RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 MLECQ14165 292 aa19.19■□□□□ 0.66
NUP54-217ENST00000514987 CDC42BPGQ6DT37 1551 aa19.18■□□□□ 0.66
NUP54-217ENST00000514987 TECPR2O15040 1411 aa19.18■□□□□ 0.66
NUP54-217ENST00000514987 TNRQ92752 1358 aa19.17■□□□□ 0.66
NUP54-217ENST00000514987 DIAPH1O60610 1272 aaKnown RBP19.17■□□□□ 0.66
NUP54-217ENST00000514987 PLEKHF1Q96S99 279 aa19.17■□□□□ 0.66
NUP54-217ENST00000514987 U2SURPO15042 1029 aaKnown RBP19.15■□□□□ 0.66
NUP54-217ENST00000514987 SENP3Q9H4L4 574 aaPredicted RBP19.15■□□□□ 0.66
NUP54-217ENST00000514987 EDC4Q6P2E9 1401 aaKnown RBP19.15■□□□□ 0.66
NUP54-217ENST00000514987 WASLO00401 505 aaPredicted RBP19.15■□□□□ 0.66
NUP54-217ENST00000514987 TMPOP42166 694 aaKnown RBP19.15■□□□□ 0.66
NUP54-217ENST00000514987 CLUAP1Q96AJ1 413 aa19.15■□□□□ 0.66
NUP54-217ENST00000514987 CPS1P31327 1500 aa19.14■□□□□ 0.65
NUP54-217ENST00000514987 WAPLQ7Z5K2 1190 aa19.14■□□□□ 0.65
NUP54-217ENST00000514987 CPSF1Q10570 1443 aaKnown RBP19.14■□□□□ 0.65
NUP54-217ENST00000514987 FCHSD2O94868 740 aa19.12■□□□□ 0.65
NUP54-217ENST00000514987 PMFBP1Q8TBY8 1022 aa19.12■□□□□ 0.65
NUP54-217ENST00000514987 DDRGK1Q96HY6 314 aa19.12■□□□□ 0.65
NUP54-217ENST00000514987 UBR1Q8IWV7 1749 aa19.12■□□□□ 0.65
NUP54-217ENST00000514987 FAM161AQ3B820 660 aa19.11■□□□□ 0.65
NUP54-217ENST00000514987 NEFMP07197 916 aa19.1■□□□□ 0.65
NUP54-217ENST00000514987 METP08581 1390 aa19.1■□□□□ 0.65
NUP54-217ENST00000514987 TMEM2Q9UHN6 1383 aa19.1■□□□□ 0.65
NUP54-217ENST00000514987 PPIP5K1Q6PFW1 1433 aa19.1■□□□□ 0.65
NUP54-217ENST00000514987 FRAT1Q92837 279 aaPredicted RBP19.1■□□□□ 0.65
NUP54-217ENST00000514987 AATKQ6ZMQ8 1374 aa19.09■□□□□ 0.65
NUP54-217ENST00000514987 PANK1Q8TE04 598 aa19.09■□□□□ 0.65
NUP54-217ENST00000514987 TRIM35Q9UPQ4 493 aa19.09■□□□□ 0.65
NUP54-217ENST00000514987 COG6Q9Y2V7 657 aa19.09■□□□□ 0.65
NUP54-217ENST00000514987 MON2Q7Z3U7 1717 aa19.08■□□□□ 0.65
NUP54-217ENST00000514987 ZNF692Q9BU19 519 aaPredicted RBP19.08■□□□□ 0.65
NUP54-217ENST00000514987 PAK3O75914 559 aaPredicted RBP19.07■□□□□ 0.64
NUP54-217ENST00000514987 NPM2Q86SE8 214 aaKnown RBP19.07■□□□□ 0.64
NUP54-217ENST00000514987 CCDC61Q9Y6R9 512 aa19.07■□□□□ 0.64
NUP54-217ENST00000514987 ZKSCAN2Q63HK3 967 aa19.06■□□□□ 0.64
NUP54-217ENST00000514987 NUDT16Q96DE0 195 aaKnown RBP19.06■□□□□ 0.64
NUP54-217ENST00000514987 POLKQ9UBT6 870 aa19.06■□□□□ 0.64
NUP54-217ENST00000514987 CDK12Q9NYV4 1490 aaPredicted RBP19.06■□□□□ 0.64
NUP54-217ENST00000514987 AKAP12Q02952 1782 aa19.06■□□□□ 0.64
NUP54-217ENST00000514987 ITSN1Q15811 1721 aa19.06■□□□□ 0.64
NUP54-217ENST00000514987 RIPK4P57078 832 aa19.06■□□□□ 0.64
NUP54-217ENST00000514987 CALD1Q05682 793 aaKnown RBP19.06■□□□□ 0.64
NUP54-217ENST00000514987 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.06■□□□□ 0.642e-11■■□□□ 11.8
NUP54-217ENST00000514987 MAP2P11137 1827 aaKnown RBP19.05■□□□□ 0.64
NUP54-217ENST00000514987 TXNDC2Q86VQ3 553 aa19.05■□□□□ 0.64
NUP54-217ENST00000514987 PLEKHG1Q9ULL1 1385 aa19.04■□□□□ 0.64
NUP54-217ENST00000514987 IGHDP01880 384 aa19.04■□□□□ 0.64
NUP54-217ENST00000514987 ZNF428Q96B54 188 aa19.04■□□□□ 0.64
NUP54-217ENST00000514987 LRRC7Q96NW7 1537 aa19.04■□□□□ 0.64
NUP54-217ENST00000514987 EXOSC9Q06265 439 aaKnown RBP19.02■□□□□ 0.64
NUP54-217ENST00000514987 RSPH6AQ9H0K4 717 aa19.02■□□□□ 0.64
NUP54-217ENST00000514987 RWDD1Q9H446 243 aaPredicted RBP19.02■□□□□ 0.64
NUP54-217ENST00000514987 MVPQ14764 893 aaKnown RBP19.02■□□□□ 0.63
NUP54-217ENST00000514987 C8orf34Q49A92 452 aa19.02■□□□□ 0.63
NUP54-217ENST00000514987 SKAP1Q86WV1 359 aa19.02■□□□□ 0.63
NUP54-217ENST00000514987 DZIP1LQ8IYY4 767 aaKnown RBP19.02■□□□□ 0.63
NUP54-217ENST00000514987 COG3Q96JB2 828 aa19.02■□□□□ 0.63
NUP54-217ENST00000514987 C3P01024 1663 aa19.01■□□□□ 0.63
NUP54-217ENST00000514987 FTSJ3Q8IY81 847 aaKnown RBP19.01■□□□□ 0.63
NUP54-217ENST00000514987 SMC4Q9NTJ3 1288 aa19.01■□□□□ 0.63
NUP54-217ENST00000514987 ADAMTS13Q76LX8 1427 aa19.01■□□□□ 0.63
NUP54-217ENST00000514987 VIRMAQ69YN4 1812 aaKnown RBP19■□□□□ 0.63
NUP54-217ENST00000514987 IPO8O15397 1037 aaKnown RBP19■□□□□ 0.63
NUP54-217ENST00000514987 RGS3P49796 1198 aa19■□□□□ 0.63
NUP54-217ENST00000514987 ALDH1L2Q3SY69 923 aa19■□□□□ 0.63
NUP54-217ENST00000514987 RLBP1P12271 317 aa18.99■□□□□ 0.63
NUP54-217ENST00000514987 PRKAR2BP31323 418 aa18.99■□□□□ 0.63
NUP54-217ENST00000514987 NFE2L2Q16236 605 aa18.99■□□□□ 0.63
NUP54-217ENST00000514987 TSR2Q969E8 191 aaKnown RBP18.99■□□□□ 0.63
NUP54-217ENST00000514987 KIF16BQ96L93 1317 aa18.99■□□□□ 0.63
NUP54-217ENST00000514987 LMOD3Q0VAK6 560 aa18.98■□□□□ 0.63
NUP54-217ENST00000514987 BCL2L13Q9BXK5 485 aa18.98■□□□□ 0.63
NUP54-217ENST00000514987 PPM1GO15355 546 aaPredicted RBP18.98■□□□□ 0.63
NUP54-217ENST00000514987 IL13P35225 146 aa18.98■□□□□ 0.63
NUP54-217ENST00000514987 NME9Q86XW9 330 aa18.98■□□□□ 0.63
NUP54-217ENST00000514987 DDX19BQ9UMR2 479 aa18.98■□□□□ 0.63
NUP54-217ENST00000514987 EID1Q9Y6B2 187 aa18.98■□□□□ 0.63
NUP54-217ENST00000514987 TOPAZ1Q8N9V7 1692 aa18.97■□□□□ 0.63
NUP54-217ENST00000514987 ROBO2Q9HCK4 1378 aa18.96■□□□□ 0.63
NUP54-217ENST00000514987 BRPF1P55201 1214 aaPredicted RBP18.96■□□□□ 0.63
NUP54-217ENST00000514987 ATF7IPQ6VMQ6 1270 aa18.96■□□□□ 0.63
NUP54-217ENST00000514987 SSH1Q8WYL5 1049 aa18.96■□□□□ 0.63
NUP54-217ENST00000514987 PCDHB15Q9Y5E8 787 aa18.96■□□□□ 0.63
NUP54-217ENST00000514987 PLEKHG3A1L390 1219 aa18.95■□□□□ 0.62
NUP54-217ENST00000514987 SLIT1O75093 1534 aa18.95■□□□□ 0.62
NUP54-217ENST00000514987 ARHGAP23Q9P227 1491 aa18.94■□□□□ 0.62
NUP54-217ENST00000514987 GNAI1P63096 354 aa18.93■□□□□ 0.62
NUP54-217ENST00000514987 CHMP4BQ9H444 224 aaKnown RBP18.93■□□□□ 0.62
NUP54-217ENST00000514987 EMILIN1Q9Y6C2 1016 aa18.93■□□□□ 0.62
NUP54-217ENST00000514987 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.93■□□□□ 0.62
NUP54-217ENST00000514987 IFT57Q9NWB7 429 aa18.93■□□□□ 0.62
NUP54-217ENST00000514987 DAXXQ9UER7 740 aaPredicted RBP18.93■□□□□ 0.62
NUP54-217ENST00000514987 TNNQ9UQP3 1299 aa18.93■□□□□ 0.62
NUP54-217ENST00000514987 DIP2AQ14689 1571 aa18.93■□□□□ 0.62
NUP54-217ENST00000514987 NRKQ7Z2Y5 1582 aa18.93■□□□□ 0.62
NUP54-217ENST00000514987 PRR36Q9H6K5 1346 aa18.92■□□□□ 0.62
NUP54-217ENST00000514987 TRIM27P14373 513 aa18.92■□□□□ 0.62
NUP54-217ENST00000514987 HDAC1Q13547 482 aaPredicted RBP18.92■□□□□ 0.62
NUP54-217ENST00000514987 RTL5Q5HYW3 569 aaPredicted RBP18.92■□□□□ 0.62
NUP54-217ENST00000514987 TBX22Q9Y458 520 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms