RNA–Protein interactions for RNA: ENSMUST00000042717.12

Trim39-201, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim39, Length 3,085 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-201ENSMUST00000042717 PaskQ8CEE6 1383 aa11.32□□□□□ -0.6
Trim39-201ENSMUST00000042717 Camta1A2A891 1682 aa11.32□□□□□ -0.6
Trim39-201ENSMUST00000042717 Kcnh5Q920E3 988 aa11.32□□□□□ -0.6
Trim39-201ENSMUST00000042717 Parp14Q2EMV9 1817 aa11.31□□□□□ -0.6
Trim39-201ENSMUST00000042717 Kank1E9Q238 1360 aa11.31□□□□□ -0.6
Trim39-201ENSMUST00000042717 Ncoa4Q5U4H9 625 aa11.31□□□□□ -0.6
Trim39-201ENSMUST00000042717 U2surpQ6NV83 1029 aaKnown RBP11.31□□□□□ -0.6
Trim39-201ENSMUST00000042717 Iqcf3Q9D498 203 aa11.31□□□□□ -0.6
Trim39-201ENSMUST00000042717 Gli3Q61602 1583 aa11.3□□□□□ -0.6
Trim39-201ENSMUST00000042717 1700019A02RikA0A087WPV9 146 aa11.3□□□□□ -0.6
Trim39-201ENSMUST00000042717 Amotl2Q8K371 772 aa11.3□□□□□ -0.6
Trim39-201ENSMUST00000042717 Ubr1O70481 1757 aa11.3□□□□□ -0.6
Trim39-201ENSMUST00000042717 Map2P20357 1828 aa11.3□□□□□ -0.6
Trim39-201ENSMUST00000042717 Kif24Q6NWW5 1356 aa11.3□□□□□ -0.6
Trim39-201ENSMUST00000042717 Plekhh1Q80TI1 1356 aa11.3□□□□□ -0.6
Trim39-201ENSMUST00000042717 Ttll13A4Q9F6 804 aa11.29□□□□□ -0.6
Trim39-201ENSMUST00000042717 Kcnh8P59111 1102 aa11.29□□□□□ -0.6
Trim39-201ENSMUST00000042717 Rwdd1Q9CQK7 243 aa11.29□□□□□ -0.6
Trim39-201ENSMUST00000042717 Gm6268A2A3U9 297 aa11.29□□□□□ -0.6
Trim39-201ENSMUST00000042717 Pibf1E9Q6K3 756 aa11.29□□□□□ -0.6
Trim39-201ENSMUST00000042717 Gimap5Q8BWF2 308 aa11.29□□□□□ -0.6
Trim39-201ENSMUST00000042717 Snap23O09044 210 aa11.29□□□□□ -0.6
Trim39-201ENSMUST00000042717 TmpoQ61033 693 aaKnown RBP11.29□□□□□ -0.6
Trim39-201ENSMUST00000042717 Smim5Q8BT42 78 aa11.29□□□□□ -0.6
Trim39-201ENSMUST00000042717 Irx6Q9ER75 438 aa11.29□□□□□ -0.6
Trim39-201ENSMUST00000042717 Rbm25B2RY56 838 aaKnown RBP11.28□□□□□ -0.6
Trim39-201ENSMUST00000042717 NeflP08551 543 aa11.28□□□□□ -0.6
Trim39-201ENSMUST00000042717 Ano8Q6PB70 1060 aa11.28□□□□□ -0.6
Trim39-201ENSMUST00000042717 Klhdc4Q921I2 584 aa11.27□□□□□ -0.6
Trim39-201ENSMUST00000042717 Txnrd1Q9JMH6 613 aa11.27□□□□□ -0.6
Trim39-201ENSMUST00000042717 Gm10471E9Q1C7 252 aa11.27□□□□□ -0.61
Trim39-201ENSMUST00000042717 Rtf1A2AQ19 715 aaKnown RBP11.26□□□□□ -0.61
Trim39-201ENSMUST00000042717 Ccar1Q8CH18 1146 aaKnown RBP11.26□□□□□ -0.61
Trim39-201ENSMUST00000042717 Ciz1Q8VEH2 845 aa11.26□□□□□ -0.61
Trim39-201ENSMUST00000042717 Ggnbp2Q5SV77 696 aa11.25□□□□□ -0.61
Trim39-201ENSMUST00000042717 Pak3Q61036 559 aa11.25□□□□□ -0.61
Trim39-201ENSMUST00000042717 Nol11Q8BJW5 723 aaKnown RBP11.25□□□□□ -0.61
Trim39-201ENSMUST00000042717 Ddx54Q8K4L0 874 aaKnown RBP11.25□□□□□ -0.61
Trim39-201ENSMUST00000042717 Cdc37l1Q9CZP7 335 aa11.25□□□□□ -0.61
Trim39-201ENSMUST00000042717 TnrQ8BYI9 1358 aa11.25□□□□□ -0.61
Trim39-201ENSMUST00000042717 Ccdc60Q8C4J0 545 aa11.24□□□□□ -0.61
Trim39-201ENSMUST00000042717 Usp16Q99LG0 825 aa11.24□□□□□ -0.61
Trim39-201ENSMUST00000042717 HypkQ9CR41 129 aa11.24□□□□□ -0.61
Trim39-201ENSMUST00000042717 Scn7aB1AYL1 1681 aa11.24□□□□□ -0.61
Trim39-201ENSMUST00000042717 Zfp777B9EKF4 885 aa11.24□□□□□ -0.61
Trim39-201ENSMUST00000042717 Zranb3Q6NZP1 1069 aa11.24□□□□□ -0.61
Trim39-201ENSMUST00000042717 OptnQ8K3K8 584 aa11.23□□□□□ -0.61
Trim39-201ENSMUST00000042717 Znf330Q922H9 316 aa11.23□□□□□ -0.61
Trim39-201ENSMUST00000042717 Tmco5bQ80X59 307 aa11.23□□□□□ -0.61
Trim39-201ENSMUST00000042717 Pank1Q8K4K6 548 aa11.23□□□□□ -0.61
Trim39-201ENSMUST00000042717 Nfat5Q9WV30 1534 aa11.22□□□□□ -0.61
Trim39-201ENSMUST00000042717 NudcO35685 332 aaKnown RBP11.22□□□□□ -0.61
Trim39-201ENSMUST00000042717 Spef2Q8C9J3 1734 aa11.22□□□□□ -0.61
Trim39-201ENSMUST00000042717 Wnk3Q80XP9 1757 aa11.22□□□□□ -0.61
Trim39-201ENSMUST00000042717 Prim1P20664 417 aa11.22□□□□□ -0.61
Trim39-201ENSMUST00000042717 Nectin2P32507 530 aa11.22□□□□□ -0.61
Trim39-201ENSMUST00000042717 Ankrd50F7BE84 1390 aa11.22□□□□□ -0.61
Trim39-201ENSMUST00000042717 Gnai1B2RSH2 354 aa11.22□□□□□ -0.61
Trim39-201ENSMUST00000042717 CastP51125 788 aa11.22□□□□□ -0.61
Trim39-201ENSMUST00000042717 Gnai3Q9DC51 354 aa11.22□□□□□ -0.61
Trim39-201ENSMUST00000042717 Slc4a3P16283 1227 aa11.21□□□□□ -0.61
Trim39-201ENSMUST00000042717 CrklP47941 303 aa11.21□□□□□ -0.61
Trim39-201ENSMUST00000042717 HdgfP51859 237 aaKnown RBP11.21□□□□□ -0.61
Trim39-201ENSMUST00000042717 Gsdma3Q5Y4Y6 464 aa11.21□□□□□ -0.61
Trim39-201ENSMUST00000042717 PtprvP70289 1705 aa11.21□□□□□ -0.61
Trim39-201ENSMUST00000042717 Nid2O88322 1403 aa11.21□□□□□ -0.62
Trim39-201ENSMUST00000042717 Tnnt1O88346 262 aa11.21□□□□□ -0.62
Trim39-201ENSMUST00000042717 Cadps2Q8BYR5 1297 aa11.21□□□□□ -0.62
Trim39-201ENSMUST00000042717 Fam50bQ9WTJ8 334 aa11.21□□□□□ -0.62
Trim39-201ENSMUST00000042717 Uhrf1bp1B2KF50 1429 aa11.2□□□□□ -0.62
Trim39-201ENSMUST00000042717 Ttc21aQ8C0S4 1314 aa11.2□□□□□ -0.62
Trim39-201ENSMUST00000042717 Card10P58660 1021 aa11.2□□□□□ -0.62
Trim39-201ENSMUST00000042717 Ppp4r2Q0VGB7 417 aa11.2□□□□□ -0.62
Trim39-201ENSMUST00000042717 Ggt6Q6PDE7 497 aa11.2□□□□□ -0.62
Trim39-201ENSMUST00000042717 TkfcQ8VC30 578 aa11.2□□□□□ -0.62
Trim39-201ENSMUST00000042717 ArxO35085 564 aa11.2□□□□□ -0.62
Trim39-201ENSMUST00000042717 Hspa1lP16627 641 aa11.2□□□□□ -0.62
Trim39-201ENSMUST00000042717 Rad17Q6NXW6 688 aa11.2□□□□□ -0.62
Trim39-201ENSMUST00000042717 Qtrt2B8ZXI1 415 aa11.19□□□□□ -0.62
Trim39-201ENSMUST00000042717 Tom1O88746 492 aa11.19□□□□□ -0.62
Trim39-201ENSMUST00000042717 G3bp1P97855 465 aaKnown RBP11.19□□□□□ -0.62
Trim39-201ENSMUST00000042717 RgmbQ7TQ33 436 aa11.18□□□□□ -0.62
Trim39-201ENSMUST00000042717 Nutm1Q8BHP2 1126 aa11.18□□□□□ -0.62
Trim39-201ENSMUST00000042717 Mdc1Q5PSV9 1707 aa11.18□□□□□ -0.62
Trim39-201ENSMUST00000042717 Atp7bQ64446 1462 aa11.18□□□□□ -0.62
Trim39-201ENSMUST00000042717 Tspyl2Q7TQI8 677 aa11.17□□□□□ -0.62
Trim39-201ENSMUST00000042717 Kdm6aO70546 1401 aa11.17□□□□□ -0.62
Trim39-201ENSMUST00000042717 DccP70211 1447 aa11.17□□□□□ -0.62
Trim39-201ENSMUST00000042717 Ppp1r37Q8BKR5 712 aa11.17□□□□□ -0.62
Trim39-201ENSMUST00000042717 Ncbp3Q8BZR9 615 aaKnown RBP11.17□□□□□ -0.62
Trim39-201ENSMUST00000042717 Rab11fip3Q8CHD8 1047 aa11.17□□□□□ -0.62
Trim39-201ENSMUST00000042717 Cdhr2E9Q7P9 1308 aa11.17□□□□□ -0.62
Trim39-201ENSMUST00000042717 Col15a1O35206 1367 aa11.17□□□□□ -0.62
Trim39-201ENSMUST00000042717 Znf541Q0GGX2 1363 aa11.17□□□□□ -0.62
Trim39-201ENSMUST00000042717 Fam135bQ9DAI6 1403 aa11.16□□□□□ -0.62
Trim39-201ENSMUST00000042717 Aplp1Q03157 653 aa11.16□□□□□ -0.62
Trim39-201ENSMUST00000042717 Scaf1Q5U4C3 1256 aaKnown RBP11.16□□□□□ -0.62
Trim39-201ENSMUST00000042717 Zpr1Q62384 459 aa11.16□□□□□ -0.62
Trim39-201ENSMUST00000042717 Wdr43Q6ZQL4 677 aaKnown RBP11.16□□□□□ -0.62
Trim39-201ENSMUST00000042717 Ppp1r3fQ9JIG4 799 aa11.16□□□□□ -0.62
Retrieved 100 of 22,080 RNA–protein pairs in 44.5 ms