RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 SMAP1Q8IYB5 467 aaPredicted RBP4.27□□□□□ -1.73
SYNE1-201ENST00000341594 NUCB2P80303 420 aa4.27□□□□□ -1.73
SYNE1-201ENST00000341594 TRIM6-TRIM34B2RNG4 842 aa4.27□□□□□ -1.73
SYNE1-201ENST00000341594 TRMT1LQ7Z2T5 733 aaKnown RBP4.27□□□□□ -1.73
SYNE1-201ENST00000341594 CPLX3Q8WVH0 158 aa4.27□□□□□ -1.73
SYNE1-201ENST00000341594 PAIP2Q9BPZ3 127 aaKnown RBP4.27□□□□□ -1.73
SYNE1-201ENST00000341594 GYS2P54840 703 aa4.27□□□□□ -1.73
SYNE1-201ENST00000341594 LNPKQ9C0E8 428 aa4.27□□□□□ -1.73
SYNE1-201ENST00000341594 RNF20Q5VTR2 975 aa4.27□□□□□ -1.73
SYNE1-201ENST00000341594 CLEC17AQ6ZS10 378 aa4.27□□□□□ -1.73
SYNE1-201ENST00000341594 CWC22Q9HCG8 908 aaKnown RBP4.27□□□□□ -1.73
SYNE1-201ENST00000341594 HTATSF1O43719 755 aaKnown RBP4.27□□□□□ -1.73
SYNE1-201ENST00000341594 HGSO14964 777 aaPredicted RBP4.27□□□□□ -1.73
SYNE1-201ENST00000341594 FAM107BQ9H098 131 aa4.27□□□□□ -1.73
SYNE1-201ENST00000341594 ATAD2BQ9ULI0 1458 aa4.27□□□□□ -1.73
SYNE1-201ENST00000341594 CCDC7Q96M83 1385 aa4.27□□□□□ -1.73
SYNE1-201ENST00000341594 RNASE9P60153 205 aaKnown RBP4.27□□□□□ -1.73
SYNE1-201ENST00000341594 KDM5DQ9BY66 1539 aa4.27□□□□□ -1.73
SYNE1-201ENST00000341594 NPM3O75607 178 aaKnown RBP4.27□□□□□ -1.73
SYNE1-201ENST00000341594 DDX49Q9Y6V7 483 aaKnown RBP4.27□□□□□ -1.73
SYNE1-201ENST00000341594 PTPN23Q9H3S7 1636 aa4.27□□□□□ -1.73
SYNE1-201ENST00000341594 RETREG2Q8NC44 543 aa4.26□□□□□ -1.73
SYNE1-201ENST00000341594 NUDCQ9Y266 331 aa4.26□□□□□ -1.73
SYNE1-201ENST00000341594 CROCC2H7BZ55 1655 aa4.26□□□□□ -1.73
SYNE1-201ENST00000341594 ITPRIPQ8IWB1 547 aa4.26□□□□□ -1.73
SYNE1-201ENST00000341594 TPM1P09493 284 aa4.26□□□□□ -1.73
SYNE1-201ENST00000341594 THUMPD2Q9BTF0 503 aaKnown RBP4.26□□□□□ -1.73
SYNE1-201ENST00000341594 PANK3Q9H999 370 aa4.26□□□□□ -1.73
SYNE1-201ENST00000341594 UTP3Q9NQZ2 479 aaKnown RBP eCLIP4.26□□□□□ -1.73
SYNE1-201ENST00000341594 XRCC6P12956 609 aaKnown RBP eCLIP4.26□□□□□ -1.73
SYNE1-201ENST00000341594 HOXA7P31268 230 aaPredicted RBP4.26□□□□□ -1.73
SYNE1-201ENST00000341594 GPS2Q13227 327 aa4.26□□□□□ -1.73
SYNE1-201ENST00000341594 TTC19Q6DKK2 380 aaPredicted RBP4.26□□□□□ -1.73
SYNE1-201ENST00000341594 DRC1Q96MC2 740 aa4.26□□□□□ -1.73
SYNE1-201ENST00000341594 CLASP1Q7Z460 1538 aa4.26□□□□□ -1.73
SYNE1-201ENST00000341594 GOLGA8FQ08AF8 430 aa4.26□□□□□ -1.73
SYNE1-201ENST00000341594 GOLGA8DPQ0D2H9 430 aa4.26□□□□□ -1.73
SYNE1-201ENST00000341594 CDR1P51861 262 aa4.26□□□□□ -1.73
SYNE1-201ENST00000341594 KIF13AQ9H1H9 1805 aa4.26□□□□□ -1.73
SYNE1-201ENST00000341594 EAPPQ56P03 285 aaPredicted RBP4.26□□□□□ -1.73
SYNE1-201ENST00000341594 EHBP1L1Q8N3D4 1523 aa4.26□□□□□ -1.73
SYNE1-201ENST00000341594 FRMD3A2A2Y4 597 aa4.26□□□□□ -1.73
SYNE1-201ENST00000341594 SAMD9Q5K651 1589 aa4.26□□□□□ -1.73
SYNE1-201ENST00000341594 RBM28Q9NW13 759 aaKnown RBP4.26□□□□□ -1.73
SYNE1-201ENST00000341594 TMCO5BA8MYB1 307 aa4.26□□□□□ -1.73
SYNE1-201ENST00000341594 FOXD4Q12950 439 aaPredicted RBP4.26□□□□□ -1.73
SYNE1-201ENST00000341594 KDM5AP29375 1690 aaKnown RBP4.26□□□□□ -1.73
SYNE1-201ENST00000341594 MYO5AQ9Y4I1 1855 aaKnown RBP4.26□□□□□ -1.73
SYNE1-201ENST00000341594 PDZRN3Q9UPQ7 1066 aa4.25□□□□□ -1.73
SYNE1-201ENST00000341594 KIAA2012Q0VF49 1180 aa4.25□□□□□ -1.73
SYNE1-201ENST00000341594 DUSP27Q5VZP5 1158 aa4.25□□□□□ -1.73
SYNE1-201ENST00000341594 PRM3Q9NNZ6 103 aa4.25□□□□□ -1.73
SYNE1-201ENST00000341594 UHRF1BP1Q6BDS2 1440 aa4.25□□□□□ -1.73
SYNE1-201ENST00000341594 GUCY1B3Q02153 619 aa4.25□□□□□ -1.73
SYNE1-201ENST00000341594 ATP6V1DQ9Y5K8 247 aa4.25□□□□□ -1.73
SYNE1-201ENST00000341594 RAB3GAP2Q9H2M9 1393 aa4.25□□□□□ -1.73
SYNE1-201ENST00000341594 SYCP1Q15431 976 aa4.25□□□□□ -1.73
SYNE1-201ENST00000341594 NCOA1Q15788 1441 aa4.25□□□□□ -1.73
SYNE1-201ENST00000341594 TUBGCP6Q96RT7 1819 aa4.25□□□□□ -1.73
SYNE1-201ENST00000341594 HDAC5Q9UQL6 1122 aa4.25□□□□□ -1.73
SYNE1-201ENST00000341594 CASC1Q6TDU7 716 aa4.25□□□□□ -1.73
SYNE1-201ENST00000341594 FAM43BQ6ZT52 329 aaPredicted RBP4.25□□□□□ -1.73
SYNE1-201ENST00000341594 ITSN1Q15811 1721 aa4.25□□□□□ -1.73
SYNE1-201ENST00000341594 IPO8O15397 1037 aaKnown RBP4.25□□□□□ -1.73
SYNE1-201ENST00000341594 SCAF11Q99590 1463 aaKnown RBP4.25□□□□□ -1.73
SYNE1-201ENST00000341594 CWC15Q9P013 229 aaKnown RBP4.25□□□□□ -1.73
SYNE1-201ENST00000341594 MNS1Q8NEH6 495 aa4.25□□□□□ -1.73
SYNE1-201ENST00000341594 TPD52L1Q16890 204 aaPredicted RBP4.25□□□□□ -1.73
SYNE1-201ENST00000341594 SETSIPP0DME0 302 aa4.25□□□□□ -1.73
SYNE1-201ENST00000341594 ZNF638Q14966 1978 aaKnown RBP4.25□□□□□ -1.73
SYNE1-201ENST00000341594 DNMT1P26358 1616 aaKnown RBP4.25□□□□□ -1.73
SYNE1-201ENST00000341594 DIXDC1Q155Q3 683 aa4.25□□□□□ -1.73
SYNE1-201ENST00000341594 RAPGEF2Q9Y4G8 1499 aa4.24□□□□□ -1.73
SYNE1-201ENST00000341594 SSFA2P28290 1259 aa4.24□□□□□ -1.73
SYNE1-201ENST00000341594 GTF2F1P35269 517 aaKnown RBP eCLIP4.24□□□□□ -1.73
SYNE1-201ENST00000341594 PMFBP1Q8TBY8 1022 aa4.24□□□□□ -1.73
SYNE1-201ENST00000341594 DEF6Q9H4E7 631 aa4.24□□□□□ -1.73
SYNE1-201ENST00000341594 ADCY10Q96PN6 1610 aa4.24□□□□□ -1.73
SYNE1-201ENST00000341594 DCTN1Q14203 1278 aa4.24□□□□□ -1.73
SYNE1-201ENST00000341594 ATP2B2Q01814 1243 aa4.24□□□□□ -1.73
SYNE1-201ENST00000341594 NLRP13Q86W25 1043 aa4.24□□□□□ -1.73
SYNE1-201ENST00000341594 CCDC85AQ96PX6 553 aaPredicted RBP4.24□□□□□ -1.73
SYNE1-201ENST00000341594 KIAA1107Q9UPP5 1409 aa4.24□□□□□ -1.73
SYNE1-201ENST00000341594 UVSSAQ2YD98 709 aa4.24□□□□□ -1.73
SYNE1-201ENST00000341594 TEX35Q5T0J7 233 aa4.24□□□□□ -1.73
SYNE1-201ENST00000341594 CECR2Q9BXF3 1484 aa4.24□□□□□ -1.73
SYNE1-201ENST00000341594 CHMP5Q9NZZ3 219 aa4.24□□□□□ -1.73
SYNE1-201ENST00000341594 WWC3Q9ULE0 1092 aa4.24□□□□□ -1.73
SYNE1-201ENST00000341594 TUBB2AQ13885 445 aa4.23□□□□□ -1.73
SYNE1-201ENST00000341594 TUBB2BQ9BVA1 445 aa4.23□□□□□ -1.73
SYNE1-201ENST00000341594 NUP160Q12769 1436 aa4.23□□□□□ -1.73
SYNE1-201ENST00000341594 IQSEC3Q9UPP2 1182 aaPredicted RBP4.23□□□□□ -1.73
SYNE1-201ENST00000341594 RASSF4Q9H2L5 321 aa4.23□□□□□ -1.73
SYNE1-201ENST00000341594 RWDD1Q9H446 243 aaPredicted RBP4.23□□□□□ -1.73
SYNE1-201ENST00000341594 ERCC4Q92889 916 aaPredicted RBP4.23□□□□□ -1.73
SYNE1-201ENST00000341594 SLX4Q8IY92 1834 aa4.23□□□□□ -1.73
SYNE1-201ENST00000341594 PPP1R1BQ9UD71 204 aaPredicted RBP4.23□□□□□ -1.73
SYNE1-201ENST00000341594 SCAF8Q9UPN6 1271 aaKnown RBP4.23□□□□□ -1.73
SYNE1-201ENST00000341594 PBRM1Q86U86 1689 aa4.23□□□□□ -1.73
SYNE1-201ENST00000341594 PIK3R5Q8WYR1 880 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms