RNA–Protein interactions for RNA: ENST00000373222.3

CHD6-202, Transcript of chromodomain helicase DNA binding protein 6, humanhuman

TSL 1 (best) BASIC

Gene CHD6, Length 2,477 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD6-202ENST00000373222 LMTK2Q8IWU2 1503 aa8.3□□□□□ -1.08
CHD6-202ENST00000373222 GLI2P10070 1586 aa8.3□□□□□ -1.08
CHD6-202ENST00000373222 NPC1L1Q9UHC9 1359 aa8.3□□□□□ -1.08
CHD6-202ENST00000373222 ARHGEF28Q8N1W1 1705 aaKnown RBP8.3□□□□□ -1.08
CHD6-202ENST00000373222 IDI1Q13907 227 aa8.3□□□□□ -1.08
CHD6-202ENST00000373222 PANK1Q8TE04 598 aa8.3□□□□□ -1.08
CHD6-202ENST00000373222 STAC3Q96MF2 364 aa8.3□□□□□ -1.08
CHD6-202ENST00000373222 NEURL4Q96JN8 1562 aa8.3□□□□□ -1.08
CHD6-202ENST00000373222 TULP4Q9NRJ4 1543 aa8.3□□□□□ -1.08
CHD6-202ENST00000373222 MTHFSP49914 203 aa8.29□□□□□ -1.08
CHD6-202ENST00000373222 WWC1Q8IX03 1113 aa8.29□□□□□ -1.08
CHD6-202ENST00000373222 KDM4CQ9H3R0 1056 aa8.29□□□□□ -1.08
CHD6-202ENST00000373222 BRD2P25440 801 aaKnown RBP8.29□□□□□ -1.08
CHD6-202ENST00000373222 DEKP35659 375 aaKnown RBP8.29□□□□□ -1.08
CHD6-202ENST00000373222 FBXO31Q5XUX0 539 aaPredicted RBP8.29□□□□□ -1.08
CHD6-202ENST00000373222 NKTRP30414 1462 aaKnown RBP8.29□□□□□ -1.08
CHD6-202ENST00000373222 MLH3Q9UHC1 1453 aa8.29□□□□□ -1.08
CHD6-202ENST00000373222 IGHDP01880 384 aa8.28□□□□□ -1.08
CHD6-202ENST00000373222 FBLN1P23142 703 aa8.28□□□□□ -1.08
CHD6-202ENST00000373222 CADPS2Q86UW7 1296 aa8.28□□□□□ -1.08
CHD6-202ENST00000373222 DIP2CQ9Y2E4 1556 aa8.28□□□□□ -1.08
CHD6-202ENST00000373222 SETBP1Q9Y6X0 1596 aa8.28□□□□□ -1.08
CHD6-202ENST00000373222 E9PSI1 815 aa8.28□□□□□ -1.08
CHD6-202ENST00000373222 TCP11L2Q8N4U5 519 aa8.28□□□□□ -1.08
CHD6-202ENST00000373222 FRAT1Q92837 279 aaPredicted RBP8.28□□□□□ -1.08
CHD6-202ENST00000373222 USP35Q9P2H5 1018 aa8.28□□□□□ -1.08
CHD6-202ENST00000373222 COG6Q9Y2V7 657 aa8.28□□□□□ -1.08
CHD6-202ENST00000373222 NEXMIFQ5QGS0 1516 aa8.28□□□□□ -1.08
CHD6-202ENST00000373222 SBNO2Q9Y2G9 1366 aa8.27□□□□□ -1.08
CHD6-202ENST00000373222 SEMA3EO15041 775 aa8.27□□□□□ -1.09
CHD6-202ENST00000373222 MINK1Q8N4C8 1332 aaPredicted RBP8.27□□□□□ -1.09
CHD6-202ENST00000373222 PTGER2P43116 358 aa8.27□□□□□ -1.09
CHD6-202ENST00000373222 GGNBP2Q9H3C7 697 aa8.27□□□□□ -1.09
CHD6-202ENST00000373222 TSPOAP1O95153 1857 aa8.27□□□□□ -1.09
CHD6-202ENST00000373222 RICTORQ6R327 1708 aa8.27□□□□□ -1.09
CHD6-202ENST00000373222 PIK3C2BO00750 1634 aa8.27□□□□□ -1.09
CHD6-202ENST00000373222 POLR3AO14802 1390 aaPredicted RBP8.26□□□□□ -1.09
CHD6-202ENST00000373222 RLBP1P12271 317 aa8.26□□□□□ -1.09
CHD6-202ENST00000373222 CLUAP1Q96AJ1 413 aa8.26□□□□□ -1.09
CHD6-202ENST00000373222 PCDHB13Q9Y5F0 798 aa8.26□□□□□ -1.09
CHD6-202ENST00000373222 TRAK2O60296 914 aa8.26□□□□□ -1.09
CHD6-202ENST00000373222 C8orf34Q49A92 452 aa8.26□□□□□ -1.09
CHD6-202ENST00000373222 CYB5RLQ6IPT4 315 aa8.26□□□□□ -1.09
CHD6-202ENST00000373222 UBE2Q2Q8WVN8 375 aa8.26□□□□□ -1.09
CHD6-202ENST00000373222 MS4A1P11836 297 aa8.25□□□□□ -1.09
CHD6-202ENST00000373222 TMEM106CQ9BVX2 250 aa8.25□□□□□ -1.09
CHD6-202ENST00000373222 CFAP74Q9C0B2 1584 aa8.25□□□□□ -1.09
CHD6-202ENST00000373222 TESPA1A2RU30 521 aaPredicted RBP8.25□□□□□ -1.09
CHD6-202ENST00000373222 SRPK2P78362 688 aaKnown RBP8.25□□□□□ -1.09
CHD6-202ENST00000373222 BARGINQ6ZT62 677 aa8.25□□□□□ -1.09
CHD6-202ENST00000373222 CENPQQ7L2Z9 268 aaPredicted RBP8.25□□□□□ -1.09
CHD6-202ENST00000373222 TSR2Q969E8 191 aaKnown RBP8.25□□□□□ -1.09
CHD6-202ENST00000373222 A0A1W2PP64 1363 aa8.24□□□□□ -1.09
CHD6-202ENST00000373222 IQSEC2Q5JU85 1478 aa8.24□□□□□ -1.09
CHD6-202ENST00000373222 U2AF1L5P0DN76 240 aaPredicted RBP8.24□□□□□ -1.09
CHD6-202ENST00000373222 U2AF1Q01081 240 aaKnown RBP eCLIP8.24□□□□□ -1.09
CHD6-202ENST00000373222 FAM177A1Q8N128 213 aaPredicted RBP8.24□□□□□ -1.09
CHD6-202ENST00000373222 CANXP27824 592 aaKnown RBP8.24□□□□□ -1.09
CHD6-202ENST00000373222 PRAM1Q96QH2 718 aa8.24□□□□□ -1.09
CHD6-202ENST00000373222 CGNL1Q0VF96 1302 aa8.23□□□□□ -1.09
CHD6-202ENST00000373222 STK25O00506 426 aa8.23□□□□□ -1.09
CHD6-202ENST00000373222 RUNDC1Q96C34 613 aa8.23□□□□□ -1.09
CHD6-202ENST00000373222 PREX1Q8TCU6 1659 aa8.23□□□□□ -1.09
CHD6-202ENST00000373222 EVC2Q86UK5 1308 aa8.23□□□□□ -1.09
CHD6-202ENST00000373222 U2SURPO15042 1029 aaKnown RBP8.23□□□□□ -1.09
CHD6-202ENST00000373222 VGFO15240 615 aaPredicted RBP8.23□□□□□ -1.09
CHD6-202ENST00000373222 MLECQ14165 292 aa8.23□□□□□ -1.09
CHD6-202ENST00000373222 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.23□□□□□ -1.09
CHD6-202ENST00000373222 ONECUT3O60422 494 aaPredicted RBP8.22□□□□□ -1.09
CHD6-202ENST00000373222 RARSP54136 660 aaKnown RBP8.22□□□□□ -1.09
CHD6-202ENST00000373222 IRF5Q13568 498 aa8.22□□□□□ -1.09
CHD6-202ENST00000373222 TMEM131LA2VDJ0 1609 aa8.22□□□□□ -1.09
CHD6-202ENST00000373222 PCDHB15Q9Y5E8 787 aa8.22□□□□□ -1.09
CHD6-202ENST00000373222 ANKRD36BQ8N2N9 1353 aa8.22□□□□□ -1.09
CHD6-202ENST00000373222 FLIIQ13045 1269 aa8.21□□□□□ -1.09
CHD6-202ENST00000373222 WAPLQ7Z5K2 1190 aa8.21□□□□□ -1.09
CHD6-202ENST00000373222 PTPRMP28827 1452 aa8.21□□□□□ -1.09
CHD6-202ENST00000373222 RPGRIP1LQ68CZ1 1315 aa8.21□□□□□ -1.1
CHD6-202ENST00000373222 CD163L1Q9NR16 1453 aa8.21□□□□□ -1.1
CHD6-202ENST00000373222 NEFMP07197 916 aa8.21□□□□□ -1.1
CHD6-202ENST00000373222 RETREG2Q8NC44 543 aa8.21□□□□□ -1.1
CHD6-202ENST00000373222 AK7Q96M32 723 aa8.21□□□□□ -1.1
CHD6-202ENST00000373222 USP32Q8NFA0 1604 aa8.21□□□□□ -1.1
CHD6-202ENST00000373222 NCKAP5LQ9HCH0 1330 aa8.2□□□□□ -1.1
CHD6-202ENST00000373222 NEO1Q92859 1461 aa8.2□□□□□ -1.1
CHD6-202ENST00000373222 A6NJR5 290 aa8.2□□□□□ -1.1
CHD6-202ENST00000373222 FYB1O15117 783 aa8.2□□□□□ -1.1
CHD6-202ENST00000373222 FAM161AQ3B820 660 aa8.2□□□□□ -1.1
CHD6-202ENST00000373222 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.2□□□□□ -1.14e-7■■□□□ 14.3
CHD6-202ENST00000373222 PPM1GO15355 546 aaPredicted RBP8.2□□□□□ -1.1
CHD6-202ENST00000373222 POGKQ9P215 609 aa8.2□□□□□ -1.1
CHD6-202ENST00000373222 VIRMAQ69YN4 1812 aaKnown RBP8.19□□□□□ -1.1
CHD6-202ENST00000373222 FAM69CQ0P6D2 419 aa8.19□□□□□ -1.1
CHD6-202ENST00000373222 C3orf67Q6ZVT6 689 aa8.19□□□□□ -1.1
CHD6-202ENST00000373222 RASEFQ8IZ41 740 aa8.19□□□□□ -1.1
CHD6-202ENST00000373222 CABP1Q9NZU7 370 aa8.19□□□□□ -1.1
CHD6-202ENST00000373222 RTL5Q5HYW3 569 aaPredicted RBP8.19□□□□□ -1.1
CHD6-202ENST00000373222 L3MBTL3Q96JM7 780 aaPredicted RBP8.19□□□□□ -1.1
CHD6-202ENST00000373222 ABCC11Q96J66 1382 aa8.18□□□□□ -1.1
CHD6-202ENST00000373222 YTHDC2Q9H6S0 1430 aaKnown RBP8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms