RNA–Protein interactions for RNA: ENST00000524602.5

CHD7-202, Transcript of chromodomain helicase DNA binding protein 7, humanhuman

TSL 1 (best) BASIC

Gene CHD7, Length 3,456 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD7-202ENST00000524602 NISCHQ9Y2I1 1504 aa17.3■□□□□ 0.36
CHD7-202ENST00000524602 CCDC180Q9P1Z9 1646 aa14.95□□□□□ -0.02
CHD7-202ENST00000524602 ZCCHC6Q5VYS8 1495 aaKnown RBP14.63□□□□□ -0.07
CHD7-202ENST00000524602 SHROOM4Q9ULL8 1493 aa14.48□□□□□ -0.09
CHD7-202ENST00000524602 DCAF8L2P0C7V8 631 aa14.31□□□□□ -0.12
CHD7-202ENST00000524602 DCAF1Q9Y4B6 1507 aa14.29□□□□□ -0.12
CHD7-202ENST00000524602 SUPT5HO00267 1087 aaKnown RBP14.23□□□□□ -0.13
CHD7-202ENST00000524602 ABCC9O60706 1549 aa14.02□□□□□ -0.17
CHD7-202ENST00000524602 MYO15BQ96JP2 1530 aa13.97□□□□□ -0.17
CHD7-202ENST00000524602 CHIC1Q5VXU3 224 aa13.95□□□□□ -0.18
CHD7-202ENST00000524602 SCRIBQ14160 1630 aa13.87□□□□□ -0.19
CHD7-202ENST00000524602 NACADO15069 1562 aa13.86□□□□□ -0.19
CHD7-202ENST00000524602 RB1CC1Q8TDY2 1594 aa13.7□□□□□ -0.22
CHD7-202ENST00000524602 RSF1Q96T23 1441 aaPredicted RBP13.62□□□□□ -0.23
CHD7-202ENST00000524602 HRCP23327 699 aa13.6□□□□□ -0.23
CHD7-202ENST00000524602 UNC13AQ9UPW8 1703 aa13.53□□□□□ -0.24
CHD7-202ENST00000524602 CECR2Q9BXF3 1484 aa13.48□□□□□ -0.25
CHD7-202ENST00000524602 PCGF6Q9BYE7 350 aa13.47□□□□□ -0.25
CHD7-202ENST00000524602 LOC105371045A0A1W2PR82 267 aa13.43□□□□□ -0.26
CHD7-202ENST00000524602 MROH2BQ7Z745 1585 aa13.41□□□□□ -0.26
CHD7-202ENST00000524602 TRIM41Q8WV44 630 aa13.35□□□□□ -0.27
CHD7-202ENST00000524602 WIZO95785 1651 aa13.34□□□□□ -0.27
CHD7-202ENST00000524602 TRIM26Q12899 539 aaPredicted RBP13.34□□□□□ -0.27
CHD7-202ENST00000524602 BICRAQ9NZM4 1560 aa13.33□□□□□ -0.28
CHD7-202ENST00000524602 BAZ1AQ9NRL2 1556 aaPredicted RBP13.33□□□□□ -0.28
CHD7-202ENST00000524602 PABPN1Q86U42 306 aaKnown RBP eCLIP13.28□□□□□ -0.28
CHD7-202ENST00000524602 SMARCA4P51532 1647 aa13.27□□□□□ -0.29
CHD7-202ENST00000524602 EIF4G1Q04637 1599 aaKnown RBP13.22□□□□□ -0.29
CHD7-202ENST00000524602 TOP2AP11388 1531 aaKnown RBP13.17□□□□□ -0.3
CHD7-202ENST00000524602 ZEB1P37275 1124 aaPredicted RBP13.15□□□□□ -0.3
CHD7-202ENST00000524602 PPARGC1BQ86YN6 1023 aaKnown RBP13.14□□□□□ -0.31
CHD7-202ENST00000524602 FAM9AQ8IZU1 332 aaPredicted RBP13.09□□□□□ -0.31
CHD7-202ENST00000524602 SMARCA2P51531 1590 aa13.07□□□□□ -0.32
CHD7-202ENST00000524602 PEG3Q9GZU2 1588 aa13.05□□□□□ -0.32
CHD7-202ENST00000524602 CCDC88BA6NC98 1476 aa13.04□□□□□ -0.32
CHD7-202ENST00000524602 ATAD2BQ9ULI0 1458 aa12.98□□□□□ -0.33
CHD7-202ENST00000524602 EEA1Q15075 1411 aa12.96□□□□□ -0.33
CHD7-202ENST00000524602 ABCC8Q09428 1581 aa12.96□□□□□ -0.34
CHD7-202ENST00000524602 EHMT2Q96KQ7 1210 aa12.94□□□□□ -0.34
CHD7-202ENST00000524602 WRNQ14191 1432 aaPredicted RBP eCLIP12.93□□□□□ -0.34
CHD7-202ENST00000524602 BAZ1BQ9UIG0 1483 aaKnown RBP12.92□□□□□ -0.34
CHD7-202ENST00000524602 TNIKQ9UKE5 1360 aa12.87□□□□□ -0.35
CHD7-202ENST00000524602 CEP162Q5TB80 1403 aa12.85□□□□□ -0.35
CHD7-202ENST00000524602 SOGA1O94964 1423 aa12.83□□□□□ -0.36
CHD7-202ENST00000524602 GOLGA3Q08378 1498 aa12.8□□□□□ -0.36
CHD7-202ENST00000524602 HMGXB3Q12766 1538 aa12.8□□□□□ -0.36
CHD7-202ENST00000524602 CSRNP3Q8WYN3 585 aa12.8□□□□□ -0.36
CHD7-202ENST00000524602 NCAPD3P42695 1498 aa12.79□□□□□ -0.36
CHD7-202ENST00000524602 PELP1Q8IZL8 1130 aaKnown RBP12.77□□□□□ -0.36
CHD7-202ENST00000524602 KIF21BO75037 1637 aa12.77□□□□□ -0.37
CHD7-202ENST00000524602 CEP164Q9UPV0 1460 aa12.74□□□□□ -0.37
CHD7-202ENST00000524602 RUSC2Q8N2Y8 1516 aa12.74□□□□□ -0.37
CHD7-202ENST00000524602 SYNJ1O43426 1573 aa12.74□□□□□ -0.37
CHD7-202ENST00000524602 CCER1Q8TC90 406 aaPredicted RBP12.7□□□□□ -0.38
CHD7-202ENST00000524602 UBTFP17480 764 aaKnown RBP12.68□□□□□ -0.38
CHD7-202ENST00000524602 CC2D2AQ9P2K1 1620 aa12.67□□□□□ -0.38
CHD7-202ENST00000524602 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.67□□□□□ -0.38
CHD7-202ENST00000524602 TOP2BQ02880 1626 aa12.65□□□□□ -0.38
CHD7-202ENST00000524602 BIVM-ERCC5R4GMW8 1640 aa12.64□□□□□ -0.39
CHD7-202ENST00000524602 CLIP1P30622 1438 aa12.6□□□□□ -0.39
CHD7-202ENST00000524602 CFTRP13569 1480 aa12.59□□□□□ -0.39
CHD7-202ENST00000524602 VPS8Q8N3P4 1428 aa12.59□□□□□ -0.39
CHD7-202ENST00000524602 ERICH3Q5RHP9 1530 aa12.57□□□□□ -0.4
CHD7-202ENST00000524602 PRDM2Q13029 1718 aa12.57□□□□□ -0.4
CHD7-202ENST00000524602 RAPGEF2Q9Y4G8 1499 aa12.55□□□□□ -0.4
CHD7-202ENST00000524602 CUX1P39880 1505 aa12.52□□□□□ -0.41
CHD7-202ENST00000524602 TTBK1Q5TCY1 1321 aaPredicted RBP12.51□□□□□ -0.41
CHD7-202ENST00000524602 CADPSQ9ULU8 1353 aa12.5□□□□□ -0.41
CHD7-202ENST00000524602 PRXQ9BXM0 1461 aa12.5□□□□□ -0.41
CHD7-202ENST00000524602 DIEXFQ68CQ4 756 aaKnown RBP12.49□□□□□ -0.41
CHD7-202ENST00000524602 SCAF1Q9H7N4 1312 aaKnown RBP12.48□□□□□ -0.41
CHD7-202ENST00000524602 APLP2Q06481 763 aa12.47□□□□□ -0.41
CHD7-202ENST00000524602 KIF27Q86VH2 1401 aa12.43□□□□□ -0.42
CHD7-202ENST00000524602 ZNF316A6NFI3 1004 aaPredicted RBP12.42□□□□□ -0.42
CHD7-202ENST00000524602 ACIN1Q9UKV3 1341 aaKnown RBP12.42□□□□□ -0.42
CHD7-202ENST00000524602 ARAP1Q96P48 1450 aa12.41□□□□□ -0.42
CHD7-202ENST00000524602 CENPBP07199 599 aaPredicted RBP12.4□□□□□ -0.42
CHD7-202ENST00000524602 NESP48681 1621 aa12.39□□□□□ -0.43
CHD7-202ENST00000524602 FANCD2Q9BXW9 1451 aa12.39□□□□□ -0.43
CHD7-202ENST00000524602 CLSPNQ9HAW4 1339 aa12.38□□□□□ -0.43
CHD7-202ENST00000524602 HNRNPUL2Q1KMD3 747 aaKnown RBP12.37□□□□□ -0.43
CHD7-202ENST00000524602 DNAJC5BQ9UF47 199 aa12.35□□□□□ -0.43
CHD7-202ENST00000524602 FGD5Q6ZNL6 1462 aa12.34□□□□□ -0.43
CHD7-202ENST00000524602 LAMC3Q9Y6N6 1575 aa12.33□□□□□ -0.44
CHD7-202ENST00000524602 NEUROD1Q13562 356 aa12.33□□□□□ -0.44
CHD7-202ENST00000524602 RRBP1Q9P2E9 1410 aaKnown RBP12.32□□□□□ -0.44
CHD7-202ENST00000524602 CUX2O14529 1486 aa12.31□□□□□ -0.44
CHD7-202ENST00000524602 DNMBPQ6XZF7 1577 aa12.3□□□□□ -0.44
CHD7-202ENST00000524602 ARHGAP35Q9NRY4 1499 aa12.29□□□□□ -0.44
CHD7-202ENST00000524602 MAP3K1Q13233 1512 aa12.29□□□□□ -0.44
CHD7-202ENST00000524602 MYT1Q01538 1121 aa12.29□□□□□ -0.44
CHD7-202ENST00000524602 TOPBP1Q92547 1522 aa12.28□□□□□ -0.44
CHD7-202ENST00000524602 RANGAP1P46060 587 aaPredicted RBP12.27□□□□□ -0.45
CHD7-202ENST00000524602 DHX57Q6P158 1386 aaKnown RBP12.26□□□□□ -0.45
CHD7-202ENST00000524602 POLA1P09884 1462 aaPredicted RBP12.25□□□□□ -0.45
CHD7-202ENST00000524602 IGF1RP08069 1367 aa12.24□□□□□ -0.45
CHD7-202ENST00000524602 KIF21AQ7Z4S6 1674 aa12.24□□□□□ -0.45
CHD7-202ENST00000524602 KANK4Q5T7N3 995 aaPredicted RBP12.24□□□□□ -0.45
CHD7-202ENST00000524602 RAD54L2Q9Y4B4 1467 aa12.24□□□□□ -0.45
CHD7-202ENST00000524602 URB2Q14146 1524 aaKnown RBP12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 158.4 ms