RNA–Protein interactions for RNA: YDL231C

BRE4, Transcript of Zinc finger protein containing five transmembrane domains, yeast

Gene BRE4, Length 3,378 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
BRE4	YDL231C	RRP43	P25359	394 aa	Predicted RBP	4.8	□□□□□ -1.64
BRE4	YDL231C	CDC15	P27636	974 aa		4.8	□□□□□ -1.64
BRE4	YDL231C	AFG2	P32794	780 aa		4.8	□□□□□ -1.64
BRE4	YDL231C	BDF1	P35817	686 aa		4.8	□□□□□ -1.64
BRE4	YDL231C	CDC27	P38042	758 aa		4.8	□□□□□ -1.64
BRE4	YDL231C	AKR1	P39010	764 aa		4.8	□□□□□ -1.64
BRE4	YDL231C	ICP55	P40051	511 aa		4.8	□□□□□ -1.64
BRE4	YDL231C	EST2	Q06163	884 aa		4.8	□□□□□ -1.64
BRE4	YDL231C	PEX19	Q07418	342 aa		4.8	□□□□□ -1.64
BRE4	YDL231C	HXK1	P04806	485 aa	Known RBP	4.79	□□□□□ -1.64
BRE4	YDL231C	RIT1	P23796	513 aa		4.79	□□□□□ -1.64
BRE4	YDL231C	RDS1	P25611	832 aa		4.79	□□□□□ -1.64
BRE4	YDL231C	SPT8	P38915	602 aa		4.79	□□□□□ -1.64
BRE4	YDL231C	PTK2	P47116	818 aa	Known RBP	4.79	□□□□□ -1.64
BRE4	YDL231C	MTC5	Q03897	1148 aa		4.79	□□□□□ -1.64
BRE4	YDL231C	YLH47	Q06493	454 aa		4.79	□□□□□ -1.64
BRE4	YDL231C	RPS7A	P26786	190 aa	Known RBP	4.79	□□□□□ -1.64
BRE4	YDL231C	BRL1	P38770	471 aa		4.79	□□□□□ -1.64
BRE4	YDL231C	MSH4	P40965	878 aa	Predicted RBP	4.79	□□□□□ -1.64
BRE4	YDL231C	TRM44	Q02648	567 aa	Known RBP	4.79	□□□□□ -1.64
BRE4	YDL231C	TUF1	P02992	437 aa	Known RBP	4.79	□□□□□ -1.64
BRE4	YDL231C	COQ1	P18900	473 aa		4.79	□□□□□ -1.64
BRE4	YDL231C	RER2	P35196	286 aa		4.79	□□□□□ -1.64
BRE4	YDL231C	HAL5	P38970	855 aa	Known RBP	4.79	□□□□□ -1.64
BRE4	YDL231C	HGH1	P48362	394 aa	Known RBP	4.79	□□□□□ -1.64
BRE4	YDL231C	VPS4	P52917	437 aa		4.79	□□□□□ -1.64
BRE4	YDL231C	SSL2	Q00578	843 aa		4.79	□□□□□ -1.64
BRE4	YDL231C	TLG2	Q08144	397 aa		4.79	□□□□□ -1.64
BRE4	YDL231C	YPL216W	Q08964	1102 aa		4.79	□□□□□ -1.64
BRE4	YDL231C	LYS2	P07702	1392 aa		4.79	□□□□□ -1.64
BRE4	YDL231C	RET1	P22276	1149 aa	Known RBP	4.78	□□□□□ -1.64
BRE4	YDL231C	EPS1	P40557	701 aa		4.78	□□□□□ -1.64
BRE4	YDL231C	PUS6	P53294	404 aa		4.78	□□□□□ -1.64
BRE4	YDL231C	LCD1	Q04377	747 aa		4.78	□□□□□ -1.64
BRE4	YDL231C	HRQ1	Q05549	1077 aa		4.78	□□□□□ -1.64
BRE4	YDL231C	YKU70	P32807	602 aa		4.78	□□□□□ -1.64
BRE4	YDL231C	TTI1	P36097	1038 aa		4.78	□□□□□ -1.64
BRE4	YDL231C	RPN10	P38886	268 aa	Known RBP	4.78	□□□□□ -1.64
BRE4	YDL231C	SYF1	Q04048	859 aa	Predicted RBP	4.78	□□□□□ -1.64
BRE4	YDL231C	YPL260W	Q08977	551 aa		4.78	□□□□□ -1.64
BRE4	YDL231C	GIN4	Q12263	1142 aa		4.78	□□□□□ -1.64
BRE4	YDL231C	STI1	P15705	589 aa	Known RBP RIP-Chip data	4.78	□□□□□ -1.65	not detected
BRE4	YDL231C	YER130C	P39959	443 aa		4.78	□□□□□ -1.65
BRE4	YDL231C	CCT5	P40413	562 aa	Known RBP	4.78	□□□□□ -1.65
BRE4	YDL231C	CTH1	P47976	325 aa		4.78	□□□□□ -1.65
BRE4	YDL231C	KEL3	Q08979	651 aa	Predicted RBP	4.78	□□□□□ -1.65
BRE4	YDL231C	HAA1	Q12753	694 aa	Known RBP	4.78	□□□□□ -1.65
BRE4	YDL231C	GAP1	P19145	602 aa	Predicted RBP	4.77	□□□□□ -1.65
BRE4	YDL231C	MSH3	P25336	1018 aa		4.77	□□□□□ -1.65
BRE4	YDL231C	KRE2	P27809	442 aa		4.77	□□□□□ -1.65
BRE4	YDL231C	MNR2	P35724	969 aa		4.77	□□□□□ -1.65
BRE4	YDL231C	SPL2	P38839	148 aa		4.77	□□□□□ -1.65
BRE4	YDL231C	NUG1	P40010	520 aa	Known RBP	4.77	□□□□□ -1.65
BRE4	YDL231C	VID27	P40157	782 aa		4.77	□□□□□ -1.65
BRE4	YDL231C	YFH7	P43591	353 aa		4.77	□□□□□ -1.65
BRE4	YDL231C	RPN12	P32496	274 aa		4.77	□□□□□ -1.65
BRE4	YDL231C	SET4	P42948	560 aa		4.77	□□□□□ -1.65
BRE4	YDL231C	TPO2	P53283	614 aa		4.77	□□□□□ -1.65
BRE4	YDL231C	TIM50	Q02776	476 aa		4.77	□□□□□ -1.65
BRE4	YDL231C	ESC2	Q06340	456 aa		4.77	□□□□□ -1.65
BRE4	YDL231C	GAS5	Q08193	484 aa		4.77	□□□□□ -1.65
BRE4	YDL231C	OXR1	Q08952	273 aa		4.77	□□□□□ -1.65
BRE4	YDL231C	SSF2	Q12153	453 aa	Predicted RBP	4.77	□□□□□ -1.65
BRE4	YDL231C	PIF1	P07271	859 aa		4.76	□□□□□ -1.65
BRE4	YDL231C	KNS1	P32350	737 aa	Predicted RBP	4.76	□□□□□ -1.65
BRE4	YDL231C	SLI15	P38283	698 aa		4.76	□□□□□ -1.65
BRE4	YDL231C	ORC6	P38826	435 aa		4.76	□□□□□ -1.65
BRE4	YDL231C	YIR014W	P40570	242 aa		4.76	□□□□□ -1.65
BRE4	YDL231C	UTP22	P53254	1237 aa	Predicted RBP	4.76	□□□□□ -1.65
BRE4	YDL231C	HST1	P53685	503 aa		4.76	□□□□□ -1.65
BRE4	YDL231C	ELG1	Q12050	791 aa		4.76	□□□□□ -1.65
BRE4	YDL231C	TAH18	Q12181	623 aa		4.76	□□□□□ -1.65
BRE4	YDL231C	FRS2	P15625	503 aa	Known RBP	4.76	□□□□□ -1.65
BRE4	YDL231C	MCM2	P29469	868 aa		4.76	□□□□□ -1.65
BRE4	YDL231C	FBP26	P32604	452 aa		4.76	□□□□□ -1.65
BRE4	YDL231C	SET1	P38827	1080 aa	Known RBP	4.76	□□□□□ -1.65
BRE4	YDL231C	AIM9	P40053	627 aa	Known RBP	4.76	□□□□□ -1.65
BRE4	YDL231C	SDA1	P53313	767 aa	Known RBP	4.76	□□□□□ -1.65
BRE4	YDL231C	SPN1	Q06505	410 aa	Predicted RBP	4.76	□□□□□ -1.65
BRE4	YDL231C	DIB1	Q06819	143 aa	Predicted RBP	4.76	□□□□□ -1.65
BRE4	YDL231C	YOR111W	Q99210	232 aa		4.76	□□□□□ -1.65
BRE4	YDL231C	YCK3	P39962	524 aa		4.76	□□□□□ -1.65
BRE4	YDL231C	YER156C	P40093	338 aa	Known RBP	4.76	□□□□□ -1.65
BRE4	YDL231C	FYV10	P40492	516 aa		4.76	□□□□□ -1.65
BRE4	YDL231C	CIT1	P00890	479 aa		4.75	□□□□□ -1.65
BRE4	YDL231C	DIT2	P21595	489 aa		4.75	□□□□□ -1.65
BRE4	YDL231C	MAL33	P38157	468 aa		4.75	□□□□□ -1.65
BRE4	YDL231C	RRM3	P38766	723 aa		4.75	□□□□□ -1.65
BRE4	YDL231C	TFC6	Q06339	672 aa		4.75	□□□□□ -1.65
BRE4	YDL231C	PPM2	Q08282	695 aa		4.75	□□□□□ -1.65
BRE4	YDL231C	RPL8B	P29453	256 aa	Known RBP	4.75	□□□□□ -1.65
BRE4	YDL231C	OSH3	P38713	996 aa	Known RBP	4.75	□□□□□ -1.65
BRE4	YDL231C	PRP42	Q03776	544 aa	Known RBP	4.75	□□□□□ -1.65
BRE4	YDL231C	GPA1	P08539	472 aa		4.74	□□□□□ -1.65
BRE4	YDL231C	VPS1	P21576	704 aa	Known RBP	4.74	□□□□□ -1.65
BRE4	YDL231C	MRPL10	P36520	322 aa		4.74	□□□□□ -1.65
BRE4	YDL231C	YBL028C	P38202	106 aa		4.74	□□□□□ -1.65
BRE4	YDL231C	CIR1	P42940	261 aa		4.74	□□□□□ -1.65
BRE4	YDL231C	YJR008W	P47085	338 aa		4.74	□□□□□ -1.65
BRE4	YDL231C	RPS15	Q01855	142 aa	Known RBP	4.74	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 48.2 ms