RNA–Protein interactions for RNA: ENST00000380393.7

PTPRA-204, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 1 (best) BASIC

Gene PTPRA, Length 3,636 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-204ENST00000380393 PIBF1Q8WXW3 757 aa11.4□□□□□ -0.58
PTPRA-204ENST00000380393 LRPPRCP42704 1394 aaKnown RBP11.4□□□□□ -0.58
PTPRA-204ENST00000380393 ZFYVE16Q7Z3T8 1539 aa11.4□□□□□ -0.58
PTPRA-204ENST00000380393 MAP3K4Q9Y6R4 1608 aa11.4□□□□□ -0.58
PTPRA-204ENST00000380393 PRIM1P49642 420 aaKnown RBP11.39□□□□□ -0.59
PTPRA-204ENST00000380393 RGL3Q3MIN7 710 aa11.39□□□□□ -0.59
PTPRA-204ENST00000380393 DNAJC21Q5F1R6 531 aaKnown RBP11.39□□□□□ -0.59
PTPRA-204ENST00000380393 ATP7AQ04656 1500 aa11.39□□□□□ -0.59
PTPRA-204ENST00000380393 ARAP3Q8WWN8 1544 aa11.39□□□□□ -0.59
PTPRA-204ENST00000380393 ZNF518AQ6AHZ1 1483 aa11.39□□□□□ -0.59
PTPRA-204ENST00000380393 GOLGA6L6A8MZA4 724 aa11.39□□□□□ -0.59
PTPRA-204ENST00000380393 RAB3GAP1Q15042 981 aa11.39□□□□□ -0.59
PTPRA-204ENST00000380393 ZSCAN23Q3MJ62 389 aa11.39□□□□□ -0.59
PTPRA-204ENST00000380393 C10orf67Q8IYJ2 551 aa11.39□□□□□ -0.59
PTPRA-204ENST00000380393 C17orf53Q8N3J3 647 aaPredicted RBP11.39□□□□□ -0.59
PTPRA-204ENST00000380393 MORC2Q9Y6X9 1032 aaPredicted RBP11.39□□□□□ -0.59
PTPRA-204ENST00000380393 KIF13AQ9H1H9 1805 aa11.38□□□□□ -0.59
PTPRA-204ENST00000380393 CIZ1Q9ULV3 898 aaPredicted RBP11.38□□□□□ -0.59
PTPRA-204ENST00000380393 NLRP13Q86W25 1043 aa11.38□□□□□ -0.59
PTPRA-204ENST00000380393 DRC1Q96MC2 740 aa11.38□□□□□ -0.59
PTPRA-204ENST00000380393 DONSONQ9NYP3 566 aa11.38□□□□□ -0.59
PTPRA-204ENST00000380393 KIF16BQ96L93 1317 aa11.38□□□□□ -0.59
PTPRA-204ENST00000380393 SGSM3Q96HU1 749 aa11.37□□□□□ -0.59
PTPRA-204ENST00000380393 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.37□□□□□ -0.59
PTPRA-204ENST00000380393 C22orf23Q9BZE7 217 aa11.37□□□□□ -0.59
PTPRA-204ENST00000380393 CASQ1P31415 396 aa11.37□□□□□ -0.59
PTPRA-204ENST00000380393 FKBP5Q13451 457 aaPredicted RBP11.37□□□□□ -0.59
PTPRA-204ENST00000380393 ANKRD30BQ9BXX2 1392 aa11.37□□□□□ -0.59
PTPRA-204ENST00000380393 ZNF526Q8TF50 670 aaPredicted RBP11.36□□□□□ -0.59
PTPRA-204ENST00000380393 PPRC1Q5VV67 1664 aaKnown RBP11.36□□□□□ -0.59
PTPRA-204ENST00000380393 KIDINS220Q9ULH0 1771 aa11.36□□□□□ -0.59
PTPRA-204ENST00000380393 TPRNQ4KMQ1 711 aa11.36□□□□□ -0.59
PTPRA-204ENST00000380393 CDCA8Q53HL2 280 aa11.36□□□□□ -0.59
PTPRA-204ENST00000380393 NEO1Q92859 1461 aa11.36□□□□□ -0.59
PTPRA-204ENST00000380393 GLI2P10070 1586 aa11.36□□□□□ -0.59
PTPRA-204ENST00000380393 NCBP1Q09161 790 aaKnown RBP11.35□□□□□ -0.59
PTPRA-204ENST00000380393 RAI14Q9P0K7 980 aa11.35□□□□□ -0.59
PTPRA-204ENST00000380393 ZBTB12Q9Y330 459 aaPredicted RBP11.35□□□□□ -0.59
PTPRA-204ENST00000380393 IGHDP01880 384 aa11.35□□□□□ -0.59
PTPRA-204ENST00000380393 DDIT3P35638 169 aa11.35□□□□□ -0.59
PTPRA-204ENST00000380393 RNF214Q8ND24 703 aa11.35□□□□□ -0.59
PTPRA-204ENST00000380393 SART3Q15020 963 aaKnown RBP11.35□□□□□ -0.59
PTPRA-204ENST00000380393 CREBRFQ8IUR6 639 aa11.35□□□□□ -0.59
PTPRA-204ENST00000380393 FOXD4L1Q9NU39 408 aa11.35□□□□□ -0.59
PTPRA-204ENST00000380393 BRD4O60885 1362 aaPredicted RBP11.35□□□□□ -0.59
PTPRA-204ENST00000380393 DUOX2Q9NRD8 1548 aa11.35□□□□□ -0.59
PTPRA-204ENST00000380393 SPATA31E1Q6ZUB1 1445 aa11.35□□□□□ -0.59
PTPRA-204ENST00000380393 CTIFO43310 598 aaKnown RBP11.34□□□□□ -0.59
PTPRA-204ENST00000380393 KIF18AQ8NI77 898 aa11.34□□□□□ -0.59
PTPRA-204ENST00000380393 SUFUQ9UMX1 484 aa11.34□□□□□ -0.59
PTPRA-204ENST00000380393 JRKLQ9Y4A0 524 aa11.34□□□□□ -0.59
PTPRA-204ENST00000380393 TRIM66O15016 1216 aa11.34□□□□□ -0.59
PTPRA-204ENST00000380393 FAM212AQ96EL1 285 aa11.34□□□□□ -0.59
PTPRA-204ENST00000380393 CXorf56Q9H5V9 222 aa11.34□□□□□ -0.59
PTPRA-204ENST00000380393 RTEL1-TNFRSF6BF6WH68 1400 aa11.34□□□□□ -0.59
PTPRA-204ENST00000380393 ZNF853P0CG23 659 aa11.34□□□□□ -0.59
PTPRA-204ENST00000380393 CYP2C19P33261 490 aa11.34□□□□□ -0.59
PTPRA-204ENST00000380393 MAST1Q9Y2H9 1570 aa11.34□□□□□ -0.59
PTPRA-204ENST00000380393 FAM135AQ9P2D6 1515 aa11.33□□□□□ -0.6
PTPRA-204ENST00000380393 A2MP01023 1474 aa11.33□□□□□ -0.6
PTPRA-204ENST00000380393 INO80Q9ULG1 1556 aaPredicted RBP11.33□□□□□ -0.6
PTPRA-204ENST00000380393 SSFA2P28290 1259 aa11.33□□□□□ -0.6
PTPRA-204ENST00000380393 GOLGA6L1Q8N7Z2 621 aa11.33□□□□□ -0.6
PTPRA-204ENST00000380393 CALR3Q96L12 384 aaKnown RBP11.33□□□□□ -0.6
PTPRA-204ENST00000380393 MYO1CO00159 1063 aa11.33□□□□□ -0.6
PTPRA-204ENST00000380393 KIF1CO43896 1103 aaKnown RBP11.33□□□□□ -0.6
PTPRA-204ENST00000380393 CFAP65Q6ZU64 1925 aaKnown RBP11.32□□□□□ -0.6
PTPRA-204ENST00000380393 SMC5Q8IY18 1101 aa11.32□□□□□ -0.6
PTPRA-204ENST00000380393 NOL10Q9BSC4 688 aaKnown RBP11.32□□□□□ -0.6
PTPRA-204ENST00000380393 TTC12Q9H892 705 aaPredicted RBP11.32□□□□□ -0.6
PTPRA-204ENST00000380393 SYT10Q6XYQ8 523 aa11.32□□□□□ -0.6
PTPRA-204ENST00000380393 DEF6Q9H4E7 631 aa11.32□□□□□ -0.6
PTPRA-204ENST00000380393 PLXNC1O60486 1568 aa11.32□□□□□ -0.6
PTPRA-204ENST00000380393 NCOA3Q9Y6Q9 1424 aa11.32□□□□□ -0.6
PTPRA-204ENST00000380393 WDR43Q15061 677 aaKnown RBP eCLIP11.32□□□□□ -0.6
PTPRA-204ENST00000380393 FRMPD1Q5SYB0 1578 aa11.31□□□□□ -0.6
PTPRA-204ENST00000380393 ABCA6Q8N139 1617 aa11.31□□□□□ -0.6
PTPRA-204ENST00000380393 BAG4O95429 457 aaKnown RBP11.31□□□□□ -0.6
PTPRA-204ENST00000380393 MNS1Q8NEH6 495 aa11.31□□□□□ -0.6
PTPRA-204ENST00000380393 PSMD1Q99460 953 aa11.31□□□□□ -0.6
PTPRA-204ENST00000380393 ST7Q9NRC1 585 aa11.31□□□□□ -0.6
PTPRA-204ENST00000380393 POLKQ9UBT6 870 aa11.31□□□□□ -0.6
PTPRA-204ENST00000380393 ERBINQ96RT1 1412 aa11.31□□□□□ -0.6
PTPRA-204ENST00000380393 NBPF11Q86T75 865 aa11.31□□□□□ -0.6
PTPRA-204ENST00000380393 SPTLC3Q9NUV7 552 aa11.31□□□□□ -0.6
PTPRA-204ENST00000380393 SSR1P43307 286 aaKnown RBP11.3□□□□□ -0.6
PTPRA-204ENST00000380393 LRCH2Q5VUJ6 765 aa11.3□□□□□ -0.6
PTPRA-204ENST00000380393 MCTP1Q6DN14 999 aa11.3□□□□□ -0.6
PTPRA-204ENST00000380393 RPRD2Q5VT52 1461 aaKnown RBP11.3□□□□□ -0.6
PTPRA-204ENST00000380393 MLH3Q9UHC1 1453 aa11.3□□□□□ -0.6
PTPRA-204ENST00000380393 REC8O95072 547 aa11.3□□□□□ -0.6
PTPRA-204ENST00000380393 CHGAP10645 457 aaKnown RBP11.3□□□□□ -0.6
PTPRA-204ENST00000380393 KDM5CP41229 1560 aa11.3□□□□□ -0.6
PTPRA-204ENST00000380393 ADAMTS8Q9UP79 889 aa11.3□□□□□ -0.6
PTPRA-204ENST00000380393 RICTORQ6R327 1708 aa11.3□□□□□ -0.6
PTPRA-204ENST00000380393 ROCK2O75116 1388 aaKnown RBP11.3□□□□□ -0.6
PTPRA-204ENST00000380393 NBPF9Q3BBW0 867 aa11.3□□□□□ -0.6
PTPRA-204ENST00000380393 CCDC91Q7Z6B0 441 aa11.3□□□□□ -0.6
PTPRA-204ENST00000380393 CCDC146Q8IYE0 955 aa11.3□□□□□ -0.6
PTPRA-204ENST00000380393 HECW2Q9P2P5 1572 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms