RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 ATF7IPQ6VMQ6 1270 aa17.66■□□□□ 0.42
TRIM4-201ENST00000349062 SHPRHQ149N8 1683 aa17.66■□□□□ 0.42
TRIM4-201ENST00000349062 C8orf58Q8NAV2 365 aa17.66■□□□□ 0.42
TRIM4-201ENST00000349062 ESCO1Q5FWF5 840 aa17.65■□□□□ 0.42
TRIM4-201ENST00000349062 SPRYD3Q8NCJ5 442 aa17.65■□□□□ 0.42
TRIM4-201ENST00000349062 CPS1P31327 1500 aa17.65■□□□□ 0.42
TRIM4-201ENST00000349062 RWDD1Q9H446 243 aaPredicted RBP17.65■□□□□ 0.42
TRIM4-201ENST00000349062 SEC24BO95487 1268 aa17.64■□□□□ 0.41
TRIM4-201ENST00000349062 TWISTNBQ3B726 338 aaPredicted RBP17.64■□□□□ 0.41
TRIM4-201ENST00000349062 BRPF3Q9ULD4 1205 aa17.64■□□□□ 0.41
TRIM4-201ENST00000349062 EDC4Q6P2E9 1401 aaKnown RBP17.63■□□□□ 0.41
TRIM4-201ENST00000349062 LNPKQ9C0E8 428 aa17.63■□□□□ 0.41
TRIM4-201ENST00000349062 ADAMTS13Q76LX8 1427 aa17.62■□□□□ 0.41
TRIM4-201ENST00000349062 C8orf34Q49A92 452 aa17.62■□□□□ 0.41
TRIM4-201ENST00000349062 NLRP1Q9C000 1473 aa17.62■□□□□ 0.41
TRIM4-201ENST00000349062 MAP3K19Q56UN5 1328 aa17.62■□□□□ 0.41
TRIM4-201ENST00000349062 SLC4A10Q6U841 1118 aa17.62■□□□□ 0.41
TRIM4-201ENST00000349062 ZNF428Q96B54 188 aa17.62■□□□□ 0.41
TRIM4-201ENST00000349062 IPO8O15397 1037 aaKnown RBP17.61■□□□□ 0.41
TRIM4-201ENST00000349062 IQSEC2Q5JU85 1478 aa17.61■□□□□ 0.41
TRIM4-201ENST00000349062 PTPRUQ92729 1446 aa17.61■□□□□ 0.41
TRIM4-201ENST00000349062 RTF1Q92541 710 aaKnown RBP17.61■□□□□ 0.41
TRIM4-201ENST00000349062 GNAI1P63096 354 aa17.6■□□□□ 0.41
TRIM4-201ENST00000349062 PSME1Q06323 249 aa17.6■□□□□ 0.41
TRIM4-201ENST00000349062 ANKLE2Q86XL3 938 aa17.59■□□□□ 0.41
TRIM4-201ENST00000349062 MAP2P11137 1827 aaKnown RBP17.59■□□□□ 0.41
TRIM4-201ENST00000349062 DDX19BQ9UMR2 479 aa17.58■□□□□ 0.41
TRIM4-201ENST00000349062 SETD1BQ9UPS6 1966 aaKnown RBP17.58■□□□□ 0.41
TRIM4-201ENST00000349062 VAMP4O75379 141 aa17.58■□□□□ 0.4
TRIM4-201ENST00000349062 MFAP1P55081 439 aaKnown RBP17.57■□□□□ 0.4
TRIM4-201ENST00000349062 TBX22Q9Y458 520 aa17.57■□□□□ 0.4
TRIM4-201ENST00000349062 CPSF1Q10570 1443 aaKnown RBP17.57■□□□□ 0.4
TRIM4-201ENST00000349062 LRRC7Q96NW7 1537 aa17.57■□□□□ 0.4
TRIM4-201ENST00000349062 ANKRD45Q5TZF3 282 aa17.57■□□□□ 0.4
TRIM4-201ENST00000349062 ARXQ96QS3 562 aa17.57■□□□□ 0.4
TRIM4-201ENST00000349062 ATP7BP35670 1465 aa17.57■□□□□ 0.4
TRIM4-201ENST00000349062 PLEKHG1Q9ULL1 1385 aa17.56■□□□□ 0.4
TRIM4-201ENST00000349062 COL3A1P02461 1466 aaPredicted RBP17.56■□□□□ 0.4
TRIM4-201ENST00000349062 PNPLA6Q8IY17 1366 aa17.56■□□□□ 0.4
TRIM4-201ENST00000349062 SLKQ9H2G2 1235 aaPredicted RBP17.56■□□□□ 0.4
TRIM4-201ENST00000349062 TSPYL4Q9UJ04 414 aa17.55■□□□□ 0.4
TRIM4-201ENST00000349062 CALD1Q05682 793 aaKnown RBP17.55■□□□□ 0.4
TRIM4-201ENST00000349062 MTHFSDQ2M296 383 aaKnown RBP17.55■□□□□ 0.4
TRIM4-201ENST00000349062 EYA1Q99502 592 aa17.55■□□□□ 0.4
TRIM4-201ENST00000349062 KIF16BQ96L93 1317 aa17.55■□□□□ 0.4
TRIM4-201ENST00000349062 ORAI2Q96SN7 254 aa17.54■□□□□ 0.4
TRIM4-201ENST00000349062 LMOD3Q0VAK6 560 aa17.54■□□□□ 0.4
TRIM4-201ENST00000349062 DDX17Q92841 729 aaKnown RBP17.54■□□□□ 0.4
TRIM4-201ENST00000349062 NRXN3Q9Y4C0 1643 aa17.54■□□□□ 0.4
TRIM4-201ENST00000349062 PLEKHG3A1L390 1219 aa17.53■□□□□ 0.4
TRIM4-201ENST00000349062 F6X3S4 739 aa17.53■□□□□ 0.4
TRIM4-201ENST00000349062 CFAP44Q96MT7 982 aa17.53■□□□□ 0.4
TRIM4-201ENST00000349062 PHF8Q9UPP1 1060 aa17.53■□□□□ 0.4
TRIM4-201ENST00000349062 IFT57Q9NWB7 429 aa17.52■□□□□ 0.4
TRIM4-201ENST00000349062 FAM135BQ49AJ0 1406 aa17.52■□□□□ 0.4
TRIM4-201ENST00000349062 SLC4A2P04920 1241 aa17.51■□□□□ 0.39
TRIM4-201ENST00000349062 REREQ9P2R6 1566 aa17.51■□□□□ 0.39
TRIM4-201ENST00000349062 MRPL50Q8N5N7 158 aaKnown RBP17.51■□□□□ 0.39
TRIM4-201ENST00000349062 UPF2Q9HAU5 1272 aaKnown RBP17.51■□□□□ 0.39
TRIM4-201ENST00000349062 LRRC59Q96AG4 307 aaKnown RBP17.51■□□□□ 0.39
TRIM4-201ENST00000349062 USP6P35125 1406 aa17.51■□□□□ 0.39
TRIM4-201ENST00000349062 EIF2S2P20042 333 aaKnown RBP17.5■□□□□ 0.39
TRIM4-201ENST00000349062 NFKBIBQ15653 356 aa17.5■□□□□ 0.39
TRIM4-201ENST00000349062 PROSER2Q86WR7 435 aaPredicted RBP17.5■□□□□ 0.39
TRIM4-201ENST00000349062 DDRGK1Q96HY6 314 aa17.5■□□□□ 0.39
TRIM4-201ENST00000349062 USP32Q8NFA0 1604 aa17.5■□□□□ 0.39
TRIM4-201ENST00000349062 IL16Q14005 1332 aa17.5■□□□□ 0.39
TRIM4-201ENST00000349062 GSE1Q14687 1217 aa17.49■□□□□ 0.39
TRIM4-201ENST00000349062 SIRT1Q96EB6 747 aa17.49■□□□□ 0.39
TRIM4-201ENST00000349062 DLC1Q96QB1 1528 aa17.49■□□□□ 0.39
TRIM4-201ENST00000349062 ZC3H6P61129 1189 aaKnown RBP17.49■□□□□ 0.39
TRIM4-201ENST00000349062 HSPA2P54652 639 aa17.48■□□□□ 0.39
TRIM4-201ENST00000349062 UBR1Q8IWV7 1749 aa17.48■□□□□ 0.39
TRIM4-201ENST00000349062 ZBTB40Q9NUA8 1239 aa17.48■□□□□ 0.39
TRIM4-201ENST00000349062 CT47B1P0C2W7 299 aaPredicted RBP17.47■□□□□ 0.39
TRIM4-201ENST00000349062 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.47■□□□□ 0.39
TRIM4-201ENST00000349062 G2E3Q7L622 706 aa17.46■□□□□ 0.39
TRIM4-201ENST00000349062 USP35Q9P2H5 1018 aa17.46■□□□□ 0.39
TRIM4-201ENST00000349062 KIF20BQ96Q89 1820 aa17.46■□□□□ 0.39
TRIM4-201ENST00000349062 MED14O60244 1454 aa17.45■□□□□ 0.38
TRIM4-201ENST00000349062 ALDH1L2Q3SY69 923 aa17.45■□□□□ 0.38
TRIM4-201ENST00000349062 CDC42BPGQ6DT37 1551 aa17.45■□□□□ 0.38
TRIM4-201ENST00000349062 HOXC9P31274 260 aa17.45■□□□□ 0.38
TRIM4-201ENST00000349062 ANXA1P04083 346 aa17.44■□□□□ 0.38
TRIM4-201ENST00000349062 AATKQ6ZMQ8 1374 aa17.44■□□□□ 0.38
TRIM4-201ENST00000349062 SMARCA5O60264 1052 aaPredicted RBP17.43■□□□□ 0.38
TRIM4-201ENST00000349062 FKBP5Q13451 457 aaPredicted RBP17.43■□□□□ 0.38
TRIM4-201ENST00000349062 CABLES1Q8TDN4 633 aa17.43■□□□□ 0.38
TRIM4-201ENST00000349062 ZBTB7BO15156 539 aaPredicted RBP17.43■□□□□ 0.38
TRIM4-201ENST00000349062 TECPR2O15040 1411 aa17.42■□□□□ 0.38
TRIM4-201ENST00000349062 CDK12Q9NYV4 1490 aaPredicted RBP17.42■□□□□ 0.38
TRIM4-201ENST00000349062 SETD1AO15047 1707 aaKnown RBP17.42■□□□□ 0.38
TRIM4-201ENST00000349062 FRAT2O75474 233 aaPredicted RBP17.42■□□□□ 0.38
TRIM4-201ENST00000349062 MPRIPQ6WCQ1 1025 aa17.42■□□□□ 0.38
TRIM4-201ENST00000349062 C16orf71Q8IYS4 520 aaPredicted RBP17.42■□□□□ 0.38
TRIM4-201ENST00000349062 ZNF853P0CG23 659 aa17.41■□□□□ 0.38
TRIM4-201ENST00000349062 MEIS3Q99687 375 aa17.41■□□□□ 0.38
TRIM4-201ENST00000349062 API5Q9BZZ5 524 aaKnown RBP17.41■□□□□ 0.38
TRIM4-201ENST00000349062 STK31Q9BXU1 1019 aa17.41■□□□□ 0.38
TRIM4-201ENST00000349062 FOXD4L1Q9NU39 408 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms