RNA–Protein interactions for RNA: ENST00000469415.1

MCF2L-221, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 1 (best)

Gene MCF2L, Length 3,027 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-221ENST00000469415 CT47B1P0C2W7 299 aaPredicted RBP22.51■■□□□ 1.19
MCF2L-221ENST00000469415 FOXO3O43524 673 aa22.5■■□□□ 1.19
MCF2L-221ENST00000469415 HDGFP51858 240 aaKnown RBP22.5■■□□□ 1.19
MCF2L-221ENST00000469415 GNAI1P63096 354 aa22.5■■□□□ 1.19
MCF2L-221ENST00000469415 ZBTB7CA1YPR0 619 aa22.5■■□□□ 1.19
MCF2L-221ENST00000469415 LTV1Q96GA3 475 aaPredicted RBP22.5■■□□□ 1.19
MCF2L-221ENST00000469415 USP35Q9P2H5 1018 aa22.5■■□□□ 1.19
MCF2L-221ENST00000469415 LRRC7Q96NW7 1537 aa22.5■■□□□ 1.19
MCF2L-221ENST00000469415 EIF4A2Q14240 407 aaKnown RBP22.49■■□□□ 1.19
MCF2L-221ENST00000469415 USP32Q8NFA0 1604 aa22.49■■□□□ 1.19
MCF2L-221ENST00000469415 IL16Q14005 1332 aa22.49■■□□□ 1.19
MCF2L-221ENST00000469415 TBC1D2Q9BYX2 928 aa22.49■■□□□ 1.19
MCF2L-221ENST00000469415 DIP2BQ9P265 1576 aa22.49■■□□□ 1.19
MCF2L-221ENST00000469415 MRPL50Q8N5N7 158 aaKnown RBP22.48■■□□□ 1.19
MCF2L-221ENST00000469415 NGDNQ8NEJ9 315 aaKnown RBP22.48■■□□□ 1.19
MCF2L-221ENST00000469415 NECTIN2Q92692 538 aa22.48■■□□□ 1.19
MCF2L-221ENST00000469415 TNRQ92752 1358 aa22.48■■□□□ 1.19
MCF2L-221ENST00000469415 C22orf23Q9BZE7 217 aa22.47■■□□□ 1.19
MCF2L-221ENST00000469415 GSE1Q14687 1217 aa22.47■■□□□ 1.19
MCF2L-221ENST00000469415 TBC1D32Q96NH3 1257 aa22.47■■□□□ 1.19
MCF2L-221ENST00000469415 CPS1P31327 1500 aa22.47■■□□□ 1.19
MCF2L-221ENST00000469415 PPP6R1Q9UPN7 881 aa22.46■■□□□ 1.19
MCF2L-221ENST00000469415 FOXD4L1Q9NU39 408 aa22.46■■□□□ 1.19
MCF2L-221ENST00000469415 TTC21BQ7Z4L5 1316 aa22.45■■□□□ 1.18
MCF2L-221ENST00000469415 HDAC1Q13547 482 aaPredicted RBP22.45■■□□□ 1.18
MCF2L-221ENST00000469415 AAMPQ13685 434 aa22.45■■□□□ 1.18
MCF2L-221ENST00000469415 BRPF3Q9ULD4 1205 aa22.45■■□□□ 1.18
MCF2L-221ENST00000469415 AMOTL2Q9Y2J4 779 aa22.45■■□□□ 1.18
MCF2L-221ENST00000469415 FAM135BQ49AJ0 1406 aa22.44■■□□□ 1.18
MCF2L-221ENST00000469415 ADGRB2O60241 1585 aa22.44■■□□□ 1.18
MCF2L-221ENST00000469415 ZBTB7BO15156 539 aaPredicted RBP22.44■■□□□ 1.18
MCF2L-221ENST00000469415 EDC4Q6P2E9 1401 aaKnown RBP22.44■■□□□ 1.18
MCF2L-221ENST00000469415 ALDH1L2Q3SY69 923 aa22.44■■□□□ 1.18
MCF2L-221ENST00000469415 CHD1LQ86WJ1 897 aa22.44■■□□□ 1.18
MCF2L-221ENST00000469415 SMC5Q8IY18 1101 aa22.43■■□□□ 1.18
MCF2L-221ENST00000469415 SLC4A10Q6U841 1118 aa22.43■■□□□ 1.18
MCF2L-221ENST00000469415 CFAP44Q96MT7 982 aa22.43■■□□□ 1.18
MCF2L-221ENST00000469415 IFT57Q9NWB7 429 aa22.43■■□□□ 1.18
MCF2L-221ENST00000469415 CALD1Q05682 793 aaKnown RBP22.41■■□□□ 1.18
MCF2L-221ENST00000469415 ZNF692Q9BU19 519 aaPredicted RBP22.41■■□□□ 1.18
MCF2L-221ENST00000469415 EID1Q9Y6B2 187 aa22.41■■□□□ 1.18
MCF2L-221ENST00000469415 CPSF1Q10570 1443 aaKnown RBP22.4■■□□□ 1.18
MCF2L-221ENST00000469415 TMEM2Q9UHN6 1383 aa22.4■■□□□ 1.18
MCF2L-221ENST00000469415 SIRT2Q8IXJ6 389 aa22.4■■□□□ 1.18
MCF2L-221ENST00000469415 GZF1Q9H116 711 aaPredicted RBP22.4■■□□□ 1.18
MCF2L-221ENST00000469415 MAP2P11137 1827 aaKnown RBP22.4■■□□□ 1.18
MCF2L-221ENST00000469415 AMPHP49418 695 aa22.4■■□□□ 1.18
MCF2L-221ENST00000469415 NUCB1Q02818 461 aa22.39■■□□□ 1.17
MCF2L-221ENST00000469415 NCBP3Q53F19 620 aaKnown RBP22.39■■□□□ 1.17
MCF2L-221ENST00000469415 C16orf71Q8IYS4 520 aaPredicted RBP22.39■■□□□ 1.17
MCF2L-221ENST00000469415 ATP7BP35670 1465 aa22.38■■□□□ 1.17
MCF2L-221ENST00000469415 TRHP20396 242 aaPredicted RBP22.38■■□□□ 1.17
MCF2L-221ENST00000469415 MED14O60244 1454 aa22.38■■□□□ 1.17
MCF2L-221ENST00000469415 F6X3S4 739 aa22.37■■□□□ 1.17
MCF2L-221ENST00000469415 NLRP6P59044 892 aa22.37■■□□□ 1.17
MCF2L-221ENST00000469415 LMOD3Q0VAK6 560 aa22.37■■□□□ 1.17
MCF2L-221ENST00000469415 ZNF853P0CG23 659 aa22.36■■□□□ 1.17
MCF2L-221ENST00000469415 SMARCA5O60264 1052 aaPredicted RBP22.36■■□□□ 1.17
MCF2L-221ENST00000469415 SLC4A2P04920 1241 aa22.35■■□□□ 1.17
MCF2L-221ENST00000469415 MAP3K19Q56UN5 1328 aa22.35■■□□□ 1.17
MCF2L-221ENST00000469415 USHBP1Q8N6Y0 703 aa22.35■■□□□ 1.17
MCF2L-221ENST00000469415 SPATA31D1Q6ZQQ2 1576 aa22.34■■□□□ 1.17
MCF2L-221ENST00000469415 OTUD7AQ8TE49 926 aaPredicted RBP22.33■■□□□ 1.17
MCF2L-221ENST00000469415 RTF1Q92541 710 aaKnown RBP22.33■■□□□ 1.17
MCF2L-221ENST00000469415 RBM42Q9BTD8 480 aaKnown RBP22.33■■□□□ 1.17
MCF2L-221ENST00000469415 MTHFSDQ2M296 383 aaKnown RBP22.33■■□□□ 1.16
MCF2L-221ENST00000469415 G2E3Q7L622 706 aa22.32■■□□□ 1.16
MCF2L-221ENST00000469415 TSPYL4Q9UJ04 414 aa22.32■■□□□ 1.16
MCF2L-221ENST00000469415 API5Q9BZZ5 524 aaKnown RBP22.31■■□□□ 1.16
MCF2L-221ENST00000469415 AGLP35573 1532 aa22.3■■□□□ 1.16
MCF2L-221ENST00000469415 MEIS3Q99687 375 aa22.3■■□□□ 1.16
MCF2L-221ENST00000469415 HSP90AA1P07900 732 aaKnown RBP22.3■■□□□ 1.16
MCF2L-221ENST00000469415 HSCBQ8IWL3 235 aa22.29■■□□□ 1.16
MCF2L-221ENST00000469415 KIF20BQ96Q89 1820 aa22.29■■□□□ 1.16
MCF2L-221ENST00000469415 KCNA6P17658 529 aa22.28■■□□□ 1.16
MCF2L-221ENST00000469415 LMOD2Q6P5Q4 547 aa22.28■■□□□ 1.16
MCF2L-221ENST00000469415 ADAMTS13Q76LX8 1427 aa22.28■■□□□ 1.16
MCF2L-221ENST00000469415 EYA1Q99502 592 aa22.28■■□□□ 1.16
MCF2L-221ENST00000469415 XPCQ01831 940 aaPredicted RBP22.27■■□□□ 1.16
MCF2L-221ENST00000469415 ABTB2Q8N961 1025 aa22.27■■□□□ 1.16
MCF2L-221ENST00000469415 ZNF428Q96B54 188 aa22.27■■□□□ 1.16
MCF2L-221ENST00000469415 AATKQ6ZMQ8 1374 aa22.27■■□□□ 1.16
MCF2L-221ENST00000469415 DLC1Q96QB1 1528 aa22.27■■□□□ 1.16
MCF2L-221ENST00000469415 TBC1D9Q6ZT07 1266 aa22.27■■□□□ 1.16
MCF2L-221ENST00000469415 ANTXR1Q9H6X2 564 aa22.27■■□□□ 1.16
MCF2L-221ENST00000469415 CDK12Q9NYV4 1490 aaPredicted RBP22.26■■□□□ 1.15
MCF2L-221ENST00000469415 NRXN3Q9Y4C0 1643 aa22.26■■□□□ 1.15
MCF2L-221ENST00000469415 TSHZ3Q63HK5 1081 aa22.26■■□□□ 1.15
MCF2L-221ENST00000469415 ABCC4O15439 1325 aa22.26■■□□□ 1.15
MCF2L-221ENST00000469415 PTPRUQ92729 1446 aa22.25■■□□□ 1.15
MCF2L-221ENST00000469415 ARHGAP45Q92619 1136 aa22.25■■□□□ 1.15
MCF2L-221ENST00000469415 CHL1O00533 1208 aa22.25■■□□□ 1.15
MCF2L-221ENST00000469415 HSP90AB1P08238 724 aaKnown RBP22.25■■□□□ 1.15
MCF2L-221ENST00000469415 GCC1Q96CN9 775 aa22.25■■□□□ 1.15
MCF2L-221ENST00000469415 PLEKHG3A1L390 1219 aa22.24■■□□□ 1.15
MCF2L-221ENST00000469415 CD2BP2O95400 341 aaKnown RBP22.24■■□□□ 1.15
MCF2L-221ENST00000469415 ANKRD26Q9UPS8 1709 aa22.22■■□□□ 1.15
MCF2L-221ENST00000469415 USP6P35125 1406 aa22.22■■□□□ 1.15
MCF2L-221ENST00000469415 GSPT1P15170 499 aaKnown RBP22.21■■□□□ 1.15
MCF2L-221ENST00000469415 CDC42BPGQ6DT37 1551 aa22.21■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms