RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 FAM43AQ8N2R8 423 aa27.55■■■□□ 2
SHMT1-201ENST00000316694 MBIPQ9NS73 344 aa27.54■■■□□ 2
SHMT1-201ENST00000316694 AGLP35573 1532 aa27.53■■■□□ 2
SHMT1-201ENST00000316694 RIMBP3CA6NJZ7 1639 aa27.53■■■□□ 2
SHMT1-201ENST00000316694 RIMBP3BA6NNM3 1639 aa27.53■■■□□ 2
SHMT1-201ENST00000316694 RIMBP3Q9UFD9 1639 aa27.53■■■□□ 2
SHMT1-201ENST00000316694 BMP2KLQ5H9B9 411 aa27.53■■■□□ 2
SHMT1-201ENST00000316694 IFT57Q9NWB7 429 aa27.53■■■□□ 2
SHMT1-201ENST00000316694 ZRANB1Q9UGI0 708 aa27.53■■■□□ 2
SHMT1-201ENST00000316694 IL13P35225 146 aa27.52■■■□□ 2
SHMT1-201ENST00000316694 GCC1Q96CN9 775 aa27.52■■■□□ 2
SHMT1-201ENST00000316694 CHMP4BQ9H444 224 aaKnown RBP27.52■■■□□ 2
SHMT1-201ENST00000316694 SPATA31D1Q6ZQQ2 1576 aa27.52■■■□□ 2
SHMT1-201ENST00000316694 SETD1AO15047 1707 aaKnown RBP27.52■■■□□ 2
SHMT1-201ENST00000316694 ARHGAP45Q92619 1136 aa27.52■■■□□ 2
SHMT1-201ENST00000316694 DLC1Q96QB1 1528 aa27.52■■■□□ 2
SHMT1-201ENST00000316694 TXNDC2Q86VQ3 553 aa27.51■■■□□ 2
SHMT1-201ENST00000316694 NCKAP5LQ9HCH0 1330 aa27.51■■□□□ 1.99
SHMT1-201ENST00000316694 REREQ9P2R6 1566 aa27.51■■□□□ 1.99
SHMT1-201ENST00000316694 GOLGA6L3A6NEY3 463 aa27.5■■□□□ 1.99
SHMT1-201ENST00000316694 PTCH1Q13635 1447 aa27.5■■□□□ 1.99
SHMT1-201ENST00000316694 METP08581 1390 aa27.5■■□□□ 1.99
SHMT1-201ENST00000316694 TRAK2O60296 914 aa27.5■■□□□ 1.99
SHMT1-201ENST00000316694 TWISTNBQ3B726 338 aaPredicted RBP27.5■■□□□ 1.99
SHMT1-201ENST00000316694 WASLO00401 505 aaPredicted RBP27.49■■□□□ 1.99
SHMT1-201ENST00000316694 ZNF692Q9BU19 519 aaPredicted RBP27.49■■□□□ 1.99
SHMT1-201ENST00000316694 PIK3R4Q99570 1358 aa27.48■■□□□ 1.99
SHMT1-201ENST00000316694 ZNF853P0CG23 659 aa27.47■■□□□ 1.99
SHMT1-201ENST00000316694 RRS1Q15050 365 aaKnown RBP27.47■■□□□ 1.99
SHMT1-201ENST00000316694 SIRT2Q8IXJ6 389 aa27.47■■□□□ 1.99
SHMT1-201ENST00000316694 EDC4Q6P2E9 1401 aaKnown RBP27.47■■□□□ 1.99
SHMT1-201ENST00000316694 HSP90AB1P08238 724 aaKnown RBP27.47■■□□□ 1.99
SHMT1-201ENST00000316694 C8orf58Q8NAV2 365 aa27.47■■□□□ 1.99
SHMT1-201ENST00000316694 SNX21Q969T3 373 aa27.47■■□□□ 1.99
SHMT1-201ENST00000316694 ABCC4O15439 1325 aa27.47■■□□□ 1.99
SHMT1-201ENST00000316694 FAM83GA6ND36 823 aa27.46■■□□□ 1.99
SHMT1-201ENST00000316694 NCOA3Q9Y6Q9 1424 aa27.45■■□□□ 1.99
SHMT1-201ENST00000316694 XRCC6P12956 609 aaKnown RBP eCLIP27.45■■□□□ 1.99
SHMT1-201ENST00000316694 CDK12Q9NYV4 1490 aaPredicted RBP27.45■■□□□ 1.98
SHMT1-201ENST00000316694 CPSF1Q10570 1443 aaKnown RBP27.45■■□□□ 1.98
SHMT1-201ENST00000316694 CFAP44Q96MT7 982 aa27.45■■□□□ 1.98
SHMT1-201ENST00000316694 NRXN3Q9Y4C0 1643 aa27.44■■□□□ 1.98
SHMT1-201ENST00000316694 TBC1D9Q6ZT07 1266 aa27.44■■□□□ 1.98
SHMT1-201ENST00000316694 COG3Q96JB2 828 aa27.44■■□□□ 1.98
SHMT1-201ENST00000316694 LMOD3Q0VAK6 560 aa27.44■■□□□ 1.98
SHMT1-201ENST00000316694 FSD2A1L4K1 749 aa27.43■■□□□ 1.98
SHMT1-201ENST00000316694 DCTN1Q14203 1278 aa27.43■■□□□ 1.98
SHMT1-201ENST00000316694 NUDT16Q96DE0 195 aaKnown RBP27.43■■□□□ 1.98
SHMT1-201ENST00000316694 DDX11L8A8MPP1 907 aa27.43■■□□□ 1.98
SHMT1-201ENST00000316694 DLG5Q8TDM6 1919 aa27.43■■□□□ 1.98
SHMT1-201ENST00000316694 DDIT3P35638 169 aa27.42■■□□□ 1.98
SHMT1-201ENST00000316694 KIF2CQ99661 725 aa27.42■■□□□ 1.98
SHMT1-201ENST00000316694 HSP90AA1P07900 732 aaKnown RBP27.41■■□□□ 1.98
SHMT1-201ENST00000316694 API5Q9BZZ5 524 aaKnown RBP27.41■■□□□ 1.98
SHMT1-201ENST00000316694 ESF1Q9H501 851 aaKnown RBP27.41■■□□□ 1.98
SHMT1-201ENST00000316694 PANK2Q9BZ23 570 aa27.4■■□□□ 1.98
SHMT1-201ENST00000316694 FOXD4L1Q9NU39 408 aa27.4■■□□□ 1.98
SHMT1-201ENST00000316694 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.39■■□□□ 1.98
SHMT1-201ENST00000316694 AATKQ6ZMQ8 1374 aa27.39■■□□□ 1.98
SHMT1-201ENST00000316694 TNPO1Q92973 898 aaKnown RBP27.39■■□□□ 1.97
SHMT1-201ENST00000316694 CD2BP2O95400 341 aaKnown RBP27.38■■□□□ 1.97
SHMT1-201ENST00000316694 CPS1P31327 1500 aa27.37■■□□□ 1.97
SHMT1-201ENST00000316694 CCDC61Q9Y6R9 512 aa27.37■■□□□ 1.97
SHMT1-201ENST00000316694 RBM42Q9BTD8 480 aaKnown RBP27.36■■□□□ 1.97
SHMT1-201ENST00000316694 RRAGDQ9NQL2 400 aaPredicted RBP27.36■■□□□ 1.97
SHMT1-201ENST00000316694 CIZ1Q9ULV3 898 aaPredicted RBP27.34■■□□□ 1.97
SHMT1-201ENST00000316694 CDC45O75419 566 aa27.34■■□□□ 1.97
SHMT1-201ENST00000316694 K7ELQ4 463 aaPredicted RBP27.32■■□□□ 1.96
SHMT1-201ENST00000316694 AEBP1Q8IUX7 1158 aa27.32■■□□□ 1.96
SHMT1-201ENST00000316694 GSPT1P15170 499 aaKnown RBP27.32■■□□□ 1.96
SHMT1-201ENST00000316694 GBP4Q96PP9 640 aa27.32■■□□□ 1.96
SHMT1-201ENST00000316694 PRR36Q9H6K5 1346 aa27.31■■□□□ 1.96
SHMT1-201ENST00000316694 EIF5BO60841 1220 aaKnown RBP27.31■■□□□ 1.96
SHMT1-201ENST00000316694 RAB3GAP1Q15042 981 aa27.31■■□□□ 1.96
SHMT1-201ENST00000316694 KRT24Q2M2I5 525 aa27.31■■□□□ 1.96
SHMT1-201ENST00000316694 PLEKHM2Q8IWE5 1019 aa27.3■■□□□ 1.96
SHMT1-201ENST00000316694 KNDC1Q76NI1 1749 aa27.3■■□□□ 1.96
SHMT1-201ENST00000316694 MRE11P49959 708 aa27.3■■□□□ 1.96
SHMT1-201ENST00000316694 SULT6B1Q6IMI4 303 aa27.3■■□□□ 1.96
SHMT1-201ENST00000316694 MON2Q7Z3U7 1717 aa27.29■■□□□ 1.96
SHMT1-201ENST00000316694 NUTM2FA1L443 756 aa27.29■■□□□ 1.96
SHMT1-201ENST00000316694 DCTPP1Q9H773 170 aa27.29■■□□□ 1.96
SHMT1-201ENST00000316694 HDGFP51858 240 aaKnown RBP27.27■■□□□ 1.96
SHMT1-201ENST00000316694 C16orf71Q8IYS4 520 aaPredicted RBP27.27■■□□□ 1.96
SHMT1-201ENST00000316694 GRPEL1Q9HAV7 217 aa27.27■■□□□ 1.96
SHMT1-201ENST00000316694 EIF4A2Q14240 407 aaKnown RBP27.26■■□□□ 1.95
SHMT1-201ENST00000316694 INTS3Q68E01 1043 aaKnown RBP27.26■■□□□ 1.95
SHMT1-201ENST00000316694 MCM10Q7L590 875 aa27.26■■□□□ 1.95
SHMT1-201ENST00000316694 KIF24Q5T7B8 1368 aa27.26■■□□□ 1.95
SHMT1-201ENST00000316694 ROBO2Q9HCK4 1378 aa27.26■■□□□ 1.95
SHMT1-201ENST00000316694 GAS2L2Q8NHY3 880 aa27.26■■□□□ 1.95
SHMT1-201ENST00000316694 SIRT1Q96EB6 747 aa27.26■■□□□ 1.95
SHMT1-201ENST00000316694 TNRQ92752 1358 aa27.25■■□□□ 1.95
SHMT1-201ENST00000316694 TECPR2O15040 1411 aa27.25■■□□□ 1.95
SHMT1-201ENST00000316694 C3P01024 1663 aa27.25■■□□□ 1.95
SHMT1-201ENST00000316694 ITSN1Q15811 1721 aa27.24■■□□□ 1.95
SHMT1-201ENST00000316694 APBB1O00213 710 aa27.24■■□□□ 1.95
SHMT1-201ENST00000316694 TTC22Q5TAA0 569 aa27.24■■□□□ 1.95
SHMT1-201ENST00000316694 TMEM2Q9UHN6 1383 aa27.23■■□□□ 1.95
SHMT1-201ENST00000316694 AKAP12Q02952 1782 aa27.23■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms