RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W TFA2P36145 328 aa5.97□□□□□ -1.45
UPF3YGR072W POL5P39985 1022 aaKnown RBP5.97□□□□□ -1.45
UPF3YGR072W GUP1P53154 560 aa5.97□□□□□ -1.45
UPF3YGR072W BIO5P53744 561 aaKnown RBP5.97□□□□□ -1.45
UPF3YGR072W MSN1P22148 382 aa5.96□□□□□ -1.46
UPF3YGR072W MAE1P36013 669 aaKnown RBP5.96□□□□□ -1.46
UPF3YGR072W EMG1Q06287 252 aaKnown RBP5.95□□□□□ -1.46
UPF3YGR072W SOG2Q08817 791 aa5.95□□□□□ -1.46
UPF3YGR072W GCD1P09032 578 aaPredicted RBP5.94□□□□□ -1.46
UPF3YGR072W POL12P38121 705 aaPredicted RBP5.94□□□□□ -1.46
UPF3YGR072W UBX7P38349 436 aa5.94□□□□□ -1.46
UPF3YGR072W LEM3P42838 414 aa5.94□□□□□ -1.46
UPF3YGR072W ALD3P54114 506 aa5.94□□□□□ -1.46
UPF3YGR072W YCR015CP25616 317 aa5.92□□□□□ -1.46
UPF3YGR072W ISC10P32645 267 aa5.92□□□□□ -1.46
UPF3YGR072W NIT1P40447 199 aa5.92□□□□□ -1.46
UPF3YGR072W ELG1Q12050 791 aa5.92□□□□□ -1.46
UPF3YGR072W SPO71Q03868 1245 aa5.91□□□□□ -1.46
UPF3YGR072W GIC2Q06648 383 aa5.91□□□□□ -1.46
UPF3YGR072W DFG16Q99234 619 aa5.91□□□□□ -1.46
UPF3YGR072W ERS1P17261 260 aa5.9□□□□□ -1.46
UPF3YGR072W YKL222CP35995 705 aa5.9□□□□□ -1.46
UPF3YGR072W ALD4P46367 519 aaKnown RBP5.9□□□□□ -1.46
UPF3YGR072W ECL1P48235 211 aa5.9□□□□□ -1.46
UPF3YGR072W CPS1P27614 576 aa5.89□□□□□ -1.47
UPF3YGR072W KIP3P53086 805 aaKnown RBP5.89□□□□□ -1.47
UPF3YGR072W FUS1P11710 512 aa5.88□□□□□ -1.47
UPF3YGR072W GAS1P22146 559 aaKnown RBP5.87□□□□□ -1.47
UPF3YGR072W PUP1P25043 261 aa5.87□□□□□ -1.47
UPF3YGR072W BOI1P38041 980 aaKnown RBP5.87□□□□□ -1.47
UPF3YGR072W NEO1P40527 1151 aa5.87□□□□□ -1.47
UPF3YGR072W AIM46P38885 310 aa5.86□□□□□ -1.47
UPF3YGR072W PUF6Q04373 656 aaKnown RBP5.86□□□□□ -1.47
UPF3YGR072W YHL008CP38750 627 aa5.85□□□□□ -1.47
UPF3YGR072W YNR065CP53751 1116 aa5.85□□□□□ -1.47
UPF3YGR072W DMA2P53924 522 aa5.85□□□□□ -1.47
UPF3YGR072W PUN1Q06991 263 aa5.85□□□□□ -1.47
UPF3YGR072W ESC8Q08119 714 aa5.85□□□□□ -1.47
UPF3YGR072W FIR1P40020 876 aa5.84□□□□□ -1.47
UPF3YGR072W HXT8P40886 569 aa5.84□□□□□ -1.47
UPF3YGR072W RGD2P43556 714 aa5.84□□□□□ -1.47
UPF3YGR072W TAF1P46677 1066 aa5.84□□□□□ -1.47
UPF3YGR072W YJR124CP47159 448 aa5.84□□□□□ -1.47
UPF3YGR072W PRP43P53131 767 aaKnown RBP5.84□□□□□ -1.47
UPF3YGR072W HAS1Q03532 505 aaKnown RBP5.84□□□□□ -1.47
UPF3YGR072W WHI3P34761 661 aaKnown RBP5.83□□□□□ -1.48
UPF3YGR072W YBR287WP38355 427 aa5.83□□□□□ -1.48
UPF3YGR072W MMM1P41800 426 aa5.82□□□□□ -1.48
UPF3YGR072W HVG1P0CE11 249 aa5.81□□□□□ -1.48
UPF3YGR072W SRS2P12954 1174 aa5.81□□□□□ -1.48
UPF3YGR072W CDA2Q06703 312 aa5.81□□□□□ -1.48
UPF3YGR072W HSP78P33416 811 aa5.79□□□□□ -1.48
UPF3YGR072W KTR2P33550 425 aa5.79□□□□□ -1.48
UPF3YGR072W TSA1P34760 196 aaKnown RBP5.79□□□□□ -1.48
UPF3YGR072W CIT3P43635 486 aa5.79□□□□□ -1.48
UPF3YGR072W FAR11P53917 953 aa5.79□□□□□ -1.48
UPF3YGR072W GLO4Q12320 285 aa5.79□□□□□ -1.48
UPF3YGR072W GPT2P36148 743 aa5.78□□□□□ -1.48
UPF3YGR072W GIP4P39732 760 aa5.78□□□□□ -1.48
UPF3YGR072W CWC15Q03772 175 aaKnown RBP5.78□□□□□ -1.48
UPF3YGR072W NSI1Q12457 570 aa5.78□□□□□ -1.48
UPF3YGR072W YOR223WQ12015 292 aa5.77□□□□□ -1.49
UPF3YGR072W THI80P35202 319 aa5.76□□□□□ -1.49
UPF3YGR072W NTA1P40354 457 aa5.76□□□□□ -1.49
UPF3YGR072W SUT1P53032 299 aaKnown RBP5.76□□□□□ -1.49
UPF3YGR072W RCM1P53972 490 aa5.76□□□□□ -1.49
UPF3YGR072W YML083CQ04526 418 aa5.76□□□□□ -1.49
UPF3YGR072W YMR074CQ04773 145 aa5.76□□□□□ -1.49
UPF3YGR072W FET4P40988 552 aa5.75□□□□□ -1.49
UPF3YGR072W APC11Q12157 165 aa5.75□□□□□ -1.49
UPF3YGR072W TIF6Q12522 245 aaKnown RBP5.75□□□□□ -1.49
UPF3YGR072W PNP1Q05788 311 aa5.74□□□□□ -1.49
UPF3YGR072W SSA4P22202 642 aaKnown RBP5.73□□□□□ -1.49
UPF3YGR072W RRN6P32786 894 aa5.73□□□□□ -1.49
UPF3YGR072W OYE3P41816 400 aaPredicted RBP5.73□□□□□ -1.49
UPF3YGR072W NOB1Q08444 459 aaKnown RBP5.73□□□□□ -1.49
UPF3YGR072W PYC2P32327 1180 aaKnown RBP5.72□□□□□ -1.49
UPF3YGR072W RAD55P38953 406 aa5.72□□□□□ -1.49
UPF3YGR072W DOT1Q04089 582 aaKnown RBP5.72□□□□□ -1.49
UPF3YGR072W YOR059CQ08448 450 aaKnown RBP5.72□□□□□ -1.49
UPF3YGR072W RPB10P22139 70 aa5.71□□□□□ -1.5
UPF3YGR072W PSY2P40164 858 aa5.7□□□□□ -1.5
UPF3YGR072W RLF2Q12495 606 aa5.7□□□□□ -1.5
UPF3YGR072W IRS4P36115 615 aaKnown RBP5.69□□□□□ -1.5
UPF3YGR072W LSO1Q3E827 93 aa5.69□□□□□ -1.5
UPF3YGR072W ADP1P25371 1049 aa5.68□□□□□ -1.5
UPF3YGR072W FLR1P38124 548 aa5.68□□□□□ -1.5
UPF3YGR072W GIS1Q03833 894 aa5.68□□□□□ -1.5
UPF3YGR072W RPS4AP0CX35 261 aaKnown RBP5.67□□□□□ -1.5
UPF3YGR072W RPS4BP0CX36 261 aaKnown RBP5.67□□□□□ -1.5
UPF3YGR072W PRP6P19735 899 aaPredicted RBP5.67□□□□□ -1.5
UPF3YGR072W SMC1P32908 1225 aa5.67□□□□□ -1.5
UPF3YGR072W ORC3P54790 616 aa5.66□□□□□ -1.5
UPF3YGR072W EAR1Q03212 550 aa5.66□□□□□ -1.5
UPF3YGR072W SSY1Q03770 852 aa5.66□□□□□ -1.5
UPF3YGR072W HDA2Q06629 674 aa5.66□□□□□ -1.5
UPF3YGR072W YLL054CQ12244 843 aa5.65□□□□□ -1.5
UPF3YGR072W FUR4P05316 633 aaKnown RBP5.64□□□□□ -1.51
UPF3YGR072W GCV1P48015 400 aa5.64□□□□□ -1.51
UPF3YGR072W MSH6Q03834 1242 aa5.64□□□□□ -1.51
Retrieved 100 of 5,963 RNA–protein pairs in 57.8 ms