RNA–Protein interactions for RNA: ENST00000524602.5

CHD7-202, Transcript of chromodomain helicase DNA binding protein 7, humanhuman

TSL 1 (best) BASIC

Gene CHD7, Length 3,456 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD7-202ENST00000524602 KIF20BQ96Q89 1820 aa10.62□□□□□ -0.71
CHD7-202ENST00000524602 PNNQ9H307 717 aaKnown RBP10.62□□□□□ -0.71
CHD7-202ENST00000524602 TERF2IPQ9NYB0 399 aa10.62□□□□□ -0.71
CHD7-202ENST00000524602 PPP6R1Q9UPN7 881 aa10.62□□□□□ -0.71
CHD7-202ENST00000524602 CDC42BPGQ6DT37 1551 aa10.62□□□□□ -0.71
CHD7-202ENST00000524602 BECN1Q14457 450 aa10.61□□□□□ -0.71
CHD7-202ENST00000524602 USP19O94966 1318 aa10.61□□□□□ -0.71
CHD7-202ENST00000524602 NLRP1Q9C000 1473 aa10.61□□□□□ -0.71
CHD7-202ENST00000524602 GSE1Q14687 1217 aa10.61□□□□□ -0.71
CHD7-202ENST00000524602 MVPQ14764 893 aaKnown RBP10.61□□□□□ -0.71
CHD7-202ENST00000524602 ZKSCAN2Q63HK3 967 aa10.61□□□□□ -0.71
CHD7-202ENST00000524602 CABP2Q9NPB3 220 aa10.61□□□□□ -0.71
CHD7-202ENST00000524602 PLEKHF1Q96S99 279 aa10.61□□□□□ -0.71
CHD7-202ENST00000524602 SPATA31D1Q6ZQQ2 1576 aa10.61□□□□□ -0.71
CHD7-202ENST00000524602 YTHDC2Q9H6S0 1430 aaKnown RBP10.6□□□□□ -0.71
CHD7-202ENST00000524602 RLBP1P12271 317 aa10.6□□□□□ -0.71
CHD7-202ENST00000524602 UPF2Q9HAU5 1272 aaKnown RBP10.6□□□□□ -0.71
CHD7-202ENST00000524602 CD163L1Q9NR16 1453 aa10.6□□□□□ -0.71
CHD7-202ENST00000524602 SLC4A3P48751 1232 aa10.6□□□□□ -0.71
CHD7-202ENST00000524602 PCDHB15Q9Y5E8 787 aa10.6□□□□□ -0.71
CHD7-202ENST00000524602 PNPLA6Q8IY17 1366 aa10.59□□□□□ -0.71
CHD7-202ENST00000524602 DLC1Q96QB1 1528 aa10.59□□□□□ -0.71
CHD7-202ENST00000524602 SRPK2P78362 688 aaKnown RBP10.59□□□□□ -0.71
CHD7-202ENST00000524602 DZIP1LQ8IYY4 767 aaKnown RBP10.59□□□□□ -0.71
CHD7-202ENST00000524602 ALKQ9UM73 1620 aa10.59□□□□□ -0.71
CHD7-202ENST00000524602 STAG3Q9UJ98 1225 aa10.59□□□□□ -0.71
CHD7-202ENST00000524602 TMPOP42166 694 aaKnown RBP10.58□□□□□ -0.72
CHD7-202ENST00000524602 FTSJ3Q8IY81 847 aaKnown RBP10.58□□□□□ -0.72
CHD7-202ENST00000524602 PDZRN3Q9UPQ7 1066 aa10.57□□□□□ -0.72
CHD7-202ENST00000524602 A2ML1A8K2U0 1454 aa10.57□□□□□ -0.72
CHD7-202ENST00000524602 HDAC1Q13547 482 aaPredicted RBP10.57□□□□□ -0.72
CHD7-202ENST00000524602 HDGFL2Q7Z4V5 671 aaPredicted RBP10.57□□□□□ -0.72
CHD7-202ENST00000524602 STK26Q9P289 416 aa10.57□□□□□ -0.72
CHD7-202ENST00000524602 DDX19BQ9UMR2 479 aa10.57□□□□□ -0.72
CHD7-202ENST00000524602 FYB1O15117 783 aa10.57□□□□□ -0.72
CHD7-202ENST00000524602 ATP7BP35670 1465 aa10.56□□□□□ -0.72
CHD7-202ENST00000524602 SAFB2Q14151 953 aaKnown RBP eCLIP10.56□□□□□ -0.72
CHD7-202ENST00000524602 TBC1D32Q96NH3 1257 aa10.56□□□□□ -0.72
CHD7-202ENST00000524602 TRIM35Q9UPQ4 493 aa10.56□□□□□ -0.72
CHD7-202ENST00000524602 BCL2L13Q9BXK5 485 aa10.56□□□□□ -0.72
CHD7-202ENST00000524602 KIF16BQ96L93 1317 aa10.56□□□□□ -0.72
CHD7-202ENST00000524602 ZNF428Q96B54 188 aa10.56□□□□□ -0.72
CHD7-202ENST00000524602 PRAM1Q96QH2 718 aa10.56□□□□□ -0.72
CHD7-202ENST00000524602 SMC4Q9NTJ3 1288 aa10.56□□□□□ -0.72
CHD7-202ENST00000524602 POGKQ9P215 609 aa10.56□□□□□ -0.72
CHD7-202ENST00000524602 U2SURPO15042 1029 aaKnown RBP10.55□□□□□ -0.72
CHD7-202ENST00000524602 GGNBP2Q9H3C7 697 aa10.55□□□□□ -0.72
CHD7-202ENST00000524602 ESF1Q9H501 851 aaKnown RBP10.55□□□□□ -0.72
CHD7-202ENST00000524602 DIAPH1O60610 1272 aaKnown RBP10.55□□□□□ -0.72
CHD7-202ENST00000524602 SEC24BO95487 1268 aa10.55□□□□□ -0.72
CHD7-202ENST00000524602 ALDH1L2Q3SY69 923 aa10.55□□□□□ -0.72
CHD7-202ENST00000524602 ATF7IPQ6VMQ6 1270 aa10.55□□□□□ -0.72
CHD7-202ENST00000524602 TNNQ9UQP3 1299 aa10.55□□□□□ -0.72
CHD7-202ENST00000524602 PPIP5K1Q6PFW1 1433 aa10.55□□□□□ -0.72
CHD7-202ENST00000524602 IPO8O15397 1037 aaKnown RBP10.54□□□□□ -0.72
CHD7-202ENST00000524602 EXOSC9Q06265 439 aaKnown RBP10.54□□□□□ -0.72
CHD7-202ENST00000524602 FCHSD2O94868 740 aa10.54□□□□□ -0.72
CHD7-202ENST00000524602 SETD1AO15047 1707 aaKnown RBP10.54□□□□□ -0.72
CHD7-202ENST00000524602 TRIM27P14373 513 aa10.54□□□□□ -0.72
CHD7-202ENST00000524602 BRPF1P55201 1214 aaPredicted RBP10.54□□□□□ -0.72
CHD7-202ENST00000524602 RIMS2Q9UQ26 1411 aa10.53□□□□□ -0.72
CHD7-202ENST00000524602 LRRC7Q96NW7 1537 aa10.53□□□□□ -0.72
CHD7-202ENST00000524602 TSR2Q969E8 191 aaKnown RBP10.53□□□□□ -0.72
CHD7-202ENST00000524602 MINK1Q8N4C8 1332 aaPredicted RBP10.53□□□□□ -0.72
CHD7-202ENST00000524602 SSH1Q8WYL5 1049 aa10.53□□□□□ -0.72
CHD7-202ENST00000524602 FAM135BQ49AJ0 1406 aa10.53□□□□□ -0.72
CHD7-202ENST00000524602 FRAT2O75474 233 aaPredicted RBP10.53□□□□□ -0.72
CHD7-202ENST00000524602 RIPK4P57078 832 aa10.53□□□□□ -0.72
CHD7-202ENST00000524602 CDK19Q9BWU1 502 aa10.52□□□□□ -0.72
CHD7-202ENST00000524602 SMC5Q8IY18 1101 aa10.52□□□□□ -0.73
CHD7-202ENST00000524602 CHMP4BQ9H444 224 aaKnown RBP10.52□□□□□ -0.73
CHD7-202ENST00000524602 CALD1Q05682 793 aaKnown RBP10.52□□□□□ -0.73
CHD7-202ENST00000524602 ITPRIPQ8IWB1 547 aa10.51□□□□□ -0.73
CHD7-202ENST00000524602 PKNOX2Q96KN3 472 aa10.51□□□□□ -0.73
CHD7-202ENST00000524602 NRXN3Q9Y4C0 1643 aa10.51□□□□□ -0.73
CHD7-202ENST00000524602 ANTXR1Q9H6X2 564 aa10.5□□□□□ -0.73
CHD7-202ENST00000524602 ZBTB40Q9NUA8 1239 aa10.5□□□□□ -0.73
CHD7-202ENST00000524602 NOB1Q9ULX3 412 aaKnown RBP10.5□□□□□ -0.73
CHD7-202ENST00000524602 MAP2P11137 1827 aaKnown RBP10.5□□□□□ -0.73
CHD7-202ENST00000524602 BRPF3Q9ULD4 1205 aa10.5□□□□□ -0.73
CHD7-202ENST00000524602 TNRQ92752 1358 aa10.5□□□□□ -0.73
CHD7-202ENST00000524602 EDC4Q6P2E9 1401 aaKnown RBP10.5□□□□□ -0.73
CHD7-202ENST00000524602 KNDC1Q76NI1 1749 aa10.5□□□□□ -0.73
CHD7-202ENST00000524602 CDK12Q9NYV4 1490 aaPredicted RBP10.49□□□□□ -0.73
CHD7-202ENST00000524602 RSPH6AQ9H0K4 717 aa10.49□□□□□ -0.73
CHD7-202ENST00000524602 CABP1Q9NZU7 370 aa10.49□□□□□ -0.73
CHD7-202ENST00000524602 UBR1Q8IWV7 1749 aa10.49□□□□□ -0.73
CHD7-202ENST00000524602 ARHGAP45Q92619 1136 aa10.49□□□□□ -0.73
CHD7-202ENST00000524602 AATKQ6ZMQ8 1374 aa10.49□□□□□ -0.73
CHD7-202ENST00000524602 TMEM57Q8N5G2 664 aa10.48□□□□□ -0.73
CHD7-202ENST00000524602 TBC1D2Q9BYX2 928 aa10.48□□□□□ -0.73
CHD7-202ENST00000524602 PIK3R4Q99570 1358 aa10.48□□□□□ -0.73
CHD7-202ENST00000524602 CPSF1Q10570 1443 aaKnown RBP10.48□□□□□ -0.73
CHD7-202ENST00000524602 MON2Q7Z3U7 1717 aa10.48□□□□□ -0.73
CHD7-202ENST00000524602 PTCH1Q13635 1447 aa10.48□□□□□ -0.73
CHD7-202ENST00000524602 C22orf23Q9BZE7 217 aa10.48□□□□□ -0.73
CHD7-202ENST00000524602 POLKQ9UBT6 870 aa10.48□□□□□ -0.73
CHD7-202ENST00000524602 NUCB1Q02818 461 aa10.47□□□□□ -0.73
CHD7-202ENST00000524602 NFE2L2Q16236 605 aa10.47□□□□□ -0.73
CHD7-202ENST00000524602 IFT57Q9NWB7 429 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms