RNA–Protein interactions for RNA: ENST00000475401.1

TM9SF3-204, Transcript of transmembrane 9 superfamily member 3, humanhuman

TSL 2

Gene TM9SF3, Length 511 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3-204ENST00000475401 CDK15Q96Q40 435 aa11.13□□□□□ -0.63
TM9SF3-204ENST00000475401 TLL2Q9Y6L7 1015 aa11.13□□□□□ -0.63
TM9SF3-204ENST00000475401 SLFNL1Q499Z3 407 aa11.12□□□□□ -0.63
TM9SF3-204ENST00000475401 KCTD15Q96SI1 283 aaPredicted RBP11.12□□□□□ -0.63
TM9SF3-204ENST00000475401 ALG2Q9H553 416 aa11.12□□□□□ -0.63
TM9SF3-204ENST00000475401 CCDC125Q86Z20 511 aa11.11□□□□□ -0.63
TM9SF3-204ENST00000475401 ADH1CP00326 375 aa11.1□□□□□ -0.63
TM9SF3-204ENST00000475401 NR5A1Q13285 461 aa11.1□□□□□ -0.63
TM9SF3-204ENST00000475401 SEPT12Q8IYM1 358 aa11.1□□□□□ -0.63
TM9SF3-204ENST00000475401 CEP126Q9P2H0 1117 aa11.1□□□□□ -0.63
TM9SF3-204ENST00000475401 SUPT5HO00267 1087 aaKnown RBP11.09□□□□□ -0.63
TM9SF3-204ENST00000475401 FSHRP23945 695 aa11.09□□□□□ -0.63
TM9SF3-204ENST00000475401 DHX9Q08211 1270 aaKnown RBP11.08□□□□□ -0.64
TM9SF3-204ENST00000475401 RNF135Q8IUD6 432 aa11.08□□□□□ -0.64
TM9SF3-204ENST00000475401 CCDC97Q96F63 343 aaPredicted RBP11.08□□□□□ -0.64
TM9SF3-204ENST00000475401 ARID3CA6NKF2 412 aa11.07□□□□□ -0.64
TM9SF3-204ENST00000475401 GIGYF1O75420 1035 aaPredicted RBP11.07□□□□□ -0.64
TM9SF3-204ENST00000475401 RAB15P59190 212 aa11.07□□□□□ -0.64
TM9SF3-204ENST00000475401 TRIM67Q6ZTA4 783 aa11.07□□□□□ -0.64
TM9SF3-204ENST00000475401 TOR4AQ9NXH8 423 aa11.07□□□□□ -0.64
TM9SF3-204ENST00000475401 GFRA3O60609 400 aa11.06□□□□□ -0.64
TM9SF3-204ENST00000475401 LAPTM4AQ15012 233 aa11.06□□□□□ -0.64
TM9SF3-204ENST00000475401 GRM5P41594 1212 aa11.05□□□□□ -0.64
TM9SF3-204ENST00000475401 CCDC116Q8IYX3 515 aa11.05□□□□□ -0.64
TM9SF3-204ENST00000475401 ADAMTS19Q8TE59 1207 aa11.05□□□□□ -0.64
TM9SF3-204ENST00000475401 ESF1Q9H501 851 aaKnown RBP11.05□□□□□ -0.64
TM9SF3-204ENST00000475401 ESPNB1AK53 854 aa11.04□□□□□ -0.64
TM9SF3-204ENST00000475401 J3QL48 77 aa11.04□□□□□ -0.64
TM9SF3-204ENST00000475401 NNTQ13423 1086 aa11.04□□□□□ -0.64
TM9SF3-204ENST00000475401 INTS6LQ5JSJ4 861 aaKnown RBP11.04□□□□□ -0.64
TM9SF3-204ENST00000475401 SERPINA10Q9UK55 444 aa11.04□□□□□ -0.64
TM9SF3-204ENST00000475401 NFATC2IPQ8NCF5 419 aa11.03□□□□□ -0.64
TM9SF3-204ENST00000475401 PGPEP1Q9NXJ5 209 aa11.03□□□□□ -0.64
TM9SF3-204ENST00000475401 FAM187AA6NFU0 413 aa11.02□□□□□ -0.65
TM9SF3-204ENST00000475401 NRG2O14511 850 aaPredicted RBP11.02□□□□□ -0.65
TM9SF3-204ENST00000475401 EMILIN1Q9Y6C2 1016 aa11.02□□□□□ -0.65
TM9SF3-204ENST00000475401 SKIP12755 728 aa11.01□□□□□ -0.65
TM9SF3-204ENST00000475401 SMPD1P17405 629 aa11.01□□□□□ -0.65
TM9SF3-204ENST00000475401 MAP7D1Q3KQU3 841 aa11.01□□□□□ -0.65
TM9SF3-204ENST00000475401 PKDCCQ504Y2 493 aa11.01□□□□□ -0.65
TM9SF3-204ENST00000475401 IRX2Q9BZI1 471 aaPredicted RBP11.01□□□□□ -0.65
TM9SF3-204ENST00000475401 DOLKQ9UPQ8 538 aa11.01□□□□□ -0.65
TM9SF3-204ENST00000475401 PCDHB11Q9Y5F2 797 aa11.01□□□□□ -0.65
TM9SF3-204ENST00000475401 ERVH48-1M5A8F1 160 aa10.99□□□□□ -0.65
TM9SF3-204ENST00000475401 PPP1R26Q5T8A7 1209 aaPredicted RBP10.99□□□□□ -0.65
TM9SF3-204ENST00000475401 PLPP7Q8NBV4 271 aa10.99□□□□□ -0.65
TM9SF3-204ENST00000475401 SIRT1Q96EB6 747 aa10.99□□□□□ -0.65
TM9SF3-204ENST00000475401 ATP9BO43861 1147 aa10.98□□□□□ -0.65
TM9SF3-204ENST00000475401 LZTS3O60299 673 aaPredicted RBP10.98□□□□□ -0.65
TM9SF3-204ENST00000475401 NR3C2P08235 984 aa10.98□□□□□ -0.65
TM9SF3-204ENST00000475401 PHTF2Q8N3S3 785 aa10.98□□□□□ -0.65
TM9SF3-204ENST00000475401 PPP1R12CQ9BZL4 782 aa10.98□□□□□ -0.65
TM9SF3-204ENST00000475401 PIK3CDO00329 1044 aa10.97□□□□□ -0.65
TM9SF3-204ENST00000475401 DGAT1O75907 488 aa10.97□□□□□ -0.65
TM9SF3-204ENST00000475401 MYCP01106 439 aaPredicted RBP10.97□□□□□ -0.65
TM9SF3-204ENST00000475401 WDR4P57081 412 aaKnown RBP10.97□□□□□ -0.65
TM9SF3-204ENST00000475401 MYT1Q01538 1121 aa10.97□□□□□ -0.65
TM9SF3-204ENST00000475401 CCDC82Q8N4S0 544 aa10.97□□□□□ -0.65
TM9SF3-204ENST00000475401 UCN2Q96RP3 112 aa10.97□□□□□ -0.65
TM9SF3-204ENST00000475401 TFIP11Q9UBB9 837 aaKnown RBP10.97□□□□□ -0.65
TM9SF3-204ENST00000475401 PALM3A6NDB9 673 aaPredicted RBP10.96□□□□□ -0.65
TM9SF3-204ENST00000475401 USP4Q13107 963 aa10.96□□□□□ -0.65
TM9SF3-204ENST00000475401 EML3Q32P44 896 aa10.96□□□□□ -0.65
TM9SF3-204ENST00000475401 OXLD1Q5BKU9 147 aa10.96□□□□□ -0.65
TM9SF3-204ENST00000475401 TBC1D9Q6ZT07 1266 aa10.96□□□□□ -0.65
TM9SF3-204ENST00000475401 USP17L5A8MUK1 530 aa10.95□□□□□ -0.66
TM9SF3-204ENST00000475401 HPS1Q92902 700 aa10.95□□□□□ -0.66
TM9SF3-204ENST00000475401 CCDC85AQ96PX6 553 aaPredicted RBP10.95□□□□□ -0.66
TM9SF3-204ENST00000475401 ZIC2O95409 532 aaPredicted RBP10.94□□□□□ -0.66
TM9SF3-204ENST00000475401 C1orf115Q9H7X2 142 aa10.94□□□□□ -0.66
TM9SF3-204ENST00000475401 TMPRSS4Q9NRS4 437 aa10.94□□□□□ -0.66
TM9SF3-204ENST00000475401 CHIC2Q9UKJ5 165 aa10.94□□□□□ -0.66
TM9SF3-204ENST00000475401 LMOD1P29536 600 aaPredicted RBP10.93□□□□□ -0.66
TM9SF3-204ENST00000475401 CC2D2BQ6DHV5 1058 aa10.93□□□□□ -0.66
TM9SF3-204ENST00000475401 ZNF784Q8NCA9 323 aaPredicted RBP10.93□□□□□ -0.66
TM9SF3-204ENST00000475401 ARID3AQ99856 593 aa10.93□□□□□ -0.66
TM9SF3-204ENST00000475401 CYLDQ9NQC7 956 aa10.93□□□□□ -0.66
TM9SF3-204ENST00000475401 USP17L3A6NCW0 530 aa10.92□□□□□ -0.66
TM9SF3-204ENST00000475401 USP17L4A6NCW7 530 aa10.92□□□□□ -0.66
TM9SF3-204ENST00000475401 USP17L2Q6R6M4 530 aa10.92□□□□□ -0.66
TM9SF3-204ENST00000475401 USP17L1Q7RTZ2 530 aa10.92□□□□□ -0.66
TM9SF3-204ENST00000475401 PLEKHM2Q8IWE5 1019 aa10.92□□□□□ -0.66
TM9SF3-204ENST00000475401 ITPKCQ96DU7 683 aa10.92□□□□□ -0.66
TM9SF3-204ENST00000475401 NOD1Q9Y239 953 aa10.92□□□□□ -0.66
TM9SF3-204ENST00000475401 MAFBQ9Y5Q3 323 aaPredicted RBP10.92□□□□□ -0.66
TM9SF3-204ENST00000475401 CAPN5O15484 640 aaPredicted RBP10.91□□□□□ -0.66
TM9SF3-204ENST00000475401 NCOA4Q13772 614 aa10.91□□□□□ -0.66
TM9SF3-204ENST00000475401 CTC1Q2NKJ3 1217 aa10.91□□□□□ -0.66
TM9SF3-204ENST00000475401 DEPDC4Q8N2C3 294 aa10.91□□□□□ -0.66
TM9SF3-204ENST00000475401 AVPP01185 164 aa10.9□□□□□ -0.66
TM9SF3-204ENST00000475401 TIMP2P16035 220 aa10.9□□□□□ -0.66
TM9SF3-204ENST00000475401 ERVK-9P63128 1117 aa10.9□□□□□ -0.66
TM9SF3-204ENST00000475401 TSGA10IPQ3SY00 556 aa10.9□□□□□ -0.66
TM9SF3-204ENST00000475401 TRAF7Q6Q0C0 670 aa10.9□□□□□ -0.66
TM9SF3-204ENST00000475401 TRIM50Q86XT4 487 aa10.9□□□□□ -0.66
TM9SF3-204ENST00000475401 CDCA7Q9BWT1 371 aaPredicted RBP10.9□□□□□ -0.66
TM9SF3-204ENST00000475401 UPP2O95045 317 aa10.89□□□□□ -0.67
TM9SF3-204ENST00000475401 RFX1P22670 979 aa10.89□□□□□ -0.67
TM9SF3-204ENST00000475401 ZFAND3Q9H8U3 227 aa10.89□□□□□ -0.67
TM9SF3-204ENST00000475401 CYP2U1Q7Z449 544 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms