 ZBTB24O43167 697 aaPredicted RBP6.75□□□□□ -1.33
VPS13D-207ENST00000476169 ARID4AP29374 1257 aaPredicted RBP6.75□□□□□ -1.33
VPS13D-207ENST00000476169 PSME1Q06323 249 aa6.75□□□□□ -1.33
VPS13D-207ENST00000476169 CDAN1Q8IWY9 1227 aa6.75□□□□□ -1.33
VPS13D-207ENST00000476169 TRMT44Q8IYL2 757 aaKnown RBP6.75□□□□□ -1.33
VPS13D-207ENST00000476169 SIX5Q8N196 739 aa6.75□□□□□ -1.33
VPS13D-207ENST00000476169 SIRT1Q96EB6 747 aa6.75□□□□□ -1.33
VPS13D-207ENST00000476169 SLAIN2Q9P270 581 aa6.75□□□□□ -1.33
VPS13D-207ENST00000476169 PCDH10Q9P2E7 1040 aa6.75□□□□□ -1.33
VPS13D-207ENST00000476169 KIAA1024Q9UPX6 916 aa6.75□□□□□ -1.33
VPS13D-207ENST00000476169 LOC105371045A0A1W2PR82 267 aa6.74□□□□□ -1.33
VPS13D-207ENST00000476169 RAB15P59190 212 aa6.74□□□□□ -1.33
VPS13D-207ENST00000476169 CCDC102BQ68D86 513 aa6.74□□□□□ -1.33
VPS13D-207ENST00000476169 TXNDC2Q86VQ3 553 aa6.74□□□□□ -1.33
VPS13D-207ENST00000476169 CCDC125Q86Z20 511 aa6.74□□□□□ -1.33
VPS13D-207ENST00000476169 SEPT12Q8IYM1 358 aa6.74□□□□□ -1.33
VPS13D-207ENST00000476169 E9PSI1 815 aa6.73□□□□□ -1.33
VPS13D-207ENST00000476169 ZBTB7BO15156 539 aaPredicted RBP6.73□□□□□ -1.33
VPS13D-207ENST00000476169 IGSF3O75054 1194 aa6.73□□□□□ -1.33
VPS13D-207ENST00000476169 SEC13P55735 322 aa6.73□□□□□ -1.33
VPS13D-207ENST00000476169 KCNC4Q03721 635 aa6.73□□□□□ -1.33
VPS13D-207ENST00000476169 USP4Q13107 963 aa6.73□□□□□ -1.33
VPS13D-207ENST00000476169 TPCN2Q8NHX9 752 aa6.73□□□□□ -1.33
VPS13D-207ENST00000476169 RNF223E7ERA6 249 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms