RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 NPHP1O15259 732 aa6.82□□□□□ -1.32
SYNE1-220ENST00000471834 PLEKHF1Q96S99 279 aa6.82□□□□□ -1.32
SYNE1-220ENST00000471834 ATAD2Q6PL18 1390 aa6.82□□□□□ -1.32
SYNE1-220ENST00000471834 SALL3Q9BXA9 1300 aa6.82□□□□□ -1.32
SYNE1-220ENST00000471834 KLHL40Q2TBA0 621 aa6.82□□□□□ -1.32
SYNE1-220ENST00000471834 AATKQ6ZMQ8 1374 aa6.82□□□□□ -1.32
SYNE1-220ENST00000471834 ESPNB1AK53 854 aa6.82□□□□□ -1.32
SYNE1-220ENST00000471834 CHGAP10645 457 aaKnown RBP6.81□□□□□ -1.32
SYNE1-220ENST00000471834 NPATQ14207 1427 aa6.81□□□□□ -1.32
SYNE1-220ENST00000471834 EIF5BO60841 1220 aaKnown RBP6.81□□□□□ -1.32
SYNE1-220ENST00000471834 RLBP1P12271 317 aa6.81□□□□□ -1.32
SYNE1-220ENST00000471834 PTMSP20962 102 aa6.8□□□□□ -1.32
SYNE1-220ENST00000471834 RIPK4P57078 832 aa6.8□□□□□ -1.32
SYNE1-220ENST00000471834 PMFBP1Q8TBY8 1022 aa6.8□□□□□ -1.32
SYNE1-220ENST00000471834 CFAP74Q9C0B2 1584 aa6.8□□□□□ -1.32
SYNE1-220ENST00000471834 ALDH1L2Q3SY69 923 aa6.8□□□□□ -1.32
SYNE1-220ENST00000471834 GLI2P10070 1586 aa6.8□□□□□ -1.32
SYNE1-220ENST00000471834 PDCL3Q9H2J4 239 aa6.8□□□□□ -1.32
SYNE1-220ENST00000471834 RTL1A6NKG5 1358 aa6.8□□□□□ -1.32
SYNE1-220ENST00000471834 OSBPL3Q9H4L5 887 aa6.8□□□□□ -1.32
SYNE1-220ENST00000471834 ABCC4O15439 1325 aa6.8□□□□□ -1.32
SYNE1-220ENST00000471834 MYO5CQ9NQX4 1742 aa6.8□□□□□ -1.32
SYNE1-220ENST00000471834 MAP7D2Q96T17 732 aa6.8□□□□□ -1.32
SYNE1-220ENST00000471834 PTPRMP28827 1452 aa6.79□□□□□ -1.32
SYNE1-220ENST00000471834 TPM2P07951 284 aa6.79□□□□□ -1.32
SYNE1-220ENST00000471834 MVPQ14764 893 aaKnown RBP6.79□□□□□ -1.32
SYNE1-220ENST00000471834 UTP14CQ5TAP6 766 aaKnown RBP6.79□□□□□ -1.32
SYNE1-220ENST00000471834 GAS2L3Q86XJ1 694 aa6.79□□□□□ -1.32
SYNE1-220ENST00000471834 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.79□□□□□ -1.32
SYNE1-220ENST00000471834 SIRT1Q96EB6 747 aa6.79□□□□□ -1.32
SYNE1-220ENST00000471834 KIAA0232Q92628 1395 aa6.79□□□□□ -1.32
SYNE1-220ENST00000471834 NOL7Q9UMY1 257 aaKnown RBP6.79□□□□□ -1.32
SYNE1-220ENST00000471834 AGLP35573 1532 aa6.78□□□□□ -1.32
SYNE1-220ENST00000471834 SENP3-EIF4A1A0A087X0R7 540 aa6.78□□□□□ -1.32
SYNE1-220ENST00000471834 PLEKHG5O94827 1062 aa6.78□□□□□ -1.32
SYNE1-220ENST00000471834 SKOR2Q2VWA4 1001 aaPredicted RBP6.78□□□□□ -1.32
SYNE1-220ENST00000471834 MEX3CQ5U5Q3 659 aaKnown RBP6.78□□□□□ -1.32
SYNE1-220ENST00000471834 HSP90AA1P07900 732 aaKnown RBP6.77□□□□□ -1.32
SYNE1-220ENST00000471834 KRI1Q8N9T8 703 aaKnown RBP6.77□□□□□ -1.33
SYNE1-220ENST00000471834 EFCAB2Q5VUJ9 269 aa6.77□□□□□ -1.33
SYNE1-220ENST00000471834 TMEM87AQ8NBN3 555 aa6.77□□□□□ -1.33
SYNE1-220ENST00000471834 RUNDC1Q96C34 613 aa6.77□□□□□ -1.33
SYNE1-220ENST00000471834 POGZQ7Z3K3 1410 aa6.77□□□□□ -1.33
SYNE1-220ENST00000471834 FAM193AP78312 1265 aa6.77□□□□□ -1.33
SYNE1-220ENST00000471834 CUL4AQ13619 759 aa6.77□□□□□ -1.33
SYNE1-220ENST00000471834 ZBTB7CA1YPR0 619 aa6.77□□□□□ -1.33
SYNE1-220ENST00000471834 DDX11L8A8MPP1 907 aa6.77□□□□□ -1.33
SYNE1-220ENST00000471834 ZSCAN30Q86W11 494 aa6.77□□□□□ -1.33
SYNE1-220ENST00000471834 NEO1Q92859 1461 aa6.76□□□□□ -1.33
SYNE1-220ENST00000471834 BECN1Q14457 450 aa6.76□□□□□ -1.33
SYNE1-220ENST00000471834 ATP7BP35670 1465 aa6.76□□□□□ -1.33
SYNE1-220ENST00000471834 MTERF4Q7Z6M4 381 aaKnown RBP6.76□□□□□ -1.33
SYNE1-220ENST00000471834 KDM2AQ9Y2K7 1162 aa6.76□□□□□ -1.33
SYNE1-220ENST00000471834 PPLO60437 1756 aa6.76□□□□□ -1.33
SYNE1-220ENST00000471834 PLIN1O60240 522 aa6.76□□□□□ -1.33
SYNE1-220ENST00000471834 NRKQ7Z2Y5 1582 aa6.75□□□□□ -1.33
SYNE1-220ENST00000471834 APAF1O14727 1248 aa6.75□□□□□ -1.33
SYNE1-220ENST00000471834 NUCB1Q02818 461 aa6.75□□□□□ -1.33
SYNE1-220ENST00000471834 RWDD1Q9H446 243 aaPredicted RBP6.75□□□□□ -1.33
SYNE1-220ENST00000471834 PDZRN3Q9UPQ7 1066 aa6.75□□□□□ -1.33
SYNE1-220ENST00000471834 CRYBG1Q9Y4K1 1723 aa6.75□□□□□ -1.33
SYNE1-220ENST00000471834 KIDINS220Q9ULH0 1771 aa6.75□□□□□ -1.33
SYNE1-220ENST00000471834 ANKRD26Q9UPS8 1709 aa6.75□□□□□ -1.33
SYNE1-220ENST00000471834 BCAR3O75815 825 aa6.75□□□□□ -1.33
SYNE1-220ENST00000471834 ARHGAP5Q13017 1502 aa6.74□□□□□ -1.33
SYNE1-220ENST00000471834 TCP11L2Q8N4U5 519 aa6.74□□□□□ -1.33
SYNE1-220ENST00000471834 TRIM35Q9UPQ4 493 aa6.74□□□□□ -1.33
SYNE1-220ENST00000471834 GRPEL1Q9HAV7 217 aa6.74□□□□□ -1.33
SYNE1-220ENST00000471834 CCDC9Q9Y3X0 531 aaKnown RBP6.74□□□□□ -1.33
SYNE1-220ENST00000471834 KNSTRNQ9Y448 316 aa6.74□□□□□ -1.33
SYNE1-220ENST00000471834 TPRNQ4KMQ1 711 aa6.74□□□□□ -1.33
SYNE1-220ENST00000471834 SKAP1Q86WV1 359 aa6.74□□□□□ -1.33
SYNE1-220ENST00000471834 LAS1LQ9Y4W2 734 aaKnown RBP6.74□□□□□ -1.33
SYNE1-220ENST00000471834 SNRKQ9NRH2 765 aa6.73□□□□□ -1.33
SYNE1-220ENST00000471834 ARHGEF28Q8N1W1 1705 aaKnown RBP6.73□□□□□ -1.33
SYNE1-220ENST00000471834 SYCP1Q15431 976 aa6.73□□□□□ -1.33
SYNE1-220ENST00000471834 KCNB2Q92953 911 aa6.73□□□□□ -1.33
SYNE1-220ENST00000471834 SPTLC3Q9NUV7 552 aa6.73□□□□□ -1.33
SYNE1-220ENST00000471834 NCAPD2Q15021 1401 aa6.73□□□□□ -1.33
SYNE1-220ENST00000471834 YTHDC2Q9H6S0 1430 aaKnown RBP6.73□□□□□ -1.33
SYNE1-220ENST00000471834 ANP32BQ92688 251 aaKnown RBP6.73□□□□□ -1.33
SYNE1-220ENST00000471834 DDX19BQ9UMR2 479 aa6.73□□□□□ -1.33
SYNE1-220ENST00000471834 TMEM94Q12767 1356 aa6.73□□□□□ -1.33
SYNE1-220ENST00000471834 TRAK2O60296 914 aa6.73□□□□□ -1.33
SYNE1-220ENST00000471834 SF3B2Q13435 895 aaKnown RBP6.73□□□□□ -1.33
SYNE1-220ENST00000471834 PNNQ9H307 717 aaKnown RBP6.73□□□□□ -1.33
SYNE1-220ENST00000471834 ZDHHC9Q9Y397 364 aa6.73□□□□□ -1.33
SYNE1-220ENST00000471834 SLC20A2Q08357 652 aa6.72□□□□□ -1.33
SYNE1-220ENST00000471834 FAM53CQ9NYF3 392 aa6.72□□□□□ -1.33
SYNE1-220ENST00000471834 CFAP44Q96MT7 982 aa6.72□□□□□ -1.33
SYNE1-220ENST00000471834 ATF7IPQ6VMQ6 1270 aa6.72□□□□□ -1.33
SYNE1-220ENST00000471834 GCC1Q96CN9 775 aa6.72□□□□□ -1.33
SYNE1-220ENST00000471834 ADGRF5Q8IZF2 1346 aa6.72□□□□□ -1.33
SYNE1-220ENST00000471834 PANK2Q9BZ23 570 aa6.72□□□□□ -1.33
SYNE1-220ENST00000471834 ZBTB7BO15156 539 aaPredicted RBP6.72□□□□□ -1.33
SYNE1-220ENST00000471834 CCDC173Q0VFZ6 552 aa6.72□□□□□ -1.33
SYNE1-220ENST00000471834 CREBRFQ8IUR6 639 aa6.72□□□□□ -1.33
SYNE1-220ENST00000471834 RIMS2Q9UQ26 1411 aa6.72□□□□□ -1.33
SYNE1-220ENST00000471834 GOLGA6L3A6NEY3 463 aa6.71□□□□□ -1.33
SYNE1-220ENST00000471834 SMAP1Q8IYB5 467 aaPredicted RBP6.71□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 102.7 ms