RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 SSH1Q8WYL5 1049 aa14.33□□□□□ -0.12
CUX1-218ENST00000560541 PRDM4Q9UKN5 801 aa14.33□□□□□ -0.12
CUX1-218ENST00000560541 TULP4Q9NRJ4 1543 aa14.32□□□□□ -0.12
CUX1-218ENST00000560541 RAPGEF3O95398 923 aa14.32□□□□□ -0.12
CUX1-218ENST00000560541 LMTK2Q8IWU2 1503 aa14.32□□□□□ -0.12
CUX1-218ENST00000560541 A0A1W2PP64 1363 aa14.31□□□□□ -0.12
CUX1-218ENST00000560541 MINK1Q8N4C8 1332 aaPredicted RBP14.31□□□□□ -0.12
CUX1-218ENST00000560541 TMPOP42166 694 aaKnown RBP14.31□□□□□ -0.12
CUX1-218ENST00000560541 ANTXR1Q9H6X2 564 aa14.31□□□□□ -0.12
CUX1-218ENST00000560541 NAP1L2Q9ULW6 460 aaPredicted RBP14.31□□□□□ -0.12
CUX1-218ENST00000560541 GLI2P10070 1586 aa14.31□□□□□ -0.12
CUX1-218ENST00000560541 VGFO15240 615 aaPredicted RBP14.3□□□□□ -0.12
CUX1-218ENST00000560541 NOB1Q9ULX3 412 aaKnown RBP14.3□□□□□ -0.12
CUX1-218ENST00000560541 TRIM35Q9UPQ4 493 aa14.3□□□□□ -0.12
CUX1-218ENST00000560541 CD109Q6YHK3 1445 aa14.3□□□□□ -0.12
CUX1-218ENST00000560541 NPM1P06748 294 aaKnown RBP eCLIP14.3□□□□□ -0.12
CUX1-218ENST00000560541 FRMPD1Q5SYB0 1578 aa14.3□□□□□ -0.12
CUX1-218ENST00000560541 RPGRIP1LQ68CZ1 1315 aa14.29□□□□□ -0.12
CUX1-218ENST00000560541 FBLN1P23142 703 aa14.29□□□□□ -0.12
CUX1-218ENST00000560541 PLEKHF1Q96S99 279 aa14.29□□□□□ -0.12
CUX1-218ENST00000560541 RIPK4P57078 832 aa14.28□□□□□ -0.12
CUX1-218ENST00000560541 IDI1Q13907 227 aa14.28□□□□□ -0.12
CUX1-218ENST00000560541 TMEM57Q8N5G2 664 aa14.28□□□□□ -0.12
CUX1-218ENST00000560541 ATF7IPQ6VMQ6 1270 aa14.28□□□□□ -0.12
CUX1-218ENST00000560541 C22orf23Q9BZE7 217 aa14.28□□□□□ -0.12
CUX1-218ENST00000560541 POGZQ7Z3K3 1410 aa14.28□□□□□ -0.12
CUX1-218ENST00000560541 GZF1Q9H116 711 aaPredicted RBP14.27□□□□□ -0.12
CUX1-218ENST00000560541 ABCC3O15438 1527 aa14.27□□□□□ -0.13
CUX1-218ENST00000560541 FYB1O15117 783 aa14.27□□□□□ -0.13
CUX1-218ENST00000560541 NSD2O96028 1365 aa14.27□□□□□ -0.13
CUX1-218ENST00000560541 ARID3AQ99856 593 aa14.26□□□□□ -0.13
CUX1-218ENST00000560541 USP32Q8NFA0 1604 aa14.26□□□□□ -0.13
CUX1-218ENST00000560541 PRAM1Q96QH2 718 aa14.26□□□□□ -0.13
CUX1-218ENST00000560541 DDX19BQ9UMR2 479 aa14.26□□□□□ -0.13
CUX1-218ENST00000560541 ARHGEF28Q8N1W1 1705 aaKnown RBP14.26□□□□□ -0.13
CUX1-218ENST00000560541 ABCC11Q96J66 1382 aa14.25□□□□□ -0.13
CUX1-218ENST00000560541 CAMSAP1Q5T5Y3 1602 aa14.25□□□□□ -0.13
CUX1-218ENST00000560541 TAF7LQ5H9L4 462 aa14.25□□□□□ -0.13
CUX1-218ENST00000560541 SIGLEC1Q9BZZ2 1709 aa14.25□□□□□ -0.13
CUX1-218ENST00000560541 LNPKQ9C0E8 428 aa14.24□□□□□ -0.13
CUX1-218ENST00000560541 ADGRB2O60241 1585 aa14.24□□□□□ -0.13
CUX1-218ENST00000560541 ZHX1Q9UKY1 873 aaPredicted RBP14.24□□□□□ -0.13
CUX1-218ENST00000560541 HECW2Q9P2P5 1572 aa14.24□□□□□ -0.13
CUX1-218ENST00000560541 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.24□□□□□ -0.13
CUX1-218ENST00000560541 NEXMIFQ5QGS0 1516 aa14.23□□□□□ -0.13
CUX1-218ENST00000560541 DIAPH1O60610 1272 aaKnown RBP14.23□□□□□ -0.13
CUX1-218ENST00000560541 HDAC1Q13547 482 aaPredicted RBP14.23□□□□□ -0.13
CUX1-218ENST00000560541 CALD1Q05682 793 aaKnown RBP14.23□□□□□ -0.13
CUX1-218ENST00000560541 CT47B1P0C2W7 299 aaPredicted RBP14.22□□□□□ -0.13
CUX1-218ENST00000560541 THUMPD2Q9BTF0 503 aaKnown RBP14.22□□□□□ -0.13
CUX1-218ENST00000560541 TERF2IPQ9NYB0 399 aa14.22□□□□□ -0.13
CUX1-218ENST00000560541 MLH3Q9UHC1 1453 aa14.22□□□□□ -0.13
CUX1-218ENST00000560541 PUS7Q96PZ0 661 aaKnown RBP14.22□□□□□ -0.13
CUX1-218ENST00000560541 C1orf115Q9H7X2 142 aa14.22□□□□□ -0.13
CUX1-218ENST00000560541 ZBTB40Q9NUA8 1239 aa14.22□□□□□ -0.13
CUX1-218ENST00000560541 CABP1Q9NZU7 370 aa14.22□□□□□ -0.13
CUX1-218ENST00000560541 ZMYM3Q14202 1370 aa14.21□□□□□ -0.13
CUX1-218ENST00000560541 ELL2O00472 640 aaPredicted RBP14.21□□□□□ -0.13
CUX1-218ENST00000560541 HMOX1P09601 288 aa14.21□□□□□ -0.14
CUX1-218ENST00000560541 GTF2E1P29083 439 aaPredicted RBP14.21□□□□□ -0.14
CUX1-218ENST00000560541 SMC5Q8IY18 1101 aa14.21□□□□□ -0.14
CUX1-218ENST00000560541 COL3A1P02461 1466 aaPredicted RBP14.2□□□□□ -0.14
CUX1-218ENST00000560541 MCM4P33991 863 aa14.2□□□□□ -0.14
CUX1-218ENST00000560541 PRKAR2BP31323 418 aa14.2□□□□□ -0.14
CUX1-218ENST00000560541 NCBP3Q53F19 620 aaKnown RBP14.19□□□□□ -0.14
CUX1-218ENST00000560541 CDK19Q9BWU1 502 aa14.19□□□□□ -0.14
CUX1-218ENST00000560541 HSCBQ8IWL3 235 aa14.19□□□□□ -0.14
CUX1-218ENST00000560541 KIF16BQ96L93 1317 aa14.19□□□□□ -0.14
CUX1-218ENST00000560541 IPO8O15397 1037 aaKnown RBP14.18□□□□□ -0.14
CUX1-218ENST00000560541 FBXO31Q5XUX0 539 aaPredicted RBP14.18□□□□□ -0.14
CUX1-218ENST00000560541 HDGFL2Q7Z4V5 671 aaPredicted RBP14.18□□□□□ -0.14
CUX1-218ENST00000560541 PLCD3Q8N3E9 789 aa14.18□□□□□ -0.14
CUX1-218ENST00000560541 PHACTR3Q96KR7 559 aa14.18□□□□□ -0.14
CUX1-218ENST00000560541 CHMP5Q9NZZ3 219 aa14.18□□□□□ -0.14
CUX1-218ENST00000560541 CD163L1Q9NR16 1453 aa14.17□□□□□ -0.14
CUX1-218ENST00000560541 ATAD2Q6PL18 1390 aa14.17□□□□□ -0.14
CUX1-218ENST00000560541 PANK2Q9BZ23 570 aa14.17□□□□□ -0.14
CUX1-218ENST00000560541 IL16Q14005 1332 aa14.17□□□□□ -0.14
CUX1-218ENST00000560541 NUCB1Q02818 461 aa14.16□□□□□ -0.14
CUX1-218ENST00000560541 L1TD1Q5T7N2 865 aaKnown RBP14.16□□□□□ -0.14
CUX1-218ENST00000560541 ANKRD45Q5TZF3 282 aa14.16□□□□□ -0.14
CUX1-218ENST00000560541 CHD1LQ86WJ1 897 aa14.16□□□□□ -0.14
CUX1-218ENST00000560541 TSPYL6Q8N831 410 aa14.16□□□□□ -0.14
CUX1-218ENST00000560541 PDCL3Q9H2J4 239 aa14.16□□□□□ -0.14
CUX1-218ENST00000560541 PRDM10Q9NQV6 1147 aa14.16□□□□□ -0.14
CUX1-218ENST00000560541 FOXD4L1Q9NU39 408 aa14.16□□□□□ -0.14
CUX1-218ENST00000560541 STAG3Q9UJ98 1225 aa14.16□□□□□ -0.14
CUX1-218ENST00000560541 PTPRMP28827 1452 aa14.16□□□□□ -0.14
CUX1-218ENST00000560541 PIK3C2BO00750 1634 aa14.16□□□□□ -0.14
CUX1-218ENST00000560541 GOLGA6L3A6NEY3 463 aa14.16□□□□□ -0.14
CUX1-218ENST00000560541 XRCC6P12956 609 aaKnown RBP eCLIP14.16□□□□□ -0.14
CUX1-218ENST00000560541 WAPLQ7Z5K2 1190 aa14.16□□□□□ -0.14
CUX1-218ENST00000560541 TRAK2O60296 914 aa14.15□□□□□ -0.14
CUX1-218ENST00000560541 SLC52A1Q9NWF4 448 aa14.15□□□□□ -0.14
CUX1-218ENST00000560541 YTHDC2Q9H6S0 1430 aaKnown RBP14.15□□□□□ -0.14
CUX1-218ENST00000560541 CLCN1P35523 988 aa14.15□□□□□ -0.14
CUX1-218ENST00000560541 MYO5BQ9ULV0 1848 aa14.15□□□□□ -0.14
CUX1-218ENST00000560541 POLKQ9UBT6 870 aa14.14□□□□□ -0.15
CUX1-218ENST00000560541 EMILIN1Q9Y6C2 1016 aa14.14□□□□□ -0.15
CUX1-218ENST00000560541 YEATS2Q9ULM3 1422 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms