RNA–Protein interactions for RNA: ENST00000576222.1

PCDHGB3-201, Transcript of protocadherin gamma subfamily B, 3, humanhuman

TSL 1 (best) BASIC

Gene PCDHGB3, Length 4,727 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGB3-201ENST00000576222 PARD3Q8TEW0 1356 aa15.77■□□□□ 0.12
PCDHGB3-201ENST00000576222 TMPOP42166 694 aaKnown RBP15.77■□□□□ 0.11
PCDHGB3-201ENST00000576222 CCDC112Q8NEF3 446 aa15.77■□□□□ 0.11
PCDHGB3-201ENST00000576222 TSPYL4Q9UJ04 414 aa15.77■□□□□ 0.11
PCDHGB3-201ENST00000576222 TOPBP1Q92547 1522 aa15.77■□□□□ 0.11
PCDHGB3-201ENST00000576222 FBXW7Q969H0 707 aa15.76■□□□□ 0.11
PCDHGB3-201ENST00000576222 SEC24BO95487 1268 aa15.76■□□□□ 0.11
PCDHGB3-201ENST00000576222 MCM5P33992 734 aa15.76■□□□□ 0.11
PCDHGB3-201ENST00000576222 CBX1P83916 185 aa15.76■□□□□ 0.11
PCDHGB3-201ENST00000576222 HSP90AB4PQ58FF6 505 aa15.76■□□□□ 0.11
PCDHGB3-201ENST00000576222 GNAI3P08754 354 aa15.75■□□□□ 0.11
PCDHGB3-201ENST00000576222 NGDNQ8NEJ9 315 aaKnown RBP15.75■□□□□ 0.11
PCDHGB3-201ENST00000576222 C9orf78Q9NZ63 289 aaPredicted RBP15.75■□□□□ 0.11
PCDHGB3-201ENST00000576222 EIF2S2P20042 333 aaKnown RBP15.75■□□□□ 0.11
PCDHGB3-201ENST00000576222 CREBRFQ8IUR6 639 aa15.75■□□□□ 0.11
PCDHGB3-201ENST00000576222 GPRASP1Q5JY77 1395 aa15.75■□□□□ 0.11
PCDHGB3-201ENST00000576222 DYNC1I1O14576 645 aa15.75■□□□□ 0.11
PCDHGB3-201ENST00000576222 PDCP20941 246 aa15.75■□□□□ 0.11
PCDHGB3-201ENST00000576222 DISP3Q9P2K9 1392 aa15.74■□□□□ 0.11
PCDHGB3-201ENST00000576222 HMGXB3Q12766 1538 aa15.74■□□□□ 0.11
PCDHGB3-201ENST00000576222 TRIM27P14373 513 aa15.74■□□□□ 0.11
PCDHGB3-201ENST00000576222 BIVM-ERCC5R4GMW8 1640 aa15.74■□□□□ 0.11
PCDHGB3-201ENST00000576222 CNTROBQ8N137 903 aa15.74■□□□□ 0.11
PCDHGB3-201ENST00000576222 UBTFL1P0CB47 393 aaPredicted RBP15.73■□□□□ 0.11
PCDHGB3-201ENST00000576222 BMP2KLQ5H9B9 411 aa15.73■□□□□ 0.11
PCDHGB3-201ENST00000576222 NPHP1O15259 732 aa15.73■□□□□ 0.11
PCDHGB3-201ENST00000576222 SURF6O75683 361 aaKnown RBP15.72■□□□□ 0.11
PCDHGB3-201ENST00000576222 SDF4Q9BRK5 362 aa15.72■□□□□ 0.11
PCDHGB3-201ENST00000576222 AFAP1Q8N556 730 aa15.72■□□□□ 0.11
PCDHGB3-201ENST00000576222 NAT10Q9H0A0 1025 aaKnown RBP15.72■□□□□ 0.11
PCDHGB3-201ENST00000576222 NSD3Q9BZ95 1437 aa15.72■□□□□ 0.11
PCDHGB3-201ENST00000576222 GRIN2BQ13224 1484 aa15.72■□□□□ 0.11
PCDHGB3-201ENST00000576222 KDM2BQ8NHM5 1336 aa15.72■□□□□ 0.11
PCDHGB3-201ENST00000576222 ABCA10Q8WWZ4 1543 aa15.72■□□□□ 0.11
PCDHGB3-201ENST00000576222 RPAP2Q8IXW5 612 aaPredicted RBP15.72■□□□□ 0.11
PCDHGB3-201ENST00000576222 GNAI2P04899 355 aa15.71■□□□□ 0.11
PCDHGB3-201ENST00000576222 TBC1D9Q6ZT07 1266 aa15.71■□□□□ 0.11
PCDHGB3-201ENST00000576222 PSMA5P28066 241 aa15.71■□□□□ 0.11
PCDHGB3-201ENST00000576222 CCDC9Q9Y3X0 531 aaKnown RBP15.71■□□□□ 0.11
PCDHGB3-201ENST00000576222 CAMSAP2Q08AD1 1489 aa15.71■□□□□ 0.11
PCDHGB3-201ENST00000576222 ZHX1Q9UKY1 873 aaPredicted RBP15.7■□□□□ 0.1
PCDHGB3-201ENST00000576222 RALGAPBQ86X10 1494 aa15.7■□□□□ 0.1
PCDHGB3-201ENST00000576222 ARHGAP5Q13017 1502 aa15.7■□□□□ 0.1
PCDHGB3-201ENST00000576222 TNMDQ9H2S6 317 aa15.7■□□□□ 0.1
PCDHGB3-201ENST00000576222 FOSBP53539 338 aa15.7■□□□□ 0.1
PCDHGB3-201ENST00000576222 G3BP1Q13283 466 aaKnown RBP eCLIP15.7■□□□□ 0.1
PCDHGB3-201ENST00000576222 TPM1P09493 284 aa15.7■□□□□ 0.1
PCDHGB3-201ENST00000576222 KRT85P78386 507 aa15.7■□□□□ 0.1
PCDHGB3-201ENST00000576222 ZSCAN23Q3MJ62 389 aa15.7■□□□□ 0.1
PCDHGB3-201ENST00000576222 LRRCC1Q9C099 1032 aa15.7■□□□□ 0.1
PCDHGB3-201ENST00000576222 ALDH1L2Q3SY69 923 aa15.69■□□□□ 0.1
PCDHGB3-201ENST00000576222 AEBP1Q8IUX7 1158 aa15.69■□□□□ 0.1
PCDHGB3-201ENST00000576222 SNX21Q969T3 373 aa15.69■□□□□ 0.1
PCDHGB3-201ENST00000576222 USP25Q9UHP3 1055 aa15.69■□□□□ 0.1
PCDHGB3-201ENST00000576222 SLC4A2P04920 1241 aa15.69■□□□□ 0.1
PCDHGB3-201ENST00000576222 HDAC1Q13547 482 aaPredicted RBP15.69■□□□□ 0.1
PCDHGB3-201ENST00000576222 PLEKHH1Q9ULM0 1364 aa15.69■□□□□ 0.1
PCDHGB3-201ENST00000576222 KINO60870 393 aaKnown RBP15.69■□□□□ 0.1
PCDHGB3-201ENST00000576222 TEFQ10587 303 aa15.69■□□□□ 0.1
PCDHGB3-201ENST00000576222 OFD1O75665 1012 aa15.68■□□□□ 0.1
PCDHGB3-201ENST00000576222 CLASRPQ8N2M8 674 aaKnown RBP15.68■□□□□ 0.1
PCDHGB3-201ENST00000576222 NOC3LQ8WTT2 800 aaKnown RBP15.68■□□□□ 0.1
PCDHGB3-201ENST00000576222 RBM27Q9P2N5 1060 aaKnown RBP15.68■□□□□ 0.1
PCDHGB3-201ENST00000576222 TULP1O00294 542 aaPredicted RBP15.68■□□□□ 0.1
PCDHGB3-201ENST00000576222 CPLX1O14810 134 aa15.68■□□□□ 0.1
PCDHGB3-201ENST00000576222 FCHSD2O94868 740 aa15.68■□□□□ 0.1
PCDHGB3-201ENST00000576222 SETQ01105 290 aaPredicted RBP15.68■□□□□ 0.1
PCDHGB3-201ENST00000576222 CPLX2Q6PUV4 134 aaKnown RBP15.68■□□□□ 0.1
PCDHGB3-201ENST00000576222 NOM1Q5C9Z4 860 aaKnown RBP15.67■□□□□ 0.1
PCDHGB3-201ENST00000576222 TAF3Q5VWG9 929 aa15.67■□□□□ 0.1
PCDHGB3-201ENST00000576222 CWC15Q9P013 229 aaKnown RBP15.67■□□□□ 0.1
PCDHGB3-201ENST00000576222 CCDC183Q5T5S1 534 aa15.67■□□□□ 0.1
PCDHGB3-201ENST00000576222 TSR1Q2NL82 804 aaKnown RBP15.66■□□□□ 0.1
PCDHGB3-201ENST00000576222 UPF3BQ9BZI7 483 aaKnown RBP15.66■□□□□ 0.1
PCDHGB3-201ENST00000576222 CYP46A1Q9Y6A2 500 aa15.66■□□□□ 0.1
PCDHGB3-201ENST00000576222 NUP62CLQ9H1M0 184 aa15.66■□□□□ 0.1
PCDHGB3-201ENST00000576222 CCT4P50991 539 aaKnown RBP15.66■□□□□ 0.1
PCDHGB3-201ENST00000576222 HSP90B2PQ58FF3 399 aa15.66■□□□□ 0.1
PCDHGB3-201ENST00000576222 TAF7LQ5H9L4 462 aa15.66■□□□□ 0.1
PCDHGB3-201ENST00000576222 LARP1BQ659C4 914 aaKnown RBP15.66■□□□□ 0.1
PCDHGB3-201ENST00000576222 ZKSCAN5Q9Y2L8 839 aa15.66■□□□□ 0.1
PCDHGB3-201ENST00000576222 PES1O00541 588 aaKnown RBP15.66■□□□□ 0.1
PCDHGB3-201ENST00000576222 SMC5Q8IY18 1101 aa15.66■□□□□ 0.1
PCDHGB3-201ENST00000576222 DNMBPQ6XZF7 1577 aa15.65■□□□□ 0.1
PCDHGB3-201ENST00000576222 SYNJ2O15056 1496 aa15.65■□□□□ 0.1
PCDHGB3-201ENST00000576222 SMC2O95347 1197 aa15.65■□□□□ 0.1
PCDHGB3-201ENST00000576222 RAB3GAP1Q15042 981 aa15.65■□□□□ 0.1
PCDHGB3-201ENST00000576222 PEG3Q9GZU2 1588 aa15.65■□□□□ 0.1
PCDHGB3-201ENST00000576222 LRSAM1Q6UWE0 723 aa15.65■□□□□ 0.1
PCDHGB3-201ENST00000576222 SYNE3Q6ZMZ3 975 aa15.65■□□□□ 0.1
PCDHGB3-201ENST00000576222 PRIMPOLQ96LW4 560 aa15.65■□□□□ 0.1
PCDHGB3-201ENST00000576222 ABCC11Q96J66 1382 aa15.65■□□□□ 0.1
PCDHGB3-201ENST00000576222 PER1O15534 1290 aaPredicted RBP15.65■□□□□ 0.1
PCDHGB3-201ENST00000576222 FMNL2Q96PY5 1086 aa15.65■□□□□ 0.1
PCDHGB3-201ENST00000576222 SRCIN1Q9C0H9 1055 aa15.65■□□□□ 0.1
PCDHGB3-201ENST00000576222 PPP4R3BQ5MIZ7 849 aa15.65■□□□□ 0.1
PCDHGB3-201ENST00000576222 NUCB1Q02818 461 aa15.64■□□□□ 0.09
PCDHGB3-201ENST00000576222 NEXNQ0ZGT2 675 aa15.64■□□□□ 0.09
PCDHGB3-201ENST00000576222 CCDC30Q5VVM6 783 aa15.64■□□□□ 0.09
PCDHGB3-201ENST00000576222 RASSF8Q8NHQ8 419 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms