RNA–Protein interactions for RNA: ENSMUST00000113706.9

Trim39-203, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim39, Length 3,204 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-203ENSMUST00000113706 Trim58Q5NCC9 485 aa20.45■□□□□ 0.86
Trim39-203ENSMUST00000113706 Cabp2Q9JLK4 216 aa20.45■□□□□ 0.86
Trim39-203ENSMUST00000113706 Zmym3Q9JLM4 1370 aa20.45■□□□□ 0.86
Trim39-203ENSMUST00000113706 Tspyl2Q7TQI8 677 aa20.44■□□□□ 0.86
Trim39-203ENSMUST00000113706 Cabp4Q8VHC5 271 aa20.44■□□□□ 0.86
Trim39-203ENSMUST00000113706 Plin1Q8CGN5 517 aa20.43■□□□□ 0.86
Trim39-203ENSMUST00000113706 Znf521Q6KAS7 1311 aa20.42■□□□□ 0.86
Trim39-203ENSMUST00000113706 Bcl11aQ9QYE3 773 aa20.41■□□□□ 0.86
Trim39-203ENSMUST00000113706 Stk31Q99MW1 1018 aa20.4■□□□□ 0.86
Trim39-203ENSMUST00000113706 Cdc37l1Q9CZP7 335 aa20.39■□□□□ 0.85
Trim39-203ENSMUST00000113706 Scn4aQ9ER60 1841 aa20.39■□□□□ 0.85
Trim39-203ENSMUST00000113706 B4galnt3Q6L8S8 986 aa20.39■□□□□ 0.85
Trim39-203ENSMUST00000113706 NudcO35685 332 aaKnown RBP20.38■□□□□ 0.85
Trim39-203ENSMUST00000113706 Smc5Q8CG46 1101 aaKnown RBP20.37■□□□□ 0.85
Trim39-203ENSMUST00000113706 Ipo9Q91YE6 1041 aa20.37■□□□□ 0.85
Trim39-203ENSMUST00000113706 Slit2Q9R1B9 1521 aa20.37■□□□□ 0.85
Trim39-203ENSMUST00000113706 Ccdc60Q8C4J0 545 aa20.37■□□□□ 0.85
Trim39-203ENSMUST00000113706 Slain2Q8CI08 581 aa20.36■□□□□ 0.85
Trim39-203ENSMUST00000113706 Ptpn23Q6PB44 1692 aa20.36■□□□□ 0.85
Trim39-203ENSMUST00000113706 Iqcf3Q9D498 203 aa20.36■□□□□ 0.85
Trim39-203ENSMUST00000113706 Ccdc171E9Q1U1 1324 aa20.36■□□□□ 0.85
Trim39-203ENSMUST00000113706 Gnai1B2RSH2 354 aa20.35■□□□□ 0.85
Trim39-203ENSMUST00000113706 Gnai3Q9DC51 354 aa20.35■□□□□ 0.85
Trim39-203ENSMUST00000113706 Ncapd2Q8K2Z4 1392 aa20.34■□□□□ 0.85
Trim39-203ENSMUST00000113706 Col18a1P39061 1774 aa20.34■□□□□ 0.85
Trim39-203ENSMUST00000113706 Hoxc9P09633 260 aa20.34■□□□□ 0.85
Trim39-203ENSMUST00000113706 Robo1O89026 1612 aa20.34■□□□□ 0.85
Trim39-203ENSMUST00000113706 Eya1P97767 591 aa20.33■□□□□ 0.85
Trim39-203ENSMUST00000113706 Ccne1Q61457 408 aa20.33■□□□□ 0.85
Trim39-203ENSMUST00000113706 Ano8Q6PB70 1060 aa20.33■□□□□ 0.85
Trim39-203ENSMUST00000113706 Wdr17E9Q271 1322 aa20.33■□□□□ 0.85
Trim39-203ENSMUST00000113706 Fyb1O35601 819 aa20.32■□□□□ 0.84
Trim39-203ENSMUST00000113706 Evi5lH3BKQ3 813 aa20.32■□□□□ 0.84
Trim39-203ENSMUST00000113706 Rad17Q6NXW6 688 aa20.32■□□□□ 0.84
Trim39-203ENSMUST00000113706 Chmp5Q9D7S9 219 aa20.32■□□□□ 0.84
Trim39-203ENSMUST00000113706 EspnQ9ET47 871 aa20.32■□□□□ 0.84
Trim39-203ENSMUST00000113706 Ppp1r3fQ9JIG4 799 aa20.32■□□□□ 0.84
Trim39-203ENSMUST00000113706 Wnk3Q80XP9 1757 aa20.32■□□□□ 0.84
Trim39-203ENSMUST00000113706 Nfat5Q9WV30 1534 aa20.32■□□□□ 0.84
Trim39-203ENSMUST00000113706 Duxf3A0A0N4SV92 674 aa20.32■□□□□ 0.84
Trim39-203ENSMUST00000113706 Dbr1Q923B1 550 aa20.32■□□□□ 0.84
Trim39-203ENSMUST00000113706 Brwd3A2AHJ4 1799 aa20.31■□□□□ 0.84
Trim39-203ENSMUST00000113706 Senp3Q9EP97 568 aaKnown RBP20.31■□□□□ 0.84
Trim39-203ENSMUST00000113706 Gm6268A2A3U9 297 aa20.3■□□□□ 0.84
Trim39-203ENSMUST00000113706 Zfp777B9EKF4 885 aa20.3■□□□□ 0.84
Trim39-203ENSMUST00000113706 G3bp1P97855 465 aaKnown RBP20.3■□□□□ 0.84
Trim39-203ENSMUST00000113706 Scaf1Q5U4C3 1256 aaKnown RBP20.3■□□□□ 0.84
Trim39-203ENSMUST00000113706 TmpoQ61033 693 aaKnown RBP20.3■□□□□ 0.84
Trim39-203ENSMUST00000113706 Tmem132eQ6IEE6 982 aa20.3■□□□□ 0.84
Trim39-203ENSMUST00000113706 Vamp4O70480 141 aa20.29■□□□□ 0.84
Trim39-203ENSMUST00000113706 Ncoa4Q5U4H9 625 aa20.29■□□□□ 0.84
Trim39-203ENSMUST00000113706 Rangap1P46061 589 aaKnown RBP20.29■□□□□ 0.84
Trim39-203ENSMUST00000113706 TimelessQ9R1X4 1197 aa20.29■□□□□ 0.84
Trim39-203ENSMUST00000113706 Trpm3Q5F4S9 1721 aa20.29■□□□□ 0.84
Trim39-203ENSMUST00000113706 Tet3Q8BG87 1668 aa20.29■□□□□ 0.84
Trim39-203ENSMUST00000113706 Gimap6Q8K349 305 aa20.28■□□□□ 0.84
Trim39-203ENSMUST00000113706 Klhdc4Q921I2 584 aa20.28■□□□□ 0.84
Trim39-203ENSMUST00000113706 Usp16Q99LG0 825 aa20.28■□□□□ 0.84
Trim39-203ENSMUST00000113706 Nsd3Q6P2L6 1439 aa20.28■□□□□ 0.84
Trim39-203ENSMUST00000113706 Rlbp1Q9Z275 317 aa20.27■□□□□ 0.84
Trim39-203ENSMUST00000113706 U2surpQ6NV83 1029 aaKnown RBP20.27■□□□□ 0.84
Trim39-203ENSMUST00000113706 Rapgef3Q8VCC8 918 aa20.27■□□□□ 0.84
Trim39-203ENSMUST00000113706 Sos1Q62245 1319 aa20.27■□□□□ 0.84
Trim39-203ENSMUST00000113706 Siglec1Q62230 1695 aa20.27■□□□□ 0.84
Trim39-203ENSMUST00000113706 AampJ3QN89 436 aa20.26■□□□□ 0.83
Trim39-203ENSMUST00000113706 Plekhm2Q80TQ5 1018 aa20.26■□□□□ 0.83
