RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 ARXQ96QS3 562 aa22.1■■□□□ 1.13
SYNE3-202ENST00000553340 GZF1Q9H116 711 aaPredicted RBP22.1■■□□□ 1.13
SYNE3-202ENST00000553340 CABP2Q9NPB3 220 aa22.1■■□□□ 1.13
SYNE3-202ENST00000553340 ARHGEF28Q8N1W1 1705 aaKnown RBP22.1■■□□□ 1.13
SYNE3-202ENST00000553340 GGT6Q6P531 493 aa22.1■■□□□ 1.13
SYNE3-202ENST00000553340 VGFO15240 615 aaPredicted RBP22.09■■□□□ 1.13
SYNE3-202ENST00000553340 IPO8O15397 1037 aaKnown RBP22.09■■□□□ 1.13
SYNE3-202ENST00000553340 TMEM57Q8N5G2 664 aa22.09■■□□□ 1.13
SYNE3-202ENST00000553340 ZBTB40Q9NUA8 1239 aa22.08■■□□□ 1.13
SYNE3-202ENST00000553340 KIF16BQ96L93 1317 aa22.08■■□□□ 1.13
SYNE3-202ENST00000553340 DDX11L8A8MPP1 907 aa22.08■■□□□ 1.12
SYNE3-202ENST00000553340 A0A1W2PP64 1363 aa22.06■■□□□ 1.12
SYNE3-202ENST00000553340 RBM25P49756 843 aaKnown RBP22.06■■□□□ 1.12
SYNE3-202ENST00000553340 GGNBP2Q9H3C7 697 aa22.05■■□□□ 1.12
SYNE3-202ENST00000553340 ASXL2Q76L83 1435 aa22.05■■□□□ 1.12
SYNE3-202ENST00000553340 COL3A1P02461 1466 aaPredicted RBP22.05■■□□□ 1.12
SYNE3-202ENST00000553340 RIPK4P57078 832 aa22.05■■□□□ 1.12
SYNE3-202ENST00000553340 NUCB1Q02818 461 aa22.05■■□□□ 1.12
SYNE3-202ENST00000553340 MRE11P49959 708 aa22.04■■□□□ 1.12
SYNE3-202ENST00000553340 NUTM2DQ5VT03 806 aaPredicted RBP22.04■■□□□ 1.12
SYNE3-202ENST00000553340 ZNF692Q9BU19 519 aaPredicted RBP22.04■■□□□ 1.12
SYNE3-202ENST00000553340 SNX21Q969T3 373 aa22.04■■□□□ 1.12
SYNE3-202ENST00000553340 HECW2Q9P2P5 1572 aa22.03■■□□□ 1.12
SYNE3-202ENST00000553340 NCOA3Q9Y6Q9 1424 aa22.03■■□□□ 1.12
SYNE3-202ENST00000553340 PANK2Q9BZ23 570 aa22.03■■□□□ 1.12
SYNE3-202ENST00000553340 PNNQ9H307 717 aaKnown RBP22.03■■□□□ 1.12
SYNE3-202ENST00000553340 SAFB2Q14151 953 aaKnown RBP eCLIP22.03■■□□□ 1.12
SYNE3-202ENST00000553340 SRPK2P78362 688 aaKnown RBP22.02■■□□□ 1.12
SYNE3-202ENST00000553340 ALDH1L2Q3SY69 923 aa22.02■■□□□ 1.12
SYNE3-202ENST00000553340 FRMPD1Q5SYB0 1578 aa22.02■■□□□ 1.11
SYNE3-202ENST00000553340 ABCC3O15438 1527 aa22.01■■□□□ 1.11
SYNE3-202ENST00000553340 DDIT3P35638 169 aa22.01■■□□□ 1.11
SYNE3-202ENST00000553340 LNPKQ9C0E8 428 aa22.01■■□□□ 1.11
SYNE3-202ENST00000553340 ISY1Q9ULR0 285 aaKnown RBP22.01■■□□□ 1.11
SYNE3-202ENST00000553340 CAMSAP1Q5T5Y3 1602 aa22■■□□□ 1.11
SYNE3-202ENST00000553340 CHD1LQ86WJ1 897 aa22■■□□□ 1.11
SYNE3-202ENST00000553340 NEXMIFQ5QGS0 1516 aa22■■□□□ 1.11
SYNE3-202ENST00000553340 UBE2Q2Q8WVN8 375 aa22■■□□□ 1.11
SYNE3-202ENST00000553340 TERF2IPQ9NYB0 399 aa22■■□□□ 1.11
SYNE3-202ENST00000553340 DIAPH1O60610 1272 aaKnown RBP21.99■■□□□ 1.11
SYNE3-202ENST00000553340 MLH3Q9UHC1 1453 aa21.99■■□□□ 1.11
SYNE3-202ENST00000553340 FYB1O15117 783 aa21.99■■□□□ 1.11
SYNE3-202ENST00000553340 MED14O60244 1454 aa21.98■■□□□ 1.11
SYNE3-202ENST00000553340 CIZ1Q9ULV3 898 aaPredicted RBP21.98■■□□□ 1.11
SYNE3-202ENST00000553340 POGZQ7Z3K3 1410 aa21.98■■□□□ 1.11
SYNE3-202ENST00000553340 ATAD2Q6PL18 1390 aa21.97■■□□□ 1.11
SYNE3-202ENST00000553340 CLCN1P35523 988 aa21.97■■□□□ 1.11
SYNE3-202ENST00000553340 BMP2KLQ5H9B9 411 aa21.97■■□□□ 1.11
SYNE3-202ENST00000553340 PIK3C2BO00750 1634 aa21.97■■□□□ 1.11
SYNE3-202ENST00000553340 GRPEL1Q9HAV7 217 aa21.97■■□□□ 1.11
SYNE3-202ENST00000553340 ANKRD26Q9UPS8 1709 aa21.97■■□□□ 1.11
SYNE3-202ENST00000553340 HSP90AB1P08238 724 aaKnown RBP21.96■■□□□ 1.11
SYNE3-202ENST00000553340 ZNF428Q96B54 188 aa21.96■■□□□ 1.11
SYNE3-202ENST00000553340 STK26Q9P289 416 aa21.96■■□□□ 1.11
SYNE3-202ENST00000553340 GBP4Q96PP9 640 aa21.95■■□□□ 1.11
SYNE3-202ENST00000553340 CHMP4BQ9H444 224 aaKnown RBP21.95■■□□□ 1.11
SYNE3-202ENST00000553340 TNPO1Q92973 898 aaKnown RBP21.95■■□□□ 1.1
SYNE3-202ENST00000553340 SIGLEC1Q9BZZ2 1709 aa21.94■■□□□ 1.1
SYNE3-202ENST00000553340 BRPF1P55201 1214 aaPredicted RBP21.94■■□□□ 1.1
SYNE3-202ENST00000553340 GCC1Q96CN9 775 aa21.94■■□□□ 1.1
SYNE3-202ENST00000553340 PNPLA6Q8IY17 1366 aa21.94■■□□□ 1.1
SYNE3-202ENST00000553340 FCHSD2O94868 740 aa21.93■■□□□ 1.1
SYNE3-202ENST00000553340 CFAP74Q9C0B2 1584 aa21.93■■□□□ 1.1
SYNE3-202ENST00000553340 ZFYVE9O95405 1425 aa21.92■■□□□ 1.1
SYNE3-202ENST00000553340 ANKRD45Q5TZF3 282 aa21.92■■□□□ 1.1
SYNE3-202ENST00000553340 PTMSP20962 102 aa21.92■■□□□ 1.1
SYNE3-202ENST00000553340 RAB3GAP1Q15042 981 aa21.92■■□□□ 1.1
SYNE3-202ENST00000553340 SKOR2Q2VWA4 1001 aaPredicted RBP21.91■■□□□ 1.1
