RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 CDK19Q9BWU1 502 aa29.24■■■□□ 2.27
VPS53-211ENST00000571805 USP19O94966 1318 aa29.22■■■□□ 2.27
VPS53-211ENST00000571805 TSR2Q969E8 191 aaKnown RBP29.22■■■□□ 2.27
VPS53-211ENST00000571805 PNPLA6Q8IY17 1366 aa29.22■■■□□ 2.27
VPS53-211ENST00000571805 HDGFL2Q7Z4V5 671 aaPredicted RBP29.21■■■□□ 2.27
VPS53-211ENST00000571805 DAXXQ9UER7 740 aaPredicted RBP29.21■■■□□ 2.27
VPS53-211ENST00000571805 KIF20BQ96Q89 1820 aa29.19■■■□□ 2.26
VPS53-211ENST00000571805 MVPQ14764 893 aaKnown RBP29.19■■■□□ 2.26
VPS53-211ENST00000571805 CABP1Q9NZU7 370 aa29.19■■■□□ 2.26
VPS53-211ENST00000571805 ZKSCAN2Q63HK3 967 aa29.19■■■□□ 2.26
VPS53-211ENST00000571805 EXOSC9Q06265 439 aaKnown RBP29.18■■■□□ 2.26
VPS53-211ENST00000571805 REREQ9P2R6 1566 aa29.18■■■□□ 2.26
VPS53-211ENST00000571805 IL16Q14005 1332 aa29.18■■■□□ 2.26
VPS53-211ENST00000571805 STAG3Q9UJ98 1225 aa29.17■■■□□ 2.26
VPS53-211ENST00000571805 DIP2BQ9P265 1576 aa29.17■■■□□ 2.26
VPS53-211ENST00000571805 DIAPH1O60610 1272 aaKnown RBP29.17■■■□□ 2.26
VPS53-211ENST00000571805 AGLP35573 1532 aa29.17■■■□□ 2.26
VPS53-211ENST00000571805 SEC24BO95487 1268 aa29.16■■■□□ 2.26
VPS53-211ENST00000571805 FAM69CQ0P6D2 419 aa29.16■■■□□ 2.26
VPS53-211ENST00000571805 DLC1Q96QB1 1528 aa29.16■■■□□ 2.26
VPS53-211ENST00000571805 DZIP1LQ8IYY4 767 aaKnown RBP29.16■■■□□ 2.26
VPS53-211ENST00000571805 RWDD1Q9H446 243 aaPredicted RBP29.16■■■□□ 2.26
VPS53-211ENST00000571805 PPP6R1Q9UPN7 881 aa29.16■■■□□ 2.26
VPS53-211ENST00000571805 ZMYM3Q14202 1370 aa29.15■■■□□ 2.26
VPS53-211ENST00000571805 A2ML1A8K2U0 1454 aa29.15■■■□□ 2.26
VPS53-211ENST00000571805 PDZRN3Q9UPQ7 1066 aa29.15■■■□□ 2.26
VPS53-211ENST00000571805 SETD1AO15047 1707 aaKnown RBP29.13■■■□□ 2.25
VPS53-211ENST00000571805 RIPK4P57078 832 aa29.12■■■□□ 2.25
VPS53-211ENST00000571805 NFKBIBQ15653 356 aa29.12■■■□□ 2.25
VPS53-211ENST00000571805 SSH1Q8WYL5 1049 aa29.12■■■□□ 2.25
VPS53-211ENST00000571805 SMC4Q9NTJ3 1288 aa29.12■■■□□ 2.25
VPS53-211ENST00000571805 CDC42BPGQ6DT37 1551 aa29.12■■■□□ 2.25
VPS53-211ENST00000571805 SPATA31D1Q6ZQQ2 1576 aa29.12■■■□□ 2.25
VPS53-211ENST00000571805 FTSJ3Q8IY81 847 aaKnown RBP29.11■■■□□ 2.25
VPS53-211ENST00000571805 TSPOAP1O95153 1857 aa29.11■■■□□ 2.25
VPS53-211ENST00000571805 WAPLQ7Z5K2 1190 aa29.1■■■□□ 2.25
VPS53-211ENST00000571805 PNNQ9H307 717 aaKnown RBP29.1■■■□□ 2.25
VPS53-211ENST00000571805 RIMBP3CA6NJZ7 1639 aa29.1■■■□□ 2.25
VPS53-211ENST00000571805 RIMBP3BA6NNM3 1639 aa29.1■■■□□ 2.25
VPS53-211ENST00000571805 RIMBP3Q9UFD9 1639 aa29.1■■■□□ 2.25
VPS53-211ENST00000571805 TRIM27P14373 513 aa29.09■■■□□ 2.25
VPS53-211ENST00000571805 ATP7BP35670 1465 aa29.09■■■□□ 2.25
VPS53-211ENST00000571805 RIMS2Q9UQ26 1411 aa29.08■■■□□ 2.25
VPS53-211ENST00000571805 FCHSD2O94868 740 aa29.08■■■□□ 2.25
VPS53-211ENST00000571805 POLKQ9UBT6 870 aa29.06■■■□□ 2.24
VPS53-211ENST00000571805 LRRC7Q96NW7 1537 aa29.06■■■□□ 2.24
VPS53-211ENST00000571805 ATF7IPQ6VMQ6 1270 aa29.05■■■□□ 2.24
VPS53-211ENST00000571805 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.05■■■□□ 2.244e-6■■■■□ 21.2
VPS53-211ENST00000571805 RSPH6AQ9H0K4 717 aa29.03■■■□□ 2.24
VPS53-211ENST00000571805 NOB1Q9ULX3 412 aaKnown RBP29.03■■■□□ 2.24
VPS53-211ENST00000571805 FBLN1P23142 703 aa29.03■■■□□ 2.24
VPS53-211ENST00000571805 FAM135BQ49AJ0 1406 aa29.03■■■□□ 2.24
VPS53-211ENST00000571805 MAP2P11137 1827 aaKnown RBP29.02■■■□□ 2.24
VPS53-211ENST00000571805 DDX19BQ9UMR2 479 aa29.02■■■□□ 2.24
VPS53-211ENST00000571805 HDAC1Q13547 482 aaPredicted RBP29.01■■■□□ 2.23
VPS53-211ENST00000571805 NRXN3Q9Y4C0 1643 aa29■■■□□ 2.23
VPS53-211ENST00000571805 CPSF1Q10570 1443 aaKnown RBP28.99■■■□□ 2.23
VPS53-211ENST00000571805 PRKAR2BP31323 418 aa28.99■■■□□ 2.23
VPS53-211ENST00000571805 ITPRIPQ8IWB1 547 aa28.98■■■□□ 2.23
VPS53-211ENST00000571805 ALDH1L2Q3SY69 923 aa28.97■■■□□ 2.23
VPS53-211ENST00000571805 TMEM57Q8N5G2 664 aa28.96■■■□□ 2.23
VPS53-211ENST00000571805 WASLO00401 505 aaPredicted RBP28.96■■■□□ 2.23
VPS53-211ENST00000571805 KIF16BQ96L93 1317 aa28.95■■■□□ 2.23
VPS53-211ENST00000571805 EDC4Q6P2E9 1401 aaKnown RBP28.95■■■□□ 2.23
VPS53-211ENST00000571805 TBC1D32Q96NH3 1257 aa28.95■■■□□ 2.23
VPS53-211ENST00000571805 ZBTB40Q9NUA8 1239 aa28.95■■■□□ 2.22
VPS53-211ENST00000571805 PHACTR3Q96KR7 559 aa28.94■■■□□ 2.22
VPS53-211ENST00000571805 PPIP5K1Q6PFW1 1433 aa28.94■■■□□ 2.22
VPS53-211ENST00000571805 METP08581 1390 aa28.94■■■□□ 2.22
VPS53-211ENST00000571805 IPO8O15397 1037 aaKnown RBP28.94■■■□□ 2.22
VPS53-211ENST00000571805 MLECQ14165 292 aa28.94■■■□□ 2.22
VPS53-211ENST00000571805 BECN1Q14457 450 aa28.92■■■□□ 2.22
VPS53-211ENST00000571805 NFE2L2Q16236 605 aa28.92■■■□□ 2.22
VPS53-211ENST00000571805 UPF2Q9HAU5 1272 aaKnown RBP28.92■■■□□ 2.22
VPS53-211ENST00000571805 BRPF1P55201 1214 aaPredicted RBP28.91■■■□□ 2.22
VPS53-211ENST00000571805 GSE1Q14687 1217 aa28.91■■■□□ 2.22
VPS53-211ENST00000571805 SMC5Q8IY18 1101 aa28.91■■■□□ 2.22
VPS53-211ENST00000571805 EMILIN1Q9Y6C2 1016 aa28.91■■■□□ 2.22
VPS53-211ENST00000571805 FRAT2O75474 233 aaPredicted RBP28.91■■■□□ 2.22
VPS53-211ENST00000571805 IL13P35225 146 aa28.91■■■□□ 2.22
VPS53-211ENST00000571805 NME9Q86XW9 330 aa28.9■■■□□ 2.22
VPS53-211ENST00000571805 HMOX1P09601 288 aa28.9■■■□□ 2.22
VPS53-211ENST00000571805 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.9■■■□□ 2.22
VPS53-211ENST00000571805 ZNF428Q96B54 188 aa28.9■■■□□ 2.22
VPS53-211ENST00000571805 AATKQ6ZMQ8 1374 aa28.89■■■□□ 2.21
VPS53-211ENST00000571805 CDK12Q9NYV4 1490 aaPredicted RBP28.89■■■□□ 2.21
VPS53-211ENST00000571805 TXNDC2Q86VQ3 553 aa28.88■■■□□ 2.21
VPS53-211ENST00000571805 ZRANB1Q9UGI0 708 aa28.88■■■□□ 2.21
VPS53-211ENST00000571805 KNDC1Q76NI1 1749 aa28.87■■■□□ 2.21
VPS53-211ENST00000571805 NUDT16Q96DE0 195 aaKnown RBP28.87■■■□□ 2.21
VPS53-211ENST00000571805 SIRT1Q96EB6 747 aa28.87■■■□□ 2.21
VPS53-211ENST00000571805 MON2Q7Z3U7 1717 aa28.86■■■□□ 2.21
VPS53-211ENST00000571805 CPS1P31327 1500 aa28.85■■■□□ 2.21
VPS53-211ENST00000571805 VAMP4O75379 141 aa28.84■■■□□ 2.21
VPS53-211ENST00000571805 THUMPD2Q9BTF0 503 aaKnown RBP28.84■■■□□ 2.21
VPS53-211ENST00000571805 TECPR2O15040 1411 aa28.84■■■□□ 2.21
VPS53-211ENST00000571805 NCKAP5LQ9HCH0 1330 aa28.84■■■□□ 2.21
VPS53-211ENST00000571805 CALD1Q05682 793 aaKnown RBP28.83■■■□□ 2.21
VPS53-211ENST00000571805 ZNF853P0CG23 659 aa28.83■■■□□ 2.21
VPS53-211ENST00000571805 CCDC61Q9Y6R9 512 aa28.83■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms