RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 CDC45O75419 566 aa15.98■□□□□ 0.15
HMGCS1-201ENST00000325110 BMP2KLQ5H9B9 411 aa15.98■□□□□ 0.15
HMGCS1-201ENST00000325110 DDX49Q9Y6V7 483 aaKnown RBP15.98■□□□□ 0.15
HMGCS1-201ENST00000325110 RRAGDQ9NQL2 400 aaPredicted RBP15.98■□□□□ 0.15
HMGCS1-201ENST00000325110 CASC1Q6TDU7 716 aa15.97■□□□□ 0.15
HMGCS1-201ENST00000325110 RTF1Q92541 710 aaKnown RBP15.97■□□□□ 0.15
HMGCS1-201ENST00000325110 IFT57Q9NWB7 429 aa15.97■□□□□ 0.15
HMGCS1-201ENST00000325110 NLRP1Q9C000 1473 aa15.97■□□□□ 0.15
HMGCS1-201ENST00000325110 SETBP1Q9Y6X0 1596 aa15.97■□□□□ 0.15
HMGCS1-201ENST00000325110 CD2BP2O95400 341 aaKnown RBP15.97■□□□□ 0.15
HMGCS1-201ENST00000325110 SSFA2P28290 1259 aa15.97■□□□□ 0.15
HMGCS1-201ENST00000325110 K7ELQ4 463 aaPredicted RBP15.96■□□□□ 0.15
HMGCS1-201ENST00000325110 WASLO00401 505 aaPredicted RBP15.96■□□□□ 0.15
HMGCS1-201ENST00000325110 SHPRHQ149N8 1683 aa15.96■□□□□ 0.15
HMGCS1-201ENST00000325110 FOXD4L6Q3SYB3 417 aaPredicted RBP15.96■□□□□ 0.15
HMGCS1-201ENST00000325110 FOXD4L3Q6VB84 417 aaPredicted RBP15.96■□□□□ 0.15
HMGCS1-201ENST00000325110 LTV1Q96GA3 475 aaPredicted RBP15.96■□□□□ 0.15
HMGCS1-201ENST00000325110 MLH3Q9UHC1 1453 aa15.96■□□□□ 0.15
HMGCS1-201ENST00000325110 OTUD7AQ8TE49 926 aaPredicted RBP15.95■□□□□ 0.14
HMGCS1-201ENST00000325110 GRPEL1Q9HAV7 217 aa15.95■□□□□ 0.14
HMGCS1-201ENST00000325110 CFAP44Q96MT7 982 aa15.95■□□□□ 0.14
HMGCS1-201ENST00000325110 CCDC61Q9Y6R9 512 aa15.95■□□□□ 0.14
HMGCS1-201ENST00000325110 MRE11P49959 708 aa15.94■□□□□ 0.14
HMGCS1-201ENST00000325110 F6X3S4 739 aa15.94■□□□□ 0.14
HMGCS1-201ENST00000325110 SLC4A2P04920 1241 aa15.94■□□□□ 0.14
HMGCS1-201ENST00000325110 NUTM2GQ5VZR2 741 aa15.94■□□□□ 0.14
HMGCS1-201ENST00000325110 MCTP1Q6DN14 999 aa15.94■□□□□ 0.14
HMGCS1-201ENST00000325110 SIRT2Q8IXJ6 389 aa15.93■□□□□ 0.14
HMGCS1-201ENST00000325110 LMTK2Q8IWU2 1503 aa15.93■□□□□ 0.14
HMGCS1-201ENST00000325110 IL13P35225 146 aa15.93■□□□□ 0.14
HMGCS1-201ENST00000325110 TSHZ3Q63HK5 1081 aa15.93■□□□□ 0.14
HMGCS1-201ENST00000325110 GAS2L2Q8NHY3 880 aa15.93■□□□□ 0.14
HMGCS1-201ENST00000325110 ZNF428Q96B54 188 aa15.93■□□□□ 0.14
HMGCS1-201ENST00000325110 HECW2Q9P2P5 1572 aa15.93■□□□□ 0.14
HMGCS1-201ENST00000325110 PPIP5K1Q6PFW1 1433 aa15.92■□□□□ 0.14
HMGCS1-201ENST00000325110 TRIM6-TRIM34B2RNG4 842 aa15.92■□□□□ 0.14
HMGCS1-201ENST00000325110 RBM25P49756 843 aaKnown RBP15.91■□□□□ 0.14
HMGCS1-201ENST00000325110 HSP90AB2PQ58FF8 381 aa15.91■□□□□ 0.14
HMGCS1-201ENST00000325110 TSPYL4Q9UJ04 414 aa15.91■□□□□ 0.14
HMGCS1-201ENST00000325110 SLC26A8Q96RN1 970 aa15.91■□□□□ 0.14
HMGCS1-201ENST00000325110 MEIS3Q99687 375 aa15.91■□□□□ 0.14
HMGCS1-201ENST00000325110 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.91■□□□□ 0.14
HMGCS1-201ENST00000325110 RILPL2Q969X0 211 aa15.91■□□□□ 0.14
HMGCS1-201ENST00000325110 CAMSAP1Q5T5Y3 1602 aa15.91■□□□□ 0.14
HMGCS1-201ENST00000325110 FRMPD1Q5SYB0 1578 aa15.91■□□□□ 0.14
HMGCS1-201ENST00000325110 AMPHP49418 695 aa15.9■□□□□ 0.14
HMGCS1-201ENST00000325110 NGDNQ8NEJ9 315 aaKnown RBP15.9■□□□□ 0.14
HMGCS1-201ENST00000325110 NCBP3Q53F19 620 aaKnown RBP15.9■□□□□ 0.14
HMGCS1-201ENST00000325110 INTS3Q68E01 1043 aaKnown RBP15.9■□□□□ 0.14
HMGCS1-201ENST00000325110 EXOC6BQ9Y2D4 811 aa15.9■□□□□ 0.14
HMGCS1-201ENST00000325110 PPLO60437 1756 aa15.9■□□□□ 0.14
HMGCS1-201ENST00000325110 NEXMIFQ5QGS0 1516 aa15.89■□□□□ 0.13
HMGCS1-201ENST00000325110 FOXO3O43524 673 aa15.89■□□□□ 0.13
HMGCS1-201ENST00000325110 STK31Q9BXU1 1019 aa15.89■□□□□ 0.13
HMGCS1-201ENST00000325110 GSPT1P15170 499 aaKnown RBP15.89■□□□□ 0.13
HMGCS1-201ENST00000325110 HAP1P54257 671 aaPredicted RBP15.89■□□□□ 0.13
HMGCS1-201ENST00000325110 MYO3AQ8NEV4 1616 aa15.88■□□□□ 0.13
HMGCS1-201ENST00000325110 FKBP5Q13451 457 aaPredicted RBP15.88■□□□□ 0.13
HMGCS1-201ENST00000325110 CAVIN1Q6NZI2 390 aaKnown RBP15.88■□□□□ 0.13
HMGCS1-201ENST00000325110 PLEKHM2Q8IWE5 1019 aa15.88■□□□□ 0.13
HMGCS1-201ENST00000325110 ARHGAP45Q92619 1136 aa15.88■□□□□ 0.13
HMGCS1-201ENST00000325110 EIF4A2Q14240 407 aaKnown RBP15.88■□□□□ 0.13
HMGCS1-201ENST00000325110 ZFYVE9O95405 1425 aa15.88■□□□□ 0.13
HMGCS1-201ENST00000325110 ST18O60284 1047 aa15.88■□□□□ 0.13
HMGCS1-201ENST00000325110 HMMRO75330 724 aa15.88■□□□□ 0.13
HMGCS1-201ENST00000325110 SNX21Q969T3 373 aa15.87■□□□□ 0.13
HMGCS1-201ENST00000325110 ZMYM3Q14202 1370 aa15.87■□□□□ 0.13
HMGCS1-201ENST00000325110 HDGFP51858 240 aaKnown RBP15.86■□□□□ 0.13
HMGCS1-201ENST00000325110 LRRC7Q96NW7 1537 aa15.86■□□□□ 0.13
HMGCS1-201ENST00000325110 RIMS2Q9UQ26 1411 aa15.86■□□□□ 0.13
HMGCS1-201ENST00000325110 ZC3H13Q5T200 1668 aaKnown RBP15.86■□□□□ 0.13
HMGCS1-201ENST00000325110 SDSP20132 328 aa15.86■□□□□ 0.13
HMGCS1-201ENST00000325110 SKOR2Q2VWA4 1001 aaPredicted RBP15.86■□□□□ 0.13
HMGCS1-201ENST00000325110 CIZ1Q9ULV3 898 aaPredicted RBP15.86■□□□□ 0.13
HMGCS1-201ENST00000325110 IFT172Q9UG01 1749 aa15.86■□□□□ 0.13
HMGCS1-201ENST00000325110 NEURL4Q96JN8 1562 aa15.86■□□□□ 0.13
HMGCS1-201ENST00000325110 PTPRMP28827 1452 aa15.85■□□□□ 0.13
HMGCS1-201ENST00000325110 RABEP1Q15276 862 aa15.85■□□□□ 0.13
HMGCS1-201ENST00000325110 TTC22Q5TAA0 569 aa15.85■□□□□ 0.13
HMGCS1-201ENST00000325110 RAB3GAP1Q15042 981 aa15.85■□□□□ 0.13
HMGCS1-201ENST00000325110 GAS2L3Q86XJ1 694 aa15.85■□□□□ 0.13
HMGCS1-201ENST00000325110 ANO2Q9NQ90 1003 aa15.85■□□□□ 0.13
HMGCS1-201ENST00000325110 FAM135BQ49AJ0 1406 aa15.84■□□□□ 0.13
HMGCS1-201ENST00000325110 ABCC4O15439 1325 aa15.84■□□□□ 0.13
HMGCS1-201ENST00000325110 PRPF40AO75400 957 aaKnown RBP15.84■□□□□ 0.13
HMGCS1-201ENST00000325110 NEK4P51957 841 aa15.84■□□□□ 0.13
HMGCS1-201ENST00000325110 CHAMP1Q96JM3 812 aa15.84■□□□□ 0.13
HMGCS1-201ENST00000325110 ARHGEF28Q8N1W1 1705 aaKnown RBP15.84■□□□□ 0.13
HMGCS1-201ENST00000325110 PRKCSHP14314 528 aaPredicted RBP15.84■□□□□ 0.13
HMGCS1-201ENST00000325110 NASPP49321 788 aaPredicted RBP15.84■□□□□ 0.13
HMGCS1-201ENST00000325110 G2E3Q7L622 706 aa15.84■□□□□ 0.13
HMGCS1-201ENST00000325110 REC8O95072 547 aa15.83■□□□□ 0.12
HMGCS1-201ENST00000325110 DCTPP1Q9H773 170 aa15.83■□□□□ 0.12
HMGCS1-201ENST00000325110 PNPLA6Q8IY17 1366 aa15.83■□□□□ 0.12
HMGCS1-201ENST00000325110 ACEP12821 1306 aa15.83■□□□□ 0.12
HMGCS1-201ENST00000325110 ESPNB1AK53 854 aa15.83■□□□□ 0.12
HMGCS1-201ENST00000325110 BAG4O95429 457 aaKnown RBP15.83■□□□□ 0.12
HMGCS1-201ENST00000325110 CEP85Q6P2H3 762 aa15.83■□□□□ 0.12
HMGCS1-201ENST00000325110 KIF2CQ99661 725 aa15.83■□□□□ 0.12
HMGCS1-201ENST00000325110 ZNF692Q9BU19 519 aaPredicted RBP15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms