RNA–Protein interactions for RNA: YPL016W

SWI1, Transcript of Subunit of the SWI/SNF chromatin remodeling complex, yeast

Gene SWI1, Length 3,945 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SWI1	YPL016W	FRS2	P15625	503 aa	Known RBP	4.25	□□□□□ -1.73
SWI1	YPL016W	SEC14	P24280	304 aa	Known RBP	4.25	□□□□□ -1.73
SWI1	YPL016W	RFT1	P38206	574 aa	Predicted RBP	4.25	□□□□□ -1.73
SWI1	YPL016W	STR2	P47164	639 aa		4.25	□□□□□ -1.73
SWI1	YPL016W	YOR389W	Q08912	624 aa		4.25	□□□□□ -1.73
SWI1	YPL016W	PSO2	P30620	661 aa		4.25	□□□□□ -1.73
SWI1	YPL016W	CAF130	P53280	1122 aa	Predicted RBP	4.25	□□□□□ -1.73
SWI1	YPL016W	PKH3	Q03306	898 aa	Predicted RBP	4.25	□□□□□ -1.73
SWI1	YPL016W	TOP1	P04786	769 aa		4.24	□□□□□ -1.73
SWI1	YPL016W	HEL1	P36113	551 aa		4.24	□□□□□ -1.73
SWI1	YPL016W	BRN1	P38170	754 aa		4.24	□□□□□ -1.73
SWI1	YPL016W	RIX1	P38883	763 aa	Predicted RBP	4.24	□□□□□ -1.73
SWI1	YPL016W	TOA1	P32773	286 aa		4.24	□□□□□ -1.73
SWI1	YPL016W	EFM2	P38347	419 aa		4.24	□□□□□ -1.73
SWI1	YPL016W	ECL1	P48235	211 aa		4.24	□□□□□ -1.73
SWI1	YPL016W	KRE28	Q04431	385 aa		4.24	□□□□□ -1.73
SWI1	YPL016W	YLR177W	Q06251	628 aa		4.24	□□□□□ -1.73
SWI1	YPL016W	CYC8	P14922	966 aa		4.24	□□□□□ -1.73
SWI1	YPL016W	HXT5	P38695	592 aa		4.24	□□□□□ -1.73
SWI1	YPL016W	YGL242C	P53066	181 aa		4.24	□□□□□ -1.73
SWI1	YPL016W	HIM1	Q06674	414 aa		4.24	□□□□□ -1.73
SWI1	YPL016W	RTT109	Q07794	436 aa		4.24	□□□□□ -1.73
SWI1	YPL016W	GNT1	Q12096	491 aa		4.24	□□□□□ -1.73
SWI1	YPL016W	YPL150W	Q12152	901 aa		4.24	□□□□□ -1.73
SWI1	YPL016W	STE6	P12866	1290 aa		4.23	□□□□□ -1.73
SWI1	YPL016W	HEL2	Q05580	639 aa	Known RBP	4.23	□□□□□ -1.73
SWI1	YPL016W	CMS1	Q07897	291 aa	Known RBP	4.23	□□□□□ -1.73
SWI1	YPL016W	LSO1	Q3E827	93 aa		4.23	□□□□□ -1.73
SWI1	YPL016W	PTC4	P38089	393 aa		4.23	□□□□□ -1.73
SWI1	YPL016W	SEC26	P41810	973 aa	Known RBP	4.23	□□□□□ -1.73
SWI1	YPL016W	YRB1	P41920	201 aa	Known RBP	4.23	□□□□□ -1.73
SWI1	YPL016W	YNL050C	P53952	270 aa		4.23	□□□□□ -1.73
SWI1	YPL016W	MVP1	P40959	511 aa	Known RBP	4.23	□□□□□ -1.73
SWI1	YPL016W	CEP3	P40969	608 aa		4.23	□□□□□ -1.73
SWI1	YPL016W	SUB1	P54000	292 aa	Known RBP	4.23	□□□□□ -1.73
SWI1	YPL016W	FLO11	P08640	1367 aa		4.22	□□□□□ -1.73
SWI1	YPL016W	MST1	P07236	462 aa		4.22	□□□□□ -1.73
SWI1	YPL016W	CMP2	P14747	604 aa		4.22	□□□□□ -1.73
SWI1	YPL016W	RFC1	P38630	861 aa	Known RBP	4.22	□□□□□ -1.73
SWI1	YPL016W	YER156C	P40093	338 aa	Known RBP	4.22	□□□□□ -1.73
SWI1	YPL016W	RPL17B	P46990	184 aa	Known RBP	4.22	□□□□□ -1.73
SWI1	YPL016W	APL4	Q12028	832 aa		4.22	□□□□□ -1.73
SWI1	YPL016W	TRS33	Q99394	268 aa		4.22	□□□□□ -1.73
SWI1	YPL016W	MLS1	P30952	554 aa		4.22	□□□□□ -1.73
SWI1	YPL016W	RNT1	Q02555	471 aa		4.22	□□□□□ -1.73
SWI1	YPL016W	DCD1	P06773	312 aa		4.22	□□□□□ -1.73
SWI1	YPL016W	KRS1	P15180	591 aa	Known RBP	4.22	□□□□□ -1.73
SWI1	YPL016W	PDI1	P17967	522 aa	Known RBP	4.22	□□□□□ -1.73
SWI1	YPL016W	PBY1	P38254	753 aa		4.22	□□□□□ -1.73
SWI1	YPL016W	HST2	P53686	357 aa		4.22	□□□□□ -1.73
SWI1	YPL016W	RRB1	Q04225	511 aa	Known RBP	4.22	□□□□□ -1.73
SWI1	YPL016W	MET7	Q08645	548 aa		4.22	□□□□□ -1.73
SWI1	YPL016W	FUS1	P11710	512 aa		4.21	□□□□□ -1.73
SWI1	YPL016W	MUM2	P38236	366 aa		4.21	□□□□□ -1.73
SWI1	YPL016W	ERC1	P38767	581 aa		4.21	□□□□□ -1.73
SWI1	YPL016W	YML119W	Q03208	357 aa		4.21	□□□□□ -1.73
SWI1	YPL016W	CDC27	P38042	758 aa		4.21	□□□□□ -1.74
SWI1	YPL016W	YCK3	P39962	524 aa		4.21	□□□□□ -1.74
SWI1	YPL016W	YIR042C	P40586	236 aa		4.21	□□□□□ -1.74
SWI1	YPL016W	SUM1	P46676	1062 aa		4.21	□□□□□ -1.74
SWI1	YPL016W	MUB1	Q03162	620 aa		4.21	□□□□□ -1.74
SWI1	YPL016W	SWI1	P09547	1314 aa		4.21	□□□□□ -1.74
SWI1	YPL016W	PRP16	P15938	1071 aa	Predicted RBP	4.21	□□□□□ -1.74
SWI1	YPL016W	RPL5	P26321	297 aa	Known RBP	4.21	□□□□□ -1.74
SWI1	YPL016W	STU2	P46675	888 aa		4.21	□□□□□ -1.74
SWI1	YPL016W	PDB1	P32473	366 aa	Known RBP	4.2	□□□□□ -1.74
SWI1	YPL016W	PET112	P33893	541 aa		4.2	□□□□□ -1.74
SWI1	YPL016W	CIC1	P38779	376 aa	Known RBP	4.2	□□□□□ -1.74
SWI1	YPL016W	AIM21	P40563	679 aa		4.2	□□□□□ -1.74
SWI1	YPL016W	KAR9	P32526	644 aa		4.2	□□□□□ -1.74
SWI1	YPL016W	VID28	P40547	921 aa		4.2	□□□□□ -1.74
SWI1	YPL016W	VMS1	Q04311	632 aa	Known RBP	4.2	□□□□□ -1.74
SWI1	YPL016W	HCA4	P20448	770 aa	Known RBP	4.2	□□□□□ -1.74
SWI1	YPL016W	ADY2	P25613	283 aa		4.2	□□□□□ -1.74
SWI1	YPL016W	CDC60	P26637	1090 aa	Known RBP	4.2	□□□□□ -1.74
SWI1	YPL016W	SEC6	P32844	805 aa		4.19	□□□□□ -1.74
SWI1	YPL016W	TEL2	P53038	688 aa		4.19	□□□□□ -1.74
SWI1	YPL016W	RRP9	Q06506	573 aa	Known RBP	4.19	□□□□□ -1.74
SWI1	YPL016W	DLD1	P32891	587 aa		4.19	□□□□□ -1.74
SWI1	YPL016W	TCD1	P38756	429 aa		4.19	□□□□□ -1.74
SWI1	YPL016W	MPT5	P39016	859 aa	Known RBP RIP-Chip data	4.19	□□□□□ -1.74	not detected
SWI1	YPL016W	NOP15	P53927	220 aa	Predicted RBP	4.19	□□□□□ -1.74
SWI1	YPL016W	MCM16	Q12262	181 aa		4.19	□□□□□ -1.74
SWI1	YPL016W	RMP1	Q12530	201 aa		4.19	□□□□□ -1.74
SWI1	YPL016W	ATE1	P16639	503 aa		4.19	□□□□□ -1.74
SWI1	YPL016W	PTH2	P34222	208 aa		4.19	□□□□□ -1.74
SWI1	YPL016W	ESL2	P36168	1195 aa		4.19	□□□□□ -1.74
SWI1	YPL016W	MRPL10	P36520	322 aa		4.19	□□□□□ -1.74
SWI1	YPL016W	GYP7	P48365	746 aa		4.19	□□□□□ -1.74
SWI1	YPL016W	BNI4	P53858	892 aa		4.19	□□□□□ -1.74
SWI1	YPL016W	COG4	Q06096	861 aa		4.19	□□□□□ -1.74
SWI1	YPL016W	ARR1	Q06596	294 aa		4.19	□□□□□ -1.74
SWI1	YPL016W	YPR172W	Q06608	200 aa		4.19	□□□□□ -1.74
SWI1	YPL016W	ADH4	P10127	382 aa		4.18	□□□□□ -1.74
SWI1	YPL016W	ARG1	P22768	420 aa		4.18	□□□□□ -1.74
SWI1	YPL016W	TAF1	P46677	1066 aa		4.18	□□□□□ -1.74
SWI1	YPL016W	PUS2	P53167	370 aa		4.18	□□□□□ -1.74
SWI1	YPL016W	UTP22	P53254	1237 aa	Predicted RBP	4.18	□□□□□ -1.74
SWI1	YPL016W	NOP7	P53261	605 aa	Known RBP	4.18	□□□□□ -1.74
SWI1	YPL016W	TRS120	Q04183	1289 aa		4.18	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 34.4 ms