Trim39-203ENSMUST00000113706 Ltbp4Q8K4G1 1666 aa20.25■□□□□ 0.83
Trim39-203ENSMUST00000113706 Znf330Q922H9 316 aa20.25■□□□□ 0.83
Trim39-203ENSMUST00000113706 PrkcshO08795 521 aa20.24■□□□□ 0.83
Trim39-203ENSMUST00000113706 Ahnak2E9PYB0 1738 aaKnown RBP20.24■□□□□ 0.83
Trim39-203ENSMUST00000113706 Kcna6Q61923 529 aa20.24■□□□□ 0.83
Trim39-203ENSMUST00000113706 Arfgef2A2A5R2 1792 aa20.24■□□□□ 0.83
Trim39-203ENSMUST00000113706 Nectin2P32507 530 aa20.23■□□□□ 0.83
Trim39-203ENSMUST00000113706 TatQ8QZR1 454 aa20.23■□□□□ 0.83
Trim39-203ENSMUST00000113706 Farp2Q91VS8 1065 aa20.23■□□□□ 0.83
Trim39-203ENSMUST00000113706 Maco1Q7TQE6 664 aaKnown RBP20.23■□□□□ 0.83
Trim39-203ENSMUST00000113706 Tmco5bQ80X59 307 aa20.23■□□□□ 0.83
Trim39-203ENSMUST00000113706 KarsQ99MN1 595 aaKnown RBP20.22■□□□□ 0.83
Trim39-203ENSMUST00000113706 GnpatP98192 678 aa20.21■□□□□ 0.83
Trim39-203ENSMUST00000113706 Pip4k2bQ80XI4 416 aa20.21■□□□□ 0.83
Trim39-203ENSMUST00000113706 Kcnh5Q920E3 988 aa20.21■□□□□ 0.83
Trim39-203ENSMUST00000113706 Snap23O09044 210 aa20.21■□□□□ 0.83
Trim39-203ENSMUST00000113706 Adgrb1Q3UHD1 1582 aa20.2■□□□□ 0.82
Trim39-203ENSMUST00000113706 Larp1bA0A0A6YXJ7 370 aaKnown RBP20.2■□□□□ 0.82
Trim39-203ENSMUST00000113706 Q3UPC7 1272 aa20.2■□□□□ 0.82
Trim39-203ENSMUST00000113706 Dnajc10Q9DC23 793 aa20.2■□□□□ 0.82
Trim39-203ENSMUST00000113706 ChgaP26339 463 aaKnown RBP20.19■□□□□ 0.82
Trim39-203ENSMUST00000113706 Ggnbp2Q5SV77 696 aa20.19■□□□□ 0.82
Trim39-203ENSMUST00000113706 Rtf1A2AQ19 715 aaKnown RBP20.19■□□□□ 0.82
Trim39-203ENSMUST00000113706 Nutm1Q8BHP2 1126 aa20.19■□□□□ 0.82
Trim39-203ENSMUST00000113706 Aldh1l1Q8R0Y6 902 aa20.19■□□□□ 0.82
Trim39-203ENSMUST00000113706 Atf3Q60765 181 aa20.18■□□□□ 0.82
Trim39-203ENSMUST00000113706 HypkQ9CR41 129 aa20.18■□□□□ 0.82
Trim39-203ENSMUST00000113706 Rab11fip3Q8CHD8 1047 aa20.17■□□□□ 0.82
Trim39-203ENSMUST00000113706 Kdm6aO70546 1401 aa20.17■□□□□ 0.82
Trim39-203ENSMUST00000113706 Fmnl2A2APV2 1086 aa20.17■□□□□ 0.82
Trim39-203ENSMUST00000113706 Prim1P20664 417 aa20.17■□□□□ 0.82
Trim39-203ENSMUST00000113706 Amigo3Q8C2S7 508 aa20.17■□□□□ 0.82
Trim39-203ENSMUST00000113706 Cavin2Q63918 418 aaKnown RBP20.16■□□□□ 0.82
Trim39-203ENSMUST00000113706 Dzip1Q8BMD2 852 aa20.16■□□□□ 0.82
Retrieved 100 of 22,080 RNA–protein pairs in 28.2 ms