SYNE3-202ENST00000553340 ZBTB7BO15156 539 aaPredicted RBP21.91■■□□□ 1.1
SYNE3-202ENST00000553340 HSP90AA1P07900 732 aaKnown RBP21.91■■□□□ 1.1
SYNE3-202ENST00000553340 HDGFL2Q7Z4V5 671 aaPredicted RBP21.91■■□□□ 1.1
SYNE3-202ENST00000553340 CD163L1Q9NR16 1453 aa21.9■■□□□ 1.1
SYNE3-202ENST00000553340 MINK1Q8N4C8 1332 aaPredicted RBP21.9■■□□□ 1.1
SYNE3-202ENST00000553340 PPIP5K1Q6PFW1 1433 aa21.89■■□□□ 1.1
SYNE3-202ENST00000553340 ARHGAP45Q92619 1136 aa21.89■■□□□ 1.09
SYNE3-202ENST00000553340 KIF2CQ99661 725 aa21.89■■□□□ 1.09
SYNE3-202ENST00000553340 IDI1Q13907 227 aa21.89■■□□□ 1.09
SYNE3-202ENST00000553340 NAP1L5Q96NT1 182 aaPredicted RBP21.89■■□□□ 1.09
SYNE3-202ENST00000553340 PTPRMP28827 1452 aa21.88■■□□□ 1.09
SYNE3-202ENST00000553340 PRKAR2BP31323 418 aa21.88■■□□□ 1.09
SYNE3-202ENST00000553340 PRAM1Q96QH2 718 aa21.88■■□□□ 1.09
SYNE3-202ENST00000553340 LRRC7Q96NW7 1537 aa21.87■■□□□ 1.09
SYNE3-202ENST00000553340 CDC42BPGQ6DT37 1551 aa21.87■■□□□ 1.09
SYNE3-202ENST00000553340 CLTCQ00610 1675 aaKnown RBP21.87■■□□□ 1.09
SYNE3-202ENST00000553340 K7ELQ4 463 aaPredicted RBP21.86■■□□□ 1.09
SYNE3-202ENST00000553340 CALD1Q05682 793 aaKnown RBP21.86■■□□□ 1.09
SYNE3-202ENST00000553340 FAM135BQ49AJ0 1406 aa21.86■■□□□ 1.09
SYNE3-202ENST00000553340 PIK3R4Q99570 1358 aa21.86■■□□□ 1.09
SYNE3-202ENST00000553340 NPM1P06748 294 aaKnown RBP eCLIP21.86■■□□□ 1.09
SYNE3-202ENST00000553340 TBC1D9Q6ZT07 1266 aa21.86■■□□□ 1.09
SYNE3-202ENST00000553340 SLC52A1Q9NWF4 448 aa21.86■■□□□ 1.09
SYNE3-202ENST00000553340 VAMP4O75379 141 aa21.85■■□□□ 1.09
SYNE3-202ENST00000553340 MRPL50Q8N5N7 158 aaKnown RBP21.85■■□□□ 1.09
SYNE3-202ENST00000553340 ARHGAP31Q2M1Z3 1444 aa21.85■■□□□ 1.09
SYNE3-202ENST00000553340 SENP3Q9H4L4 574 aaPredicted RBP21.85■■□□□ 1.09
SYNE3-202ENST00000553340 PTCH1Q13635 1447 aa21.85■■□□□ 1.09
SYNE3-202ENST00000553340 ESPNB1AK53 854 aa21.84■■□□□ 1.09
SYNE3-202ENST00000553340 C1orf115Q9H7X2 142 aa21.84■■□□□ 1.09
SYNE3-202ENST00000553340 CD2BP2O95400 341 aaKnown RBP21.83■■□□□ 1.09
SYNE3-202ENST00000553340 TRIM44Q96DX7 344 aaPredicted RBP21.83■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms