RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 CDK19Q9BWU1 502 aa15.7■□□□□ 0.1
SHMT2-207ENST00000553837 STAG3Q9UJ98 1225 aa15.7■□□□□ 0.1
SHMT2-207ENST00000553837 COL3A1P02461 1466 aaPredicted RBP15.7■□□□□ 0.1
SHMT2-207ENST00000553837 PANK1Q8TE04 598 aa15.7■□□□□ 0.1
SHMT2-207ENST00000553837 ATAD2Q6PL18 1390 aa15.7■□□□□ 0.1
SHMT2-207ENST00000553837 SPATA31D1Q6ZQQ2 1576 aa15.69■□□□□ 0.1
SHMT2-207ENST00000553837 WAPLQ7Z5K2 1190 aa15.69■□□□□ 0.1
SHMT2-207ENST00000553837 VSIG10Q8N0Z9 540 aa15.69■□□□□ 0.1
SHMT2-207ENST00000553837 WDR63Q8IWG1 891 aa15.69■□□□□ 0.1
SHMT2-207ENST00000553837 TNNQ9UQP3 1299 aa15.69■□□□□ 0.1
SHMT2-207ENST00000553837 SETD1AO15047 1707 aaKnown RBP15.68■□□□□ 0.1
SHMT2-207ENST00000553837 ADGRB2O60241 1585 aa15.68■□□□□ 0.1
SHMT2-207ENST00000553837 RARSP54136 660 aaKnown RBP15.68■□□□□ 0.1
SHMT2-207ENST00000553837 CCDC27Q2M243 656 aa15.68■□□□□ 0.1
SHMT2-207ENST00000553837 CABP1Q9NZU7 370 aa15.68■□□□□ 0.1
SHMT2-207ENST00000553837 IGHDP01880 384 aa15.68■□□□□ 0.1
SHMT2-207ENST00000553837 PLEKHF1Q96S99 279 aa15.68■□□□□ 0.1
SHMT2-207ENST00000553837 RIMS2Q9UQ26 1411 aa15.67■□□□□ 0.1
SHMT2-207ENST00000553837 ANKRD26Q9UPS8 1709 aa15.67■□□□□ 0.1
SHMT2-207ENST00000553837 TERF2IPQ9NYB0 399 aa15.67■□□□□ 0.1
SHMT2-207ENST00000553837 PDE3AQ14432 1141 aa15.66■□□□□ 0.1
SHMT2-207ENST00000553837 PPP6R1Q9UPN7 881 aa15.66■□□□□ 0.1
SHMT2-207ENST00000553837 COG6Q9Y2V7 657 aa15.66■□□□□ 0.1
SHMT2-207ENST00000553837 C8orf34Q49A92 452 aa15.66■□□□□ 0.1
SHMT2-207ENST00000553837 MED14O60244 1454 aa15.65■□□□□ 0.1
SHMT2-207ENST00000553837 BCL2L13Q9BXK5 485 aa15.65■□□□□ 0.1
SHMT2-207ENST00000553837 U2SURPO15042 1029 aaKnown RBP15.65■□□□□ 0.1
SHMT2-207ENST00000553837 RLBP1P12271 317 aa15.65■□□□□ 0.1
SHMT2-207ENST00000553837 FBLN1P23142 703 aa15.65■□□□□ 0.1
SHMT2-207ENST00000553837 NRXN3Q9Y4C0 1643 aa15.64■□□□□ 0.09
SHMT2-207ENST00000553837 L1TD1Q5T7N2 865 aaKnown RBP15.63■□□□□ 0.09
SHMT2-207ENST00000553837 DLC1Q96QB1 1528 aa15.63■□□□□ 0.09
SHMT2-207ENST00000553837 TRIM35Q9UPQ4 493 aa15.63■□□□□ 0.09
SHMT2-207ENST00000553837 CANXP27824 592 aaKnown RBP15.62■□□□□ 0.09
SHMT2-207ENST00000553837 RGS3P49796 1198 aa15.62■□□□□ 0.09
SHMT2-207ENST00000553837 NCBP3Q53F19 620 aaKnown RBP15.62■□□□□ 0.09
SHMT2-207ENST00000553837 HDGFL2Q7Z4V5 671 aaPredicted RBP15.62■□□□□ 0.09
SHMT2-207ENST00000553837 METP08581 1390 aa15.62■□□□□ 0.09
SHMT2-207ENST00000553837 TMPOP42166 694 aaKnown RBP15.62■□□□□ 0.09
SHMT2-207ENST00000553837 TSR2Q969E8 191 aaKnown RBP15.62■□□□□ 0.09
SHMT2-207ENST00000553837 CLUAP1Q96AJ1 413 aa15.62■□□□□ 0.09
SHMT2-207ENST00000553837 KIF20BQ96Q89 1820 aa15.61■□□□□ 0.09
SHMT2-207ENST00000553837 PNPLA6Q8IY17 1366 aa15.61■□□□□ 0.09
SHMT2-207ENST00000553837 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.61■□□□□ 0.09
SHMT2-207ENST00000553837 RRP9O43818 475 aaKnown RBP15.6■□□□□ 0.09
SHMT2-207ENST00000553837 ZMYM3Q14202 1370 aa15.6■□□□□ 0.09
SHMT2-207ENST00000553837 MYH16Q9H6N6 1097 aa15.59■□□□□ 0.09
SHMT2-207ENST00000553837 RRAGDQ9NQL2 400 aaPredicted RBP15.58■□□□□ 0.08
SHMT2-207ENST00000553837 PCDHB15Q9Y5E8 787 aa15.58■□□□□ 0.08
SHMT2-207ENST00000553837 NCKAP5LQ9HCH0 1330 aa15.58■□□□□ 0.08
SHMT2-207ENST00000553837 DIAPH1O60610 1272 aaKnown RBP15.58■□□□□ 0.08
SHMT2-207ENST00000553837 TXNDC2Q86VQ3 553 aa15.58■□□□□ 0.08
SHMT2-207ENST00000553837 POLKQ9UBT6 870 aa15.57■□□□□ 0.08
SHMT2-207ENST00000553837 ATP7BP35670 1465 aa15.57■□□□□ 0.08
SHMT2-207ENST00000553837 EXOSC9Q06265 439 aaKnown RBP15.56■□□□□ 0.08
SHMT2-207ENST00000553837 ZRANB1Q9UGI0 708 aa15.56■□□□□ 0.08
SHMT2-207ENST00000553837 WASLO00401 505 aaPredicted RBP15.55■□□□□ 0.08
SHMT2-207ENST00000553837 BECN1Q14457 450 aa15.55■□□□□ 0.08
SHMT2-207ENST00000553837 CPSF1Q10570 1443 aaKnown RBP15.55■□□□□ 0.08
SHMT2-207ENST00000553837 RIPK4P57078 832 aa15.55■□□□□ 0.08
SHMT2-207ENST00000553837 MAPK8IP3Q9UPT6 1336 aa15.55■□□□□ 0.08
SHMT2-207ENST00000553837 LRRC7Q96NW7 1537 aa15.54■□□□□ 0.08
SHMT2-207ENST00000553837 PPIP5K1Q6PFW1 1433 aa15.54■□□□□ 0.08
SHMT2-207ENST00000553837 CDC42BPGQ6DT37 1551 aa15.54■□□□□ 0.08
SHMT2-207ENST00000553837 NME9Q86XW9 330 aa15.53■□□□□ 0.08
SHMT2-207ENST00000553837 EMILIN1Q9Y6C2 1016 aa15.53■□□□□ 0.08
SHMT2-207ENST00000553837 MAP2P11137 1827 aaKnown RBP15.53■□□□□ 0.08
SHMT2-207ENST00000553837 HSP90AA2PQ14568 343 aaPredicted RBP15.52■□□□□ 0.08
SHMT2-207ENST00000553837 SSH1Q8WYL5 1049 aa15.52■□□□□ 0.08
SHMT2-207ENST00000553837 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.52■□□□□ 0.07
SHMT2-207ENST00000553837 CPS1P31327 1500 aa15.52■□□□□ 0.07
SHMT2-207ENST00000553837 PRKAR2BP31323 418 aa15.51■□□□□ 0.07
SHMT2-207ENST00000553837 NUDT16Q96DE0 195 aaKnown RBP15.51■□□□□ 0.07
SHMT2-207ENST00000553837 PHACTR3Q96KR7 559 aa15.51■□□□□ 0.07
SHMT2-207ENST00000553837 TNRQ92752 1358 aa15.51■□□□□ 0.07
SHMT2-207ENST00000553837 PNNQ9H307 717 aaKnown RBP15.51■□□□□ 0.07
SHMT2-207ENST00000553837 ESF1Q9H501 851 aaKnown RBP15.51■□□□□ 0.07
SHMT2-207ENST00000553837 FAM135BQ49AJ0 1406 aa15.5■□□□□ 0.07
SHMT2-207ENST00000553837 EDC4Q6P2E9 1401 aaKnown RBP15.5■□□□□ 0.07
SHMT2-207ENST00000553837 IL16Q14005 1332 aa15.5■□□□□ 0.07
SHMT2-207ENST00000553837 FCHSD2O94868 740 aa15.5■□□□□ 0.07
SHMT2-207ENST00000553837 HMOX1P09601 288 aa15.5■□□□□ 0.07
SHMT2-207ENST00000553837 MVPQ14764 893 aaKnown RBP15.5■□□□□ 0.07
SHMT2-207ENST00000553837 ZKSCAN2Q63HK3 967 aa15.5■□□□□ 0.07
SHMT2-207ENST00000553837 SMC4Q9NTJ3 1288 aa15.5■□□□□ 0.07
SHMT2-207ENST00000553837 TECPR2O15040 1411 aa15.5■□□□□ 0.07
SHMT2-207ENST00000553837 PRR36Q9H6K5 1346 aa15.5■□□□□ 0.07
SHMT2-207ENST00000553837 KNDC1Q76NI1 1749 aa15.49■□□□□ 0.07
SHMT2-207ENST00000553837 TRIM27P14373 513 aa15.49■□□□□ 0.07
SHMT2-207ENST00000553837 UBR1Q8IWV7 1749 aa15.49■□□□□ 0.07
SHMT2-207ENST00000553837 HSP90AA1P07900 732 aaKnown RBP15.49■□□□□ 0.07
SHMT2-207ENST00000553837 CT47B1P0C2W7 299 aaPredicted RBP15.49■□□□□ 0.07
SHMT2-207ENST00000553837 DZIP1LQ8IYY4 767 aaKnown RBP15.49■□□□□ 0.07
SHMT2-207ENST00000553837 NAP1L5Q96NT1 182 aaPredicted RBP15.49■□□□□ 0.07
SHMT2-207ENST00000553837 TMEM2Q9UHN6 1383 aa15.49■□□□□ 0.07
SHMT2-207ENST00000553837 SEC24BO95487 1268 aa15.48■□□□□ 0.07
SHMT2-207ENST00000553837 CLCN1P35523 988 aa15.48■□□□□ 0.07
SHMT2-207ENST00000553837 ROBO2Q9HCK4 1378 aa15.48■□□□□ 0.07
SHMT2-207ENST00000553837 IL13P35225 146 aa15.48■□□□□ 0.07
SHMT2-207ENST00000553837 PMFBP1Q8TBY8 1022 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 182.9 ms