RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 PHOX2BQ99453 314 aa10.96□□□□□ -0.65
VPS13A-201ENST00000355766 FAM135AQ9P2D6 1515 aa10.95□□□□□ -0.66
VPS13A-201ENST00000355766 GPATCH8Q9UKJ3 1502 aaKnown RBP10.95□□□□□ -0.66
VPS13A-201ENST00000355766 MED14O60244 1454 aa10.95□□□□□ -0.66
VPS13A-201ENST00000355766 TNRQ92752 1358 aa10.95□□□□□ -0.66
VPS13A-201ENST00000355766 PUS10Q3MIT2 529 aaKnown RBP10.95□□□□□ -0.66
VPS13A-201ENST00000355766 GGT6Q6P531 493 aa10.95□□□□□ -0.66
VPS13A-201ENST00000355766 ADGBQ8N7X0 1667 aa10.95□□□□□ -0.66
VPS13A-201ENST00000355766 DEPDC5O75140 1603 aa10.95□□□□□ -0.66
VPS13A-201ENST00000355766 PZPP20742 1482 aa10.94□□□□□ -0.66
VPS13A-201ENST00000355766 S1PR4O95977 384 aa10.94□□□□□ -0.66
VPS13A-201ENST00000355766 EMID1Q96A84 441 aaPredicted RBP10.94□□□□□ -0.66
VPS13A-201ENST00000355766 ZNF777Q9ULD5 760 aaPredicted RBP10.94□□□□□ -0.66
VPS13A-201ENST00000355766 KDM5DQ9BY66 1539 aa10.94□□□□□ -0.66
VPS13A-201ENST00000355766 NPHP4O75161 1426 aaPredicted RBP10.93□□□□□ -0.66
VPS13A-201ENST00000355766 NRG2O14511 850 aaPredicted RBP10.93□□□□□ -0.66
VPS13A-201ENST00000355766 LCE2BO14633 110 aa10.93□□□□□ -0.66
VPS13A-201ENST00000355766 PPEF1O14829 653 aaPredicted RBP10.93□□□□□ -0.66
VPS13A-201ENST00000355766 ADH1BP00325 375 aa10.93□□□□□ -0.66
VPS13A-201ENST00000355766 UBTFP17480 764 aaKnown RBP10.93□□□□□ -0.66
VPS13A-201ENST00000355766 HNRNPMP52272 730 aaKnown RBP eCLIP10.93□□□□□ -0.66
VPS13A-201ENST00000355766 SCUBE3Q8IX30 993 aa10.93□□□□□ -0.66
VPS13A-201ENST00000355766 RDH13Q8NBN7 331 aa10.93□□□□□ -0.66
VPS13A-201ENST00000355766 FYCO1Q9BQS8 1478 aa10.93□□□□□ -0.66
VPS13A-201ENST00000355766 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.92□□□□□ -0.66
VPS13A-201ENST00000355766 DDX11L8A8MPP1 907 aa10.92□□□□□ -0.66
VPS13A-201ENST00000355766 LRRC7Q96NW7 1537 aa10.92□□□□□ -0.66
VPS13A-201ENST00000355766 NLRP1Q9C000 1473 aa10.92□□□□□ -0.66
VPS13A-201ENST00000355766 UGGT1Q9NYU2 1555 aa10.91□□□□□ -0.66
VPS13A-201ENST00000355766 LOC105371045A0A1W2PR82 267 aa10.91□□□□□ -0.66
VPS13A-201ENST00000355766 SLC19A1P41440 591 aa10.91□□□□□ -0.66
VPS13A-201ENST00000355766 RGS17Q9UGC6 210 aaPredicted RBP10.91□□□□□ -0.66
VPS13A-201ENST00000355766 PDZRN3Q9UPQ7 1066 aa10.91□□□□□ -0.66
VPS13A-201ENST00000355766 IQGAP1P46940 1657 aa10.91□□□□□ -0.66
VPS13A-201ENST00000355766 ANKLE2Q86XL3 938 aa10.9□□□□□ -0.66
VPS13A-201ENST00000355766 ANKLE1Q8NAG6 615 aa10.9□□□□□ -0.66
VPS13A-201ENST00000355766 TRAF7Q6Q0C0 670 aa10.89□□□□□ -0.67
VPS13A-201ENST00000355766 STRCP1A6NGW2 1772 aa10.88□□□□□ -0.67
VPS13A-201ENST00000355766 RTEL1-TNFRSF6BF6WH68 1400 aa10.88□□□□□ -0.67
VPS13A-201ENST00000355766 FUT2Q10981 343 aa10.88□□□□□ -0.67
VPS13A-201ENST00000355766 FBXO31Q5XUX0 539 aaPredicted RBP10.88□□□□□ -0.67
VPS13A-201ENST00000355766 SLC6A16Q9GZN6 736 aa10.88□□□□□ -0.67
VPS13A-201ENST00000355766 DHX29Q7Z478 1369 aaKnown RBP10.88□□□□□ -0.67
VPS13A-201ENST00000355766 CCNB3Q8WWL7 1395 aa10.88□□□□□ -0.67
VPS13A-201ENST00000355766 CEP162Q5TB80 1403 aa10.87□□□□□ -0.67
VPS13A-201ENST00000355766 MIA2Q96PC5 1412 aa10.87□□□□□ -0.67
VPS13A-201ENST00000355766 GCGRP47871 477 aa10.87□□□□□ -0.67
VPS13A-201ENST00000355766 MORN1Q5T089 497 aa10.87□□□□□ -0.67
VPS13A-201ENST00000355766 LIAT1Q6ZQX7 453 aa10.87□□□□□ -0.67
VPS13A-201ENST00000355766 CFDP1Q9UEE9 299 aaPredicted RBP10.87□□□□□ -0.67
VPS13A-201ENST00000355766 MBD5Q9P267 1494 aa10.87□□□□□ -0.67
VPS13A-201ENST00000355766 TRIM67Q6ZTA4 783 aa10.86□□□□□ -0.67
VPS13A-201ENST00000355766 SULF1Q8IWU6 871 aa10.86□□□□□ -0.67
VPS13A-201ENST00000355766 THEMISQ8N1K5 641 aaPredicted RBP10.86□□□□□ -0.67
VPS13A-201ENST00000355766 SPSB2Q99619 263 aa10.86□□□□□ -0.67
VPS13A-201ENST00000355766 TIAM1Q13009 1591 aa10.86□□□□□ -0.67
VPS13A-201ENST00000355766 ATP6V1AP38606 617 aa10.85□□□□□ -0.67
VPS13A-201ENST00000355766 SPRYD7Q5W111 196 aa10.85□□□□□ -0.67
VPS13A-201ENST00000355766 ZC3H13Q5T200 1668 aaKnown RBP10.85□□□□□ -0.67
VPS13A-201ENST00000355766 TULP1O00294 542 aaPredicted RBP10.84□□□□□ -0.67
VPS13A-201ENST00000355766 MAP2K5Q13163 448 aa10.84□□□□□ -0.67
VPS13A-201ENST00000355766 PLA2G2CQ5R387 149 aa10.83□□□□□ -0.68
VPS13A-201ENST00000355766 ZNF598Q86UK7 904 aaKnown RBP10.83□□□□□ -0.68
VPS13A-201ENST00000355766 THAP11Q96EK4 314 aa10.83□□□□□ -0.68
VPS13A-201ENST00000355766 SLC27A5Q9Y2P5 690 aa10.83□□□□□ -0.68
VPS13A-201ENST00000355766 CCDC141Q6ZP82 1450 aa10.82□□□□□ -0.68
VPS13A-201ENST00000355766 IRF6O14896 467 aa10.82□□□□□ -0.68
VPS13A-201ENST00000355766 KIF3BO15066 747 aa10.82□□□□□ -0.68
VPS13A-201ENST00000355766 POTEAQ6S8J7 498 aa10.82□□□□□ -0.68
VPS13A-201ENST00000355766 WASHC2CQ9Y4E1 1318 aa10.82□□□□□ -0.68
VPS13A-201ENST00000355766 FAM135BQ49AJ0 1406 aa10.81□□□□□ -0.68
VPS13A-201ENST00000355766 ZNF644Q9H582 1327 aaPredicted RBP10.81□□□□□ -0.68
VPS13A-201ENST00000355766 SETD1AO15047 1707 aaKnown RBP10.81□□□□□ -0.68
VPS13A-201ENST00000355766 ERVK-7P63135 1459 aa10.81□□□□□ -0.68
VPS13A-201ENST00000355766 SCAF11Q99590 1463 aaKnown RBP10.81□□□□□ -0.68
VPS13A-201ENST00000355766 MTUS2Q5JR59 1369 aa10.8□□□□□ -0.68
VPS13A-201ENST00000355766 EHBP1L1Q8N3D4 1523 aa10.8□□□□□ -0.68
VPS13A-201ENST00000355766 ABCC3O15438 1527 aa10.79□□□□□ -0.68
VPS13A-201ENST00000355766 FMNL1O95466 1100 aaPredicted RBP10.79□□□□□ -0.68
VPS13A-201ENST00000355766 ZNF697Q5TEC3 545 aa10.79□□□□□ -0.68
VPS13A-201ENST00000355766 FAM160A2Q8N612 972 aaPredicted RBP10.79□□□□□ -0.68
VPS13A-201ENST00000355766 ARHGAP23Q9P227 1491 aa10.78□□□□□ -0.68
VPS13A-201ENST00000355766 MINK1Q8N4C8 1332 aaPredicted RBP10.78□□□□□ -0.68
VPS13A-201ENST00000355766 UBR1Q8IWV7 1749 aa10.78□□□□□ -0.68
VPS13A-201ENST00000355766 XIRP1Q702N8 1843 aaKnown RBP10.77□□□□□ -0.68
VPS13A-201ENST00000355766 CAMSAP2Q08AD1 1489 aa10.77□□□□□ -0.69
VPS13A-201ENST00000355766 NCOA2Q15596 1464 aa10.77□□□□□ -0.69
VPS13A-201ENST00000355766 CD46P15529 392 aa10.77□□□□□ -0.69
VPS13A-201ENST00000355766 BRICD5Q6PL45 260 aa10.77□□□□□ -0.69
VPS13A-201ENST00000355766 SLIT1O75093 1534 aa10.77□□□□□ -0.69
VPS13A-201ENST00000355766 LRRC9Q6ZRR7 1453 aa10.76□□□□□ -0.69
VPS13A-201ENST00000355766 MAP3K1Q13233 1512 aa10.76□□□□□ -0.69
VPS13A-201ENST00000355766 PRR20EP86478 221 aa10.76□□□□□ -0.69
VPS13A-201ENST00000355766 PRR20CP86479 221 aa10.76□□□□□ -0.69
VPS13A-201ENST00000355766 PRR20DP86480 221 aa10.76□□□□□ -0.69
VPS13A-201ENST00000355766 PRR20BP86481 221 aa10.76□□□□□ -0.69
VPS13A-201ENST00000355766 PRR20AP86496 221 aa10.76□□□□□ -0.69
VPS13A-201ENST00000355766 MDM2Q00987 491 aaPredicted RBP10.76□□□□□ -0.69
VPS13A-201ENST00000355766 SALL2Q9Y467 1007 aaPredicted RBP10.76□□□□□ -0.69
VPS13A-201ENST00000355766 ROBO1Q9Y6N7 1651 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms