RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 HSP90AA1P07900 732 aaKnown RBP23.14■■□□□ 1.29
UPF1-210ENST00000600689 GLI2P10070 1586 aa23.14■■□□□ 1.29
UPF1-210ENST00000600689 DZIP1LQ8IYY4 767 aaKnown RBP23.14■■□□□ 1.29
UPF1-210ENST00000600689 MYO5BQ9ULV0 1848 aa23.14■■□□□ 1.29
UPF1-210ENST00000600689 ZC3H13Q5T200 1668 aaKnown RBP23.13■■□□□ 1.29
UPF1-210ENST00000600689 MVPQ14764 893 aaKnown RBP23.13■■□□□ 1.29
UPF1-210ENST00000600689 LNPKQ9C0E8 428 aa23.12■■□□□ 1.29
UPF1-210ENST00000600689 ARHGAP31Q2M1Z3 1444 aa23.12■■□□□ 1.29
UPF1-210ENST00000600689 ZKSCAN2Q63HK3 967 aa23.12■■□□□ 1.29
UPF1-210ENST00000600689 FSD2A1L4K1 749 aa23.12■■□□□ 1.29
UPF1-210ENST00000600689 GRPEL1Q9HAV7 217 aa23.12■■□□□ 1.29
UPF1-210ENST00000600689 CABP2Q9NPB3 220 aa23.12■■□□□ 1.29
UPF1-210ENST00000600689 EXOSC9Q06265 439 aaKnown RBP23.11■■□□□ 1.29
UPF1-210ENST00000600689 HSP90AA2PQ14568 343 aaPredicted RBP23.11■■□□□ 1.29
UPF1-210ENST00000600689 SLC52A1Q9NWF4 448 aa23.1■■□□□ 1.29
UPF1-210ENST00000600689 HSP90AB1P08238 724 aaKnown RBP23.1■■□□□ 1.29
UPF1-210ENST00000600689 TRIM44Q96DX7 344 aaPredicted RBP23.1■■□□□ 1.29
UPF1-210ENST00000600689 ERBB4Q15303 1308 aa23.08■■□□□ 1.29
UPF1-210ENST00000600689 DIP2BQ9P265 1576 aa23.08■■□□□ 1.29
UPF1-210ENST00000600689 MLECQ14165 292 aa23.08■■□□□ 1.29
UPF1-210ENST00000600689 PREX1Q8TCU6 1659 aa23.07■■□□□ 1.28
UPF1-210ENST00000600689 MRE11P49959 708 aa23.07■■□□□ 1.28
UPF1-210ENST00000600689 ARHGEF28Q8N1W1 1705 aaKnown RBP23.07■■□□□ 1.28
UPF1-210ENST00000600689 CLCN1P35523 988 aa23.07■■□□□ 1.28
UPF1-210ENST00000600689 TRIM27P14373 513 aa23.06■■□□□ 1.28
UPF1-210ENST00000600689 GAS2L3Q86XJ1 694 aa23.06■■□□□ 1.28
UPF1-210ENST00000600689 TULP4Q9NRJ4 1543 aa23.06■■□□□ 1.28
UPF1-210ENST00000600689 CFAP53Q96M91 514 aa23.05■■□□□ 1.28
UPF1-210ENST00000600689 EVC2Q86UK5 1308 aa23.05■■□□□ 1.28
UPF1-210ENST00000600689 NINLQ9Y2I6 1382 aa23.05■■□□□ 1.28
UPF1-210ENST00000600689 ESPNB1AK53 854 aa23.05■■□□□ 1.28
UPF1-210ENST00000600689 SSH1Q8WYL5 1049 aa23.05■■□□□ 1.28
UPF1-210ENST00000600689 TNPO1Q92973 898 aaKnown RBP23.04■■□□□ 1.28
UPF1-210ENST00000600689 NOB1Q9ULX3 412 aaKnown RBP23.04■■□□□ 1.28
UPF1-210ENST00000600689 TMEM131LA2VDJ0 1609 aa23.04■■□□□ 1.28
UPF1-210ENST00000600689 GLIPR1L2Q4G1C9 344 aa23.02■■□□□ 1.28
UPF1-210ENST00000600689 WDR63Q8IWG1 891 aa23.02■■□□□ 1.28
UPF1-210ENST00000600689 TMEM57Q8N5G2 664 aa23.02■■□□□ 1.28
UPF1-210ENST00000600689 RBM42Q9BTD8 480 aaKnown RBP23.02■■□□□ 1.28
UPF1-210ENST00000600689 C1orf115Q9H7X2 142 aa23.02■■□□□ 1.28
UPF1-210ENST00000600689 STAG3Q9UJ98 1225 aa23.02■■□□□ 1.28
UPF1-210ENST00000600689 NGEFQ8N5V2 710 aa23.02■■□□□ 1.28
UPF1-210ENST00000600689 POLR3AO14802 1390 aaPredicted RBP23.01■■□□□ 1.27
UPF1-210ENST00000600689 MINK1Q8N4C8 1332 aaPredicted RBP23.01■■□□□ 1.27
UPF1-210ENST00000600689 PKNOX2Q96KN3 472 aa23.01■■□□□ 1.27
UPF1-210ENST00000600689 SRPK2P78362 688 aaKnown RBP23.01■■□□□ 1.27
UPF1-210ENST00000600689 DDX11L8A8MPP1 907 aa23■■□□□ 1.27
UPF1-210ENST00000600689 PRAM1Q96QH2 718 aa23■■□□□ 1.27
UPF1-210ENST00000600689 CD2BP2O95400 341 aaKnown RBP22.98■■□□□ 1.27
UPF1-210ENST00000600689 NCLP19338 710 aaKnown RBP22.98■■□□□ 1.27
UPF1-210ENST00000600689 ZMYND15Q9H091 742 aa22.98■■□□□ 1.27
UPF1-210ENST00000600689 ZFYVE9O95405 1425 aa22.97■■□□□ 1.27
UPF1-210ENST00000600689 ANKRD45Q5TZF3 282 aa22.96■■□□□ 1.27
UPF1-210ENST00000600689 ZNF692Q9BU19 519 aaPredicted RBP22.96■■□□□ 1.27
UPF1-210ENST00000600689 ELL2O00472 640 aaPredicted RBP22.96■■□□□ 1.27
UPF1-210ENST00000600689 GGNBP2Q9H3C7 697 aa22.96■■□□□ 1.27
UPF1-210ENST00000600689 ATF7IPQ6VMQ6 1270 aa22.95■■□□□ 1.27
UPF1-210ENST00000600689 ANKRD36BQ8N2N9 1353 aa22.95■■□□□ 1.27
UPF1-210ENST00000600689 VIRMAQ69YN4 1812 aaKnown RBP22.95■■□□□ 1.26
UPF1-210ENST00000600689 ARID3AQ99856 593 aa22.95■■□□□ 1.26
UPF1-210ENST00000600689 DDX19BQ9UMR2 479 aa22.95■■□□□ 1.26
UPF1-210ENST00000600689 SHPRHQ149N8 1683 aa22.94■■□□□ 1.26
UPF1-210ENST00000600689 PTPRMP28827 1452 aa22.93■■□□□ 1.26
UPF1-210ENST00000600689 A0A1W2PP64 1363 aa22.93■■□□□ 1.26
UPF1-210ENST00000600689 CLTCQ00610 1675 aaKnown RBP22.93■■□□□ 1.26
UPF1-210ENST00000600689 SSFA2P28290 1259 aa22.93■■□□□ 1.26
UPF1-210ENST00000600689 YTHDC2Q9H6S0 1430 aaKnown RBP22.93■■□□□ 1.26
UPF1-210ENST00000600689 GBP4Q96PP9 640 aa22.92■■□□□ 1.26
UPF1-210ENST00000600689 ZBTB7CA1YPR0 619 aa22.91■■□□□ 1.26
UPF1-210ENST00000600689 AAMPQ13685 434 aa22.91■■□□□ 1.26
UPF1-210ENST00000600689 PHF23Q9BUL5 403 aaPredicted RBP22.91■■□□□ 1.26
UPF1-210ENST00000600689 RIPK4P57078 832 aa22.9■■□□□ 1.26
UPF1-210ENST00000600689 ALKQ9UM73 1620 aa22.89■■□□□ 1.25
UPF1-210ENST00000600689 FBLN1P23142 703 aa22.89■■□□□ 1.25
UPF1-210ENST00000600689 TMPOP42166 694 aaKnown RBP22.89■■□□□ 1.25
UPF1-210ENST00000600689 WAPLQ7Z5K2 1190 aa22.89■■□□□ 1.25
UPF1-210ENST00000600689 PUS7Q96PZ0 661 aaKnown RBP22.89■■□□□ 1.25
UPF1-210ENST00000600689 DDX49Q9Y6V7 483 aaKnown RBP22.88■■□□□ 1.25
UPF1-210ENST00000600689 RBM10P98175 930 aaKnown RBP22.88■■□□□ 1.25
UPF1-210ENST00000600689 HDAC1Q13547 482 aaPredicted RBP22.88■■□□□ 1.25
UPF1-210ENST00000600689 CHD1LQ86WJ1 897 aa22.88■■□□□ 1.25
UPF1-210ENST00000600689 USP32Q8NFA0 1604 aa22.87■■□□□ 1.25
UPF1-210ENST00000600689 SMC5Q8IY18 1101 aa22.87■■□□□ 1.25
UPF1-210ENST00000600689 THUMPD2Q9BTF0 503 aaKnown RBP22.87■■□□□ 1.25
UPF1-210ENST00000600689 GAS2L2Q8NHY3 880 aa22.86■■□□□ 1.25
UPF1-210ENST00000600689 CDK19Q9BWU1 502 aa22.86■■□□□ 1.25
UPF1-210ENST00000600689 ZBTB40Q9NUA8 1239 aa22.85■■□□□ 1.25
UPF1-210ENST00000600689 TRIM35Q9UPQ4 493 aa22.85■■□□□ 1.25
UPF1-210ENST00000600689 APBB1O00213 710 aa22.85■■□□□ 1.25
UPF1-210ENST00000600689 RRP9O43818 475 aaKnown RBP22.85■■□□□ 1.25
UPF1-210ENST00000600689 KIAA1211Q6ZU35 1233 aa22.85■■□□□ 1.25
UPF1-210ENST00000600689 NASPP49321 788 aaPredicted RBP22.84■■□□□ 1.25
UPF1-210ENST00000600689 FOXD4L5Q5VV16 416 aaPredicted RBP22.84■■□□□ 1.25
UPF1-210ENST00000600689 FOXD4L4Q8WXT5 416 aaPredicted RBP22.84■■□□□ 1.25
UPF1-210ENST00000600689 A2ML1A8K2U0 1454 aa22.84■■□□□ 1.25
UPF1-210ENST00000600689 CABP1Q9NZU7 370 aa22.84■■□□□ 1.25
UPF1-210ENST00000600689 AGLP35573 1532 aa22.83■■□□□ 1.25
UPF1-210ENST00000600689 ABCC11Q96J66 1382 aa22.83■■□□□ 1.25
UPF1-210ENST00000600689 FYB1O15117 783 aa22.83■■□□□ 1.25
UPF1-210ENST00000600689 NUCB1Q02818 461 aa22.83■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms