RNA–Protein interactions for RNA: ENST00000549162.5

SCAF11-212, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 1 (best) BASIC

Gene SCAF11, Length 3,934 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-212ENST00000549162 PROM2Q8N271 834 aa7.19□□□□□ -1.26
SCAF11-212ENST00000549162 HNRNPMP52272 730 aaKnown RBP eCLIP7.19□□□□□ -1.26
SCAF11-212ENST00000549162 NUP188Q5SRE5 1749 aa7.19□□□□□ -1.26
SCAF11-212ENST00000549162 FAM69CQ0P6D2 419 aa7.19□□□□□ -1.26
SCAF11-212ENST00000549162 EDC4Q6P2E9 1401 aaKnown RBP7.18□□□□□ -1.26
SCAF11-212ENST00000549162 TESK2Q96S53 571 aa7.18□□□□□ -1.26
SCAF11-212ENST00000549162 CASZ1Q86V15 1759 aa7.18□□□□□ -1.26
SCAF11-212ENST00000549162 ANKRD36BQ8N2N9 1353 aa7.17□□□□□ -1.26
SCAF11-212ENST00000549162 ECM2O94769 699 aaPredicted RBP7.17□□□□□ -1.26
SCAF11-212ENST00000549162 SBF2Q86WG5 1849 aa7.17□□□□□ -1.26
SCAF11-212ENST00000549162 ATAD2Q6PL18 1390 aa7.17□□□□□ -1.26
SCAF11-212ENST00000549162 CCDC7Q96M83 1385 aa7.17□□□□□ -1.26
SCAF11-212ENST00000549162 NGEFQ8N5V2 710 aa7.16□□□□□ -1.26
SCAF11-212ENST00000549162 KDRP35968 1356 aa7.16□□□□□ -1.26
SCAF11-212ENST00000549162 DDX60Q8IY21 1712 aaKnown RBP7.15□□□□□ -1.26
SCAF11-212ENST00000549162 ANKRD36CQ5JPF3 1778 aa7.15□□□□□ -1.26
SCAF11-212ENST00000549162 C1orf167Q5SNV9 1468 aa7.15□□□□□ -1.26
SCAF11-212ENST00000549162 RGL2O15211 777 aa7.14□□□□□ -1.27
SCAF11-212ENST00000549162 A0A1B0GUL6 1792 aa7.14□□□□□ -1.27
SCAF11-212ENST00000549162 AFAP1Q8N556 730 aa7.14□□□□□ -1.27
SCAF11-212ENST00000549162 CPDO75976 1380 aa7.14□□□□□ -1.27
SCAF11-212ENST00000549162 NRXN2Q9P2S2 1712 aa7.14□□□□□ -1.27
SCAF11-212ENST00000549162 CCER2I3L3R5 266 aa7.13□□□□□ -1.27
SCAF11-212ENST00000549162 KLHL34Q8N239 644 aa7.13□□□□□ -1.27
SCAF11-212ENST00000549162 TNS1Q9HBL0 1735 aaKnown RBP7.13□□□□□ -1.27
SCAF11-212ENST00000549162 TOGARAM1Q9Y4F4 1720 aa7.12□□□□□ -1.27
SCAF11-212ENST00000549162 KIF13BQ9NQT8 1826 aa7.12□□□□□ -1.27
SCAF11-212ENST00000549162 USP19O94966 1318 aa7.12□□□□□ -1.27
SCAF11-212ENST00000549162 DLEC1Q9Y238 1755 aa7.12□□□□□ -1.27
SCAF11-212ENST00000549162 ARAP2Q8WZ64 1704 aa7.11□□□□□ -1.27
SCAF11-212ENST00000549162 USP47Q96K76 1375 aa7.11□□□□□ -1.27
SCAF11-212ENST00000549162 PLEKHG3A1L390 1219 aa7.11□□□□□ -1.27
SCAF11-212ENST00000549162 LRP5O75197 1615 aa7.11□□□□□ -1.27
SCAF11-212ENST00000549162 HDGFP51858 240 aaKnown RBP7.1□□□□□ -1.27
SCAF11-212ENST00000549162 TJP1Q07157 1748 aa7.1□□□□□ -1.27
SCAF11-212ENST00000549162 VGFO15240 615 aaPredicted RBP7.1□□□□□ -1.27
SCAF11-212ENST00000549162 TAF1LQ8IZX4 1826 aa7.09□□□□□ -1.27
SCAF11-212ENST00000549162 SCN7AQ01118 1682 aa7.09□□□□□ -1.27
SCAF11-212ENST00000549162 P3H3Q8IVL6 736 aa7.09□□□□□ -1.27
SCAF11-212ENST00000549162 RGPD5Q99666 1765 aa7.09□□□□□ -1.28
SCAF11-212ENST00000549162 USP6P35125 1406 aa7.09□□□□□ -1.28
SCAF11-212ENST00000549162 LRRC37AA6NMS7 1700 aa7.09□□□□□ -1.28
SCAF11-212ENST00000549162 ZNF646O15015 1829 aaPredicted RBP7.09□□□□□ -1.28
SCAF11-212ENST00000549162 PER1O15534 1290 aaPredicted RBP7.08□□□□□ -1.28
SCAF11-212ENST00000549162 TONSLQ96HA7 1378 aa7.07□□□□□ -1.28
SCAF11-212ENST00000549162 DMRT2Q9Y5R5 561 aa7.07□□□□□ -1.28
SCAF11-212ENST00000549162 DISP2A7MBM2 1401 aa7.06□□□□□ -1.28
SCAF11-212ENST00000549162 TTC21AQ8NDW8 1320 aa7.06□□□□□ -1.28
SCAF11-212ENST00000549162 CYB5RLQ6IPT4 315 aa7.06□□□□□ -1.28
SCAF11-212ENST00000549162 ITGB4P16144 1822 aa7.06□□□□□ -1.28
SCAF11-212ENST00000549162 CHGAP10645 457 aaKnown RBP7.05□□□□□ -1.28
SCAF11-212ENST00000549162 NPM2Q86SE8 214 aaKnown RBP7.05□□□□□ -1.28
SCAF11-212ENST00000549162 RGPD2P0DJD1 1756 aa7.05□□□□□ -1.28
SCAF11-212ENST00000549162 MKRN4PQ13434 485 aaPredicted RBP7.05□□□□□ -1.28
SCAF11-212ENST00000549162 NBPF8Q3BBV2 869 aa7.05□□□□□ -1.28
SCAF11-212ENST00000549162 SOS1Q07889 1333 aaPredicted RBP7.05□□□□□ -1.28
SCAF11-212ENST00000549162 CDCA8Q53HL2 280 aa7.04□□□□□ -1.28
SCAF11-212ENST00000549162 PXDNLA1KZ92 1463 aa7.04□□□□□ -1.28
SCAF11-212ENST00000549162 RNF123Q5XPI4 1314 aa7.04□□□□□ -1.28
SCAF11-212ENST00000549162 METP08581 1390 aa7.04□□□□□ -1.28
SCAF11-212ENST00000549162 TNS3Q68CZ2 1445 aa7.03□□□□□ -1.28
SCAF11-212ENST00000549162 NSD3Q9BZ95 1437 aa7.03□□□□□ -1.28
SCAF11-212ENST00000549162 CFAP65Q6ZU64 1925 aaKnown RBP7.03□□□□□ -1.28
SCAF11-212ENST00000549162 JCADQ9P266 1359 aa7.03□□□□□ -1.28
SCAF11-212ENST00000549162 SPOCK2Q92563 424 aa7.03□□□□□ -1.28
SCAF11-212ENST00000549162 L3MBTL2Q969R5 705 aa7.02□□□□□ -1.29
SCAF11-212ENST00000549162 ROBO2Q9HCK4 1378 aa7.02□□□□□ -1.29
SCAF11-212ENST00000549162 KCNA6P17658 529 aa7.02□□□□□ -1.29
SCAF11-212ENST00000549162 THEMISQ8N1K5 641 aaPredicted RBP7.02□□□□□ -1.29
SCAF11-212ENST00000549162 DISP3Q9P2K9 1392 aa7.02□□□□□ -1.29
SCAF11-212ENST00000549162 RAPGEF3O95398 923 aa7.02□□□□□ -1.29
SCAF11-212ENST00000549162 IDI1Q13907 227 aa7.02□□□□□ -1.29
SCAF11-212ENST00000549162 ZNF219Q9P2Y4 722 aaPredicted RBP7.02□□□□□ -1.29
SCAF11-212ENST00000549162 RRP7BPQ9NSQ0 103 aa7.01□□□□□ -1.29
SCAF11-212ENST00000549162 ARHGEF10O15013 1369 aa7.01□□□□□ -1.29
SCAF11-212ENST00000549162 SLIT2O94813 1529 aa7□□□□□ -1.29
SCAF11-212ENST00000549162 KDM4FA0A1W2PPD8 638 aa7□□□□□ -1.29
SCAF11-212ENST00000549162 SAMD1Q6SPF0 538 aaPredicted RBP7□□□□□ -1.29
SCAF11-212ENST00000549162 CCDC27Q2M243 656 aa7□□□□□ -1.29
SCAF11-212ENST00000549162 KIF3BO15066 747 aa6.99□□□□□ -1.29
SCAF11-212ENST00000549162 BRPF1P55201 1214 aaPredicted RBP6.99□□□□□ -1.29
SCAF11-212ENST00000549162 ZNF521Q96K83 1311 aa6.99□□□□□ -1.29
SCAF11-212ENST00000549162 TNS2Q63HR2 1409 aa6.98□□□□□ -1.29
SCAF11-212ENST00000549162 ADGRF5Q8IZF2 1346 aa6.98□□□□□ -1.29
SCAF11-212ENST00000549162 PSME4Q14997 1843 aa6.98□□□□□ -1.29
SCAF11-212ENST00000549162 RALBP1Q15311 655 aa6.98□□□□□ -1.29
SCAF11-212ENST00000549162 BABAM1Q9NWV8 329 aa6.98□□□□□ -1.29
SCAF11-212ENST00000549162 MSH5O43196 834 aa6.97□□□□□ -1.29
SCAF11-212ENST00000549162 RIC1Q4ADV7 1423 aa6.97□□□□□ -1.29
SCAF11-212ENST00000549162 COL15A1P39059 1388 aa6.97□□□□□ -1.29
SCAF11-212ENST00000549162 TRHP20396 242 aaPredicted RBP6.97□□□□□ -1.29
SCAF11-212ENST00000549162 SPEF2Q9C093 1822 aa6.96□□□□□ -1.29
SCAF11-212ENST00000549162 COL5A2P05997 1499 aaPredicted RBP6.96□□□□□ -1.29
SCAF11-212ENST00000549162 LTBP1Q14766 1721 aa6.96□□□□□ -1.29
SCAF11-212ENST00000549162 FAM50AQ14320 339 aaKnown RBP6.96□□□□□ -1.3
SCAF11-212ENST00000549162 TRMT2AQ8IZ69 625 aaKnown RBP6.96□□□□□ -1.3
SCAF11-212ENST00000549162 KIF7Q2M1P5 1343 aa6.96□□□□□ -1.3
SCAF11-212ENST00000549162 SOS2Q07890 1332 aaPredicted RBP6.95□□□□□ -1.3
SCAF11-212ENST00000549162 HEG1Q9ULI3 1381 aa6.95□□□□□ -1.3
SCAF11-212ENST00000549162 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms