RNA–Protein interactions for RNA: ENST00000589349.5

DNMT1-219, Transcript of DNA methyltransferase 1, humanhuman

TSL 4

Gene DNMT1, Length 603 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-219ENST00000589349 MYO5CQ9NQX4 1742 aa12.96□□□□□ -0.33
DNMT1-219ENST00000589349 MDM2Q00987 491 aaPredicted RBP12.95□□□□□ -0.34
DNMT1-219ENST00000589349 AMHR2Q16671 573 aa12.95□□□□□ -0.34
DNMT1-219ENST00000589349 CFDP1Q9UEE9 299 aaPredicted RBP12.95□□□□□ -0.34
DNMT1-219ENST00000589349 POGZQ7Z3K3 1410 aa12.95□□□□□ -0.34
DNMT1-219ENST00000589349 ZFYVE16Q7Z3T8 1539 aa12.94□□□□□ -0.34
DNMT1-219ENST00000589349 TRIM66O15016 1216 aa12.94□□□□□ -0.34
DNMT1-219ENST00000589349 PRR14Q9BWN1 585 aa12.94□□□□□ -0.34
DNMT1-219ENST00000589349 ESF1Q9H501 851 aaKnown RBP12.94□□□□□ -0.34
DNMT1-219ENST00000589349 GPCPD1Q9NPB8 672 aa12.94□□□□□ -0.34
DNMT1-219ENST00000589349 YEATS2Q9ULM3 1422 aa12.94□□□□□ -0.34
DNMT1-219ENST00000589349 FRMPD1Q5SYB0 1578 aa12.94□□□□□ -0.34
DNMT1-219ENST00000589349 CCNB3Q8WWL7 1395 aa12.94□□□□□ -0.34
DNMT1-219ENST00000589349 LRRIQ1Q96JM4 1722 aa12.93□□□□□ -0.34
DNMT1-219ENST00000589349 HNRNPMP52272 730 aaKnown RBP eCLIP12.92□□□□□ -0.34
DNMT1-219ENST00000589349 TTLL12Q14166 644 aaPredicted RBP12.92□□□□□ -0.34
DNMT1-219ENST00000589349 RICTORQ6R327 1708 aa12.91□□□□□ -0.34
DNMT1-219ENST00000589349 DDX11L8A8MPP1 907 aa12.91□□□□□ -0.34
DNMT1-219ENST00000589349 ARHGEF40Q8TER5 1519 aa12.9□□□□□ -0.34
DNMT1-219ENST00000589349 RDH13Q8NBN7 331 aa12.9□□□□□ -0.34
DNMT1-219ENST00000589349 ZNF518AQ6AHZ1 1483 aa12.9□□□□□ -0.34
DNMT1-219ENST00000589349 MAGI2Q86UL8 1455 aa12.9□□□□□ -0.34
DNMT1-219ENST00000589349 KMT5BQ4FZB7 885 aa12.89□□□□□ -0.35
DNMT1-219ENST00000589349 SLC10A3P09131 477 aa12.88□□□□□ -0.35
DNMT1-219ENST00000589349 TMUB1Q9BVT8 246 aa12.88□□□□□ -0.35
DNMT1-219ENST00000589349 ATP10AO60312 1499 aa12.88□□□□□ -0.35
DNMT1-219ENST00000589349 PTPRMP28827 1452 aa12.88□□□□□ -0.35
DNMT1-219ENST00000589349 SPAG9O60271 1321 aaKnown RBP12.88□□□□□ -0.35
DNMT1-219ENST00000589349 CFHP08603 1231 aa12.87□□□□□ -0.35
DNMT1-219ENST00000589349 ZMYM4Q5VZL5 1548 aa12.87□□□□□ -0.35
DNMT1-219ENST00000589349 C9orf84Q5VXU9 1444 aa12.87□□□□□ -0.35
DNMT1-219ENST00000589349 TRAPPC8Q9Y2L5 1435 aa12.87□□□□□ -0.35
DNMT1-219ENST00000589349 PDE4DQ08499 809 aa12.86□□□□□ -0.35
DNMT1-219ENST00000589349 HECW2Q9P2P5 1572 aa12.86□□□□□ -0.35
DNMT1-219ENST00000589349 CDC42BPBQ9Y5S2 1711 aa12.85□□□□□ -0.35
DNMT1-219ENST00000589349 PREX2Q70Z35 1606 aa12.85□□□□□ -0.35
DNMT1-219ENST00000589349 MADDQ8WXG6 1647 aa12.85□□□□□ -0.35
DNMT1-219ENST00000589349 APLP1P51693 650 aa12.85□□□□□ -0.35
DNMT1-219ENST00000589349 FAM217BQ9NTX9 383 aaPredicted RBP12.85□□□□□ -0.35
DNMT1-219ENST00000589349 BCORL1Q5H9F3 1711 aa12.85□□□□□ -0.35
DNMT1-219ENST00000589349 GPATCH8Q9UKJ3 1502 aaKnown RBP12.84□□□□□ -0.35
DNMT1-219ENST00000589349 CEBPAP49715 358 aaPredicted RBP12.84□□□□□ -0.35
DNMT1-219ENST00000589349 PARP9Q8IXQ6 854 aa12.84□□□□□ -0.35
DNMT1-219ENST00000589349 ZNF644Q9H582 1327 aaPredicted RBP12.84□□□□□ -0.35
DNMT1-219ENST00000589349 ADAMTSL3P82987 1691 aa12.83□□□□□ -0.35
DNMT1-219ENST00000589349 RIMS1Q86UR5 1692 aaKnown RBP12.83□□□□□ -0.35
DNMT1-219ENST00000589349 CD46P15529 392 aa12.83□□□□□ -0.36
DNMT1-219ENST00000589349 GIGYF2Q6Y7W6 1299 aaKnown RBP12.83□□□□□ -0.36
DNMT1-219ENST00000589349 REPIN1Q9BWE0 567 aaKnown RBP12.82□□□□□ -0.36
DNMT1-219ENST00000589349 ABCC1P33527 1531 aa12.82□□□□□ -0.36
DNMT1-219ENST00000589349 ARHGEF12Q9NZN5 1544 aa12.82□□□□□ -0.36
DNMT1-219ENST00000589349 CDC42BPAQ5VT25 1732 aa12.82□□□□□ -0.36
DNMT1-219ENST00000589349 VPS8Q8N3P4 1428 aa12.81□□□□□ -0.36
DNMT1-219ENST00000589349 ACTN4O43707 911 aaKnown RBP12.81□□□□□ -0.36
DNMT1-219ENST00000589349 HSPA2P54652 639 aa12.81□□□□□ -0.36
DNMT1-219ENST00000589349 EHBP1L1Q8N3D4 1523 aa12.81□□□□□ -0.36
DNMT1-219ENST00000589349 SYCP2Q9BX26 1530 aa12.81□□□□□ -0.36
DNMT1-219ENST00000589349 PLEKHH2Q8IVE3 1493 aa12.8□□□□□ -0.36
DNMT1-219ENST00000589349 SSTR3P32745 418 aaPredicted RBP12.8□□□□□ -0.36
DNMT1-219ENST00000589349 GCGRP47871 477 aa12.8□□□□□ -0.36
DNMT1-219ENST00000589349 GGT6Q6P531 493 aa12.8□□□□□ -0.36
DNMT1-219ENST00000589349 LMTK3Q96Q04 1460 aa12.79□□□□□ -0.36
DNMT1-219ENST00000589349 PCDHB3Q9Y5E6 796 aa12.79□□□□□ -0.36
DNMT1-219ENST00000589349 ITSN2Q9NZM3 1697 aa12.79□□□□□ -0.36
DNMT1-219ENST00000589349 MLH3Q9UHC1 1453 aa12.78□□□□□ -0.36
DNMT1-219ENST00000589349 SAMD9LQ8IVG5 1584 aa12.78□□□□□ -0.36
DNMT1-219ENST00000589349 TSPY4P0CV99 314 aa12.78□□□□□ -0.36
DNMT1-219ENST00000589349 TSPY10P0CW01 314 aa12.78□□□□□ -0.36
DNMT1-219ENST00000589349 KDM5CP41229 1560 aa12.77□□□□□ -0.36
DNMT1-219ENST00000589349 KANK4Q5T7N3 995 aaPredicted RBP12.77□□□□□ -0.37
DNMT1-219ENST00000589349 NCOA2Q15596 1464 aa12.77□□□□□ -0.37
DNMT1-219ENST00000589349 FER1L4A9Z1Z3 1794 aa12.76□□□□□ -0.37
DNMT1-219ENST00000589349 SOCS7O14512 581 aa12.76□□□□□ -0.37
DNMT1-219ENST00000589349 ITGBL1O95965 494 aaPredicted RBP12.76□□□□□ -0.37
DNMT1-219ENST00000589349 KIAA1107Q9UPP5 1409 aa12.76□□□□□ -0.37
DNMT1-219ENST00000589349 DIP2CQ9Y2E4 1556 aa12.76□□□□□ -0.37
DNMT1-219ENST00000589349 TIAM1Q13009 1591 aa12.75□□□□□ -0.37
DNMT1-219ENST00000589349 GRIPAP1Q4V328 841 aa12.75□□□□□ -0.37
DNMT1-219ENST00000589349 SUPT6HQ7KZ85 1726 aaKnown RBP12.75□□□□□ -0.37
DNMT1-219ENST00000589349 MTRQ99707 1265 aa12.75□□□□□ -0.37
DNMT1-219ENST00000589349 SIGLEC1Q9BZZ2 1709 aa12.75□□□□□ -0.37
DNMT1-219ENST00000589349 IL21Q9HBE4 155 aa12.75□□□□□ -0.37
DNMT1-219ENST00000589349 PLA2G2EQ9NZK7 142 aa12.75□□□□□ -0.37
DNMT1-219ENST00000589349 ABCA6Q8N139 1617 aa12.74□□□□□ -0.37
DNMT1-219ENST00000589349 PRKCSHP14314 528 aaPredicted RBP12.74□□□□□ -0.37
DNMT1-219ENST00000589349 LRRC9Q6ZRR7 1453 aa12.73□□□□□ -0.37
DNMT1-219ENST00000589349 KDM4AO75164 1064 aa12.73□□□□□ -0.37
DNMT1-219ENST00000589349 USP46P62068 366 aa12.73□□□□□ -0.37
DNMT1-219ENST00000589349 KCNC4Q03721 635 aa12.73□□□□□ -0.37
DNMT1-219ENST00000589349 TJAP1Q5JTD0 557 aa12.73□□□□□ -0.37
DNMT1-219ENST00000589349 NUTM1Q86Y26 1132 aa12.73□□□□□ -0.37
DNMT1-219ENST00000589349 KIF3BO15066 747 aa12.72□□□□□ -0.37
DNMT1-219ENST00000589349 ATP6V1AP38606 617 aa12.72□□□□□ -0.37
DNMT1-219ENST00000589349 FUT2Q10981 343 aa12.72□□□□□ -0.37
DNMT1-219ENST00000589349 FBXO41Q8TF61 875 aa12.72□□□□□ -0.37
DNMT1-219ENST00000589349 ATP7AQ04656 1500 aa12.72□□□□□ -0.37
DNMT1-219ENST00000589349 A2MP01023 1474 aa12.72□□□□□ -0.37
DNMT1-219ENST00000589349 KIDINS220Q9ULH0 1771 aa12.71□□□□□ -0.37
DNMT1-219ENST00000589349 NR1I2O75469 434 aa12.71□□□□□ -0.37
DNMT1-219ENST00000589349 MS4A1P11836 297 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms