RNA–Protein interactions for RNA: ENST00000324238.6

CRLF3-201, Transcript of cytokine receptor like factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CRLF3, Length 2,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRLF3-201ENST00000324238 NFE2L2Q16236 605 aa24.82■■□□□ 1.56
CRLF3-201ENST00000324238 ZMYM3Q14202 1370 aa24.82■■□□□ 1.56
CRLF3-201ENST00000324238 FSD2A1L4K1 749 aa24.81■■□□□ 1.56
CRLF3-201ENST00000324238 ALDH1L2Q3SY69 923 aa24.81■■□□□ 1.56
CRLF3-201ENST00000324238 TWISTNBQ3B726 338 aaPredicted RBP24.81■■□□□ 1.56
CRLF3-201ENST00000324238 NCBP3Q53F19 620 aaKnown RBP24.8■■□□□ 1.56
CRLF3-201ENST00000324238 RBM25P49756 843 aaKnown RBP24.8■■□□□ 1.56
CRLF3-201ENST00000324238 CFAP74Q9C0B2 1584 aa24.79■■□□□ 1.56
CRLF3-201ENST00000324238 LRRC7Q96NW7 1537 aa24.78■■□□□ 1.56
CRLF3-201ENST00000324238 GAS2L3Q86XJ1 694 aa24.78■■□□□ 1.56
CRLF3-201ENST00000324238 PNNQ9H307 717 aaKnown RBP24.78■■□□□ 1.56
CRLF3-201ENST00000324238 OTUD7AQ8TE49 926 aaPredicted RBP24.78■■□□□ 1.56
CRLF3-201ENST00000324238 BMP2KLQ5H9B9 411 aa24.77■■□□□ 1.56
CRLF3-201ENST00000324238 NUDT16Q96DE0 195 aaKnown RBP24.77■■□□□ 1.56
CRLF3-201ENST00000324238 PNPLA6Q8IY17 1366 aa24.77■■□□□ 1.56
CRLF3-201ENST00000324238 AEBP1Q8IUX7 1158 aa24.77■■□□□ 1.56
CRLF3-201ENST00000324238 ARHGAP31Q2M1Z3 1444 aa24.76■■□□□ 1.55
CRLF3-201ENST00000324238 GAS2L2Q8NHY3 880 aa24.76■■□□□ 1.55
CRLF3-201ENST00000324238 SSFA2P28290 1259 aa24.75■■□□□ 1.55
CRLF3-201ENST00000324238 METP08581 1390 aa24.75■■□□□ 1.55
CRLF3-201ENST00000324238 WASLO00401 505 aaPredicted RBP24.75■■□□□ 1.55
CRLF3-201ENST00000324238 TSPOAP1O95153 1857 aa24.75■■□□□ 1.55
CRLF3-201ENST00000324238 SMARCA5O60264 1052 aaPredicted RBP24.74■■□□□ 1.55
CRLF3-201ENST00000324238 IL13P35225 146 aa24.74■■□□□ 1.55
CRLF3-201ENST00000324238 COG3Q96JB2 828 aa24.74■■□□□ 1.55
CRLF3-201ENST00000324238 GRPEL1Q9HAV7 217 aa24.74■■□□□ 1.55
CRLF3-201ENST00000324238 GSPT1P15170 499 aaKnown RBP24.73■■□□□ 1.55
CRLF3-201ENST00000324238 DDIT3P35638 169 aa24.73■■□□□ 1.55
CRLF3-201ENST00000324238 ALKQ9UM73 1620 aa24.73■■□□□ 1.55
CRLF3-201ENST00000324238 GNAI1P63096 354 aa24.73■■□□□ 1.55
CRLF3-201ENST00000324238 MIS18AQ9NYP9 233 aa24.72■■□□□ 1.55
CRLF3-201ENST00000324238 TMEM131LA2VDJ0 1609 aa24.72■■□□□ 1.55
CRLF3-201ENST00000324238 FAM135BQ49AJ0 1406 aa24.71■■□□□ 1.55
CRLF3-201ENST00000324238 DDX11L8A8MPP1 907 aa24.71■■□□□ 1.55
CRLF3-201ENST00000324238 GCC1Q96CN9 775 aa24.71■■□□□ 1.55
CRLF3-201ENST00000324238 NAP1L5Q96NT1 182 aaPredicted RBP24.71■■□□□ 1.55
CRLF3-201ENST00000324238 RIMS2Q9UQ26 1411 aa24.71■■□□□ 1.55
CRLF3-201ENST00000324238 MCM10Q7L590 875 aa24.7■■□□□ 1.55
CRLF3-201ENST00000324238 SNX21Q969T3 373 aa24.7■■□□□ 1.55
CRLF3-201ENST00000324238 ZFYVE9O95405 1425 aa24.7■■□□□ 1.54
CRLF3-201ENST00000324238 ARHGEF40Q8TER5 1519 aa24.7■■□□□ 1.54
CRLF3-201ENST00000324238 SLC26A8Q96RN1 970 aa24.69■■□□□ 1.54
CRLF3-201ENST00000324238 SULT6B1Q6IMI4 303 aa24.69■■□□□ 1.54
CRLF3-201ENST00000324238 IFT57Q9NWB7 429 aa24.68■■□□□ 1.54
CRLF3-201ENST00000324238 K7ELQ4 463 aaPredicted RBP24.68■■□□□ 1.54
CRLF3-201ENST00000324238 CEBPAP49715 358 aaPredicted RBP24.68■■□□□ 1.54
CRLF3-201ENST00000324238 MRE11P49959 708 aa24.68■■□□□ 1.54
CRLF3-201ENST00000324238 CHAMP1Q96JM3 812 aa24.68■■□□□ 1.54
CRLF3-201ENST00000324238 PREX1Q8TCU6 1659 aa24.68■■□□□ 1.54
CRLF3-201ENST00000324238 RICTORQ6R327 1708 aa24.67■■□□□ 1.54
CRLF3-201ENST00000324238 PLEKHG5O94827 1062 aa24.67■■□□□ 1.54
CRLF3-201ENST00000324238 RAB3GAP1Q15042 981 aa24.67■■□□□ 1.54
CRLF3-201ENST00000324238 PLEKHM2Q8IWE5 1019 aa24.67■■□□□ 1.54
CRLF3-201ENST00000324238 ZNF853P0CG23 659 aa24.66■■□□□ 1.54
CRLF3-201ENST00000324238 CCDC61Q9Y6R9 512 aa24.66■■□□□ 1.54
CRLF3-201ENST00000324238 ERBB4Q15303 1308 aa24.66■■□□□ 1.54
CRLF3-201ENST00000324238 CFAP44Q96MT7 982 aa24.66■■□□□ 1.54
CRLF3-201ENST00000324238 ABCC4O15439 1325 aa24.65■■□□□ 1.54
CRLF3-201ENST00000324238 PKP1Q13835 747 aa24.65■■□□□ 1.54
CRLF3-201ENST00000324238 GBP4Q96PP9 640 aa24.65■■□□□ 1.54
CRLF3-201ENST00000324238 NCLP19338 710 aaKnown RBP24.64■■□□□ 1.54
CRLF3-201ENST00000324238 CDC45O75419 566 aa24.64■■□□□ 1.53
CRLF3-201ENST00000324238 HSP90AB2PQ58FF8 381 aa24.63■■□□□ 1.53
CRLF3-201ENST00000324238 FOXD4L5Q5VV16 416 aaPredicted RBP24.63■■□□□ 1.53
CRLF3-201ENST00000324238 FOXD4L4Q8WXT5 416 aaPredicted RBP24.63■■□□□ 1.53
CRLF3-201ENST00000324238 NCOA3Q9Y6Q9 1424 aa24.63■■□□□ 1.53
CRLF3-201ENST00000324238 ARHGAP45Q92619 1136 aa24.63■■□□□ 1.53
CRLF3-201ENST00000324238 PRR36Q9H6K5 1346 aa24.62■■□□□ 1.53
CRLF3-201ENST00000324238 TSHZ3Q63HK5 1081 aa24.62■■□□□ 1.53
CRLF3-201ENST00000324238 A2ML1A8K2U0 1454 aa24.62■■□□□ 1.53
CRLF3-201ENST00000324238 AK9Q5TCS8 1911 aa24.61■■□□□ 1.53
CRLF3-201ENST00000324238 MAP2P11137 1827 aaKnown RBP24.61■■□□□ 1.53
CRLF3-201ENST00000324238 CALD1Q05682 793 aaKnown RBP24.61■■□□□ 1.53
CRLF3-201ENST00000324238 NUTM2GQ5VZR2 741 aa24.61■■□□□ 1.53
CRLF3-201ENST00000324238 MED14O60244 1454 aa24.61■■□□□ 1.53
CRLF3-201ENST00000324238 BRPF1P55201 1214 aaPredicted RBP24.6■■□□□ 1.53
CRLF3-201ENST00000324238 SLC4A10Q6U841 1118 aa24.6■■□□□ 1.53
CRLF3-201ENST00000324238 MEIS3Q99687 375 aa24.6■■□□□ 1.53
CRLF3-201ENST00000324238 API5Q9BZZ5 524 aaKnown RBP24.6■■□□□ 1.53
CRLF3-201ENST00000324238 FOXO3O43524 673 aa24.6■■□□□ 1.53
CRLF3-201ENST00000324238 F6X3S4 739 aa24.59■■□□□ 1.53
CRLF3-201ENST00000324238 ZNF428Q96B54 188 aa24.59■■□□□ 1.53
CRLF3-201ENST00000324238 DDX49Q9Y6V7 483 aaKnown RBP24.59■■□□□ 1.53
CRLF3-201ENST00000324238 PTCH1Q13635 1447 aa24.58■■□□□ 1.53
CRLF3-201ENST00000324238 NECTIN2Q92692 538 aa24.58■■□□□ 1.53
CRLF3-201ENST00000324238 EIF4A2Q14240 407 aaKnown RBP24.58■■□□□ 1.53
CRLF3-201ENST00000324238 MCTP1Q6DN14 999 aa24.58■■□□□ 1.53
CRLF3-201ENST00000324238 DCTPP1Q9H773 170 aa24.57■■□□□ 1.52
CRLF3-201ENST00000324238 TTC22Q5TAA0 569 aa24.57■■□□□ 1.52
CRLF3-201ENST00000324238 ZGPATQ8N5A5 531 aaKnown RBP24.57■■□□□ 1.52
CRLF3-201ENST00000324238 SDSP20132 328 aa24.56■■□□□ 1.52
CRLF3-201ENST00000324238 BAG4O95429 457 aaKnown RBP24.55■■□□□ 1.52
CRLF3-201ENST00000324238 CIZ1Q9ULV3 898 aaPredicted RBP24.55■■□□□ 1.52
CRLF3-201ENST00000324238 CPS1P31327 1500 aa24.55■■□□□ 1.52
CRLF3-201ENST00000324238 ACEP12821 1306 aa24.55■■□□□ 1.52
CRLF3-201ENST00000324238 TRIM44Q96DX7 344 aaPredicted RBP24.54■■□□□ 1.52
CRLF3-201ENST00000324238 CHMP4BQ9H444 224 aaKnown RBP24.54■■□□□ 1.52
CRLF3-201ENST00000324238 ESPNB1AK53 854 aa24.54■■□□□ 1.52
CRLF3-201ENST00000324238 SLC4A2P04920 1241 aa24.54■■□□□ 1.52
CRLF3-201ENST00000324238 NOL8Q76FK4 1167 aaKnown RBP24.54■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms