RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 YEATS2Q9ULM3 1422 aa7.57□□□□□ -1.2
HERC4-209ENST00000473533 MSNP26038 577 aaKnown RBP7.57□□□□□ -1.2
HERC4-209ENST00000473533 ANKRD45Q5TZF3 282 aa7.57□□□□□ -1.2
HERC4-209ENST00000473533 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.57□□□□□ -1.2
HERC4-209ENST00000473533 LNPKQ9C0E8 428 aa7.57□□□□□ -1.2
HERC4-209ENST00000473533 FAM135BQ49AJ0 1406 aa7.57□□□□□ -1.2
HERC4-209ENST00000473533 ST18O60284 1047 aa7.57□□□□□ -1.2
HERC4-209ENST00000473533 NFE2L2Q16236 605 aa7.57□□□□□ -1.2
HERC4-209ENST00000473533 INTS3Q68E01 1043 aaKnown RBP7.57□□□□□ -1.2
HERC4-209ENST00000473533 TMEM132EQ6IEE7 984 aa7.57□□□□□ -1.2
HERC4-209ENST00000473533 GGT6Q6P531 493 aa7.56□□□□□ -1.2
HERC4-209ENST00000473533 MAP7D2Q96T17 732 aa7.56□□□□□ -1.2
HERC4-209ENST00000473533 PPP1R9BQ96SB3 815 aa7.56□□□□□ -1.2
HERC4-209ENST00000473533 CABP2Q9NPB3 220 aa7.56□□□□□ -1.2
HERC4-209ENST00000473533 REC8O95072 547 aa7.55□□□□□ -1.2
HERC4-209ENST00000473533 NASPP49321 788 aaPredicted RBP7.55□□□□□ -1.2
HERC4-209ENST00000473533 ZSCAN30Q86W11 494 aa7.55□□□□□ -1.2
HERC4-209ENST00000473533 ABCC4O15439 1325 aa7.55□□□□□ -1.2
HERC4-209ENST00000473533 DLC1Q96QB1 1528 aa7.55□□□□□ -1.2
HERC4-209ENST00000473533 FYB1O15117 783 aa7.55□□□□□ -1.2
HERC4-209ENST00000473533 ZBTB7BO15156 539 aaPredicted RBP7.55□□□□□ -1.2
HERC4-209ENST00000473533 MCM5P33992 734 aa7.55□□□□□ -1.2
HERC4-209ENST00000473533 MCM2P49736 904 aa7.55□□□□□ -1.2
HERC4-209ENST00000473533 DDX49Q9Y6V7 483 aaKnown RBP7.55□□□□□ -1.2
HERC4-209ENST00000473533 LRRC7Q96NW7 1537 aa7.55□□□□□ -1.2
HERC4-209ENST00000473533 YTHDC2Q9H6S0 1430 aaKnown RBP7.55□□□□□ -1.2
HERC4-209ENST00000473533 CSPP1Q1MSJ5 1256 aa7.55□□□□□ -1.2
HERC4-209ENST00000473533 MTERF4Q7Z6M4 381 aaKnown RBP7.55□□□□□ -1.2
HERC4-209ENST00000473533 RPAP2Q8IXW5 612 aaPredicted RBP7.55□□□□□ -1.2
HERC4-209ENST00000473533 MRPL50Q8N5N7 158 aaKnown RBP7.55□□□□□ -1.2
HERC4-209ENST00000473533 ARXQ96QS3 562 aa7.55□□□□□ -1.2
HERC4-209ENST00000473533 GGNBP2Q9H3C7 697 aa7.55□□□□□ -1.2
HERC4-209ENST00000473533 PTPRMP28827 1452 aa7.54□□□□□ -1.2
HERC4-209ENST00000473533 ZNF445P59923 1031 aa7.54□□□□□ -1.2
HERC4-209ENST00000473533 TBC1D9Q6ZT07 1266 aa7.54□□□□□ -1.2
HERC4-209ENST00000473533 CDK12Q9NYV4 1490 aaPredicted RBP7.54□□□□□ -1.2
HERC4-209ENST00000473533 HMMRO75330 724 aa7.54□□□□□ -1.2
HERC4-209ENST00000473533 KLHL34Q8N239 644 aa7.54□□□□□ -1.2
HERC4-209ENST00000473533 PANK2Q9BZ23 570 aa7.54□□□□□ -1.2
HERC4-209ENST00000473533 CPSF1Q10570 1443 aaKnown RBP7.54□□□□□ -1.2
HERC4-209ENST00000473533 SYAP1Q96A49 352 aaPredicted RBP7.54□□□□□ -1.2
HERC4-209ENST00000473533 AATKQ6ZMQ8 1374 aa7.53□□□□□ -1.2
HERC4-209ENST00000473533 MBD3O95983 291 aa7.53□□□□□ -1.2
HERC4-209ENST00000473533 PRKAR2BP31323 418 aa7.53□□□□□ -1.2
HERC4-209ENST00000473533 VAMP4O75379 141 aa7.53□□□□□ -1.2
HERC4-209ENST00000473533 MCCP23508 829 aa7.53□□□□□ -1.2
HERC4-209ENST00000473533 BAG4O95429 457 aaKnown RBP7.53□□□□□ -1.2
HERC4-209ENST00000473533 PPP6R1Q9UPN7 881 aa7.53□□□□□ -1.2
HERC4-209ENST00000473533 EDC4Q6P2E9 1401 aaKnown RBP7.52□□□□□ -1.2
HERC4-209ENST00000473533 TWISTNBQ3B726 338 aaPredicted RBP7.52□□□□□ -1.21
HERC4-209ENST00000473533 PTPRCP08575 1304 aa7.52□□□□□ -1.21
HERC4-209ENST00000473533 PHF14O94880 888 aa7.52□□□□□ -1.21
HERC4-209ENST00000473533 TTC22Q5TAA0 569 aa7.52□□□□□ -1.21
HERC4-209ENST00000473533 PDCL3Q9H2J4 239 aa7.52□□□□□ -1.21
HERC4-209ENST00000473533 DCTPP1Q9H773 170 aa7.52□□□□□ -1.21
HERC4-209ENST00000473533 ZNF853P0CG23 659 aa7.51□□□□□ -1.21
HERC4-209ENST00000473533 CD163L1Q9NR16 1453 aa7.51□□□□□ -1.21
HERC4-209ENST00000473533 ARHGEF40Q8TER5 1519 aa7.51□□□□□ -1.21
HERC4-209ENST00000473533 EPB41L2O43491 1005 aaKnown RBP7.51□□□□□ -1.21
HERC4-209ENST00000473533 PRAM1Q96QH2 718 aa7.51□□□□□ -1.21
HERC4-209ENST00000473533 TMEM131LA2VDJ0 1609 aa7.51□□□□□ -1.21
HERC4-209ENST00000473533 DIP2CQ9Y2E4 1556 aa7.51□□□□□ -1.21
HERC4-209ENST00000473533 OFD1O75665 1012 aa7.51□□□□□ -1.21
HERC4-209ENST00000473533 NCLP19338 710 aaKnown RBP7.51□□□□□ -1.21
HERC4-209ENST00000473533 KIF2CQ99661 725 aa7.51□□□□□ -1.21
HERC4-209ENST00000473533 CDK19Q9BWU1 502 aa7.51□□□□□ -1.21
HERC4-209ENST00000473533 PREX1Q8TCU6 1659 aa7.51□□□□□ -1.21
HERC4-209ENST00000473533 MINK1Q8N4C8 1332 aaPredicted RBP7.51□□□□□ -1.21
HERC4-209ENST00000473533 SIGLEC1Q9BZZ2 1709 aa7.5□□□□□ -1.21
HERC4-209ENST00000473533 ANKRD44Q8N8A2 993 aa7.5□□□□□ -1.21
HERC4-209ENST00000473533 CCDC39Q9UFE4 941 aa7.5□□□□□ -1.21
HERC4-209ENST00000473533 CFAP65Q6ZU64 1925 aaKnown RBP7.5□□□□□ -1.21
HERC4-209ENST00000473533 KIAA0232Q92628 1395 aa7.5□□□□□ -1.21
HERC4-209ENST00000473533 STK26Q9P289 416 aa7.5□□□□□ -1.21
HERC4-209ENST00000473533 RIMS2Q9UQ26 1411 aa7.5□□□□□ -1.21
HERC4-209ENST00000473533 IDI1Q13907 227 aa7.5□□□□□ -1.21
HERC4-209ENST00000473533 CYB5RLQ6IPT4 315 aa7.5□□□□□ -1.21
HERC4-209ENST00000473533 ALKQ9UM73 1620 aa7.5□□□□□ -1.21
HERC4-209ENST00000473533 SSFA2P28290 1259 aa7.49□□□□□ -1.21
HERC4-209ENST00000473533 PLEKHM2Q8IWE5 1019 aa7.49□□□□□ -1.21
HERC4-209ENST00000473533 GAS2L2Q8NHY3 880 aa7.49□□□□□ -1.21
HERC4-209ENST00000473533 SENP3Q9H4L4 574 aaPredicted RBP7.49□□□□□ -1.21
HERC4-209ENST00000473533 ERC2O15083 957 aa7.49□□□□□ -1.21
HERC4-209ENST00000473533 COG3Q96JB2 828 aa7.49□□□□□ -1.21
HERC4-209ENST00000473533 USP26Q9BXU7 913 aa7.49□□□□□ -1.21
HERC4-209ENST00000473533 POLKQ9UBT6 870 aa7.49□□□□□ -1.21
HERC4-209ENST00000473533 STAG3Q9UJ98 1225 aa7.49□□□□□ -1.21
HERC4-209ENST00000473533 RIMBP3CA6NJZ7 1639 aa7.49□□□□□ -1.21
HERC4-209ENST00000473533 RIMBP3BA6NNM3 1639 aa7.49□□□□□ -1.21
HERC4-209ENST00000473533 RIMBP3Q9UFD9 1639 aa7.49□□□□□ -1.21
HERC4-209ENST00000473533 ZNF500O60304 480 aaPredicted RBP7.49□□□□□ -1.21
HERC4-209ENST00000473533 ANAPC15P60006 121 aa7.49□□□□□ -1.21
HERC4-209ENST00000473533 SAFB2Q14151 953 aaKnown RBP eCLIP7.49□□□□□ -1.212e-6■■■■□ 19.5
HERC4-209ENST00000473533 MCTP1Q6DN14 999 aa7.49□□□□□ -1.21
HERC4-209ENST00000473533 MBIPQ9NS73 344 aa7.49□□□□□ -1.21
HERC4-209ENST00000473533 SSH2Q76I76 1423 aa7.48□□□□□ -1.21
HERC4-209ENST00000473533 CYP2E1P05181 493 aaPredicted RBP7.48□□□□□ -1.21
HERC4-209ENST00000473533 HDGFP51858 240 aaKnown RBP7.48□□□□□ -1.21
HERC4-209ENST00000473533 CABP1Q9NZU7 370 aa7.48□□□□□ -1.21
HERC4-209ENST00000473533 NOL7Q9UMY1 257 aaKnown RBP7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms