RNA–Protein interactions for RNA: ENST00000455661.5

PTPRE-204, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 2

Gene PTPRE, Length 2,304 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-204ENST00000455661 PPP1R9BQ96SB3 815 aa17.1■□□□□ 0.33
PTPRE-204ENST00000455661 PDCL3Q9H2J4 239 aa17.1■□□□□ 0.33
PTPRE-204ENST00000455661 TRAK1Q9UPV9 953 aa17.1■□□□□ 0.33
PTPRE-204ENST00000455661 KIF16BQ96L93 1317 aa17.1■□□□□ 0.33
PTPRE-204ENST00000455661 ZFYVE16Q7Z3T8 1539 aa17.1■□□□□ 0.33
PTPRE-204ENST00000455661 K7ELQ4 463 aaPredicted RBP17.09■□□□□ 0.33
PTPRE-204ENST00000455661 NSD2O96028 1365 aa17.09■□□□□ 0.33
PTPRE-204ENST00000455661 ZSCAN30Q86W11 494 aa17.09■□□□□ 0.33
PTPRE-204ENST00000455661 VWDEQ8N2E2 1590 aa17.08■□□□□ 0.33
PTPRE-204ENST00000455661 SETBP1Q9Y6X0 1596 aa17.08■□□□□ 0.33
PTPRE-204ENST00000455661 KIF3BO15066 747 aa17.08■□□□□ 0.33
PTPRE-204ENST00000455661 ABCC11Q96J66 1382 aa17.08■□□□□ 0.32
PTPRE-204ENST00000455661 NRXN1Q9ULB1 1477 aa17.08■□□□□ 0.32
PTPRE-204ENST00000455661 MSNP26038 577 aaKnown RBP17.08■□□□□ 0.32
PTPRE-204ENST00000455661 KIAA1211Q6ZU35 1233 aa17.08■□□□□ 0.32
PTPRE-204ENST00000455661 IFT172Q9UG01 1749 aa17.08■□□□□ 0.32
PTPRE-204ENST00000455661 IL16Q14005 1332 aa17.08■□□□□ 0.32
PTPRE-204ENST00000455661 TMPOP42166 694 aaKnown RBP17.07■□□□□ 0.32
PTPRE-204ENST00000455661 FOXD4L1Q9NU39 408 aa17.07■□□□□ 0.32
PTPRE-204ENST00000455661 IBTKQ9P2D0 1353 aaPredicted RBP17.07■□□□□ 0.32
PTPRE-204ENST00000455661 UGGT1Q9NYU2 1555 aa17.06■□□□□ 0.32
PTPRE-204ENST00000455661 KLHL40Q2TBA0 621 aa17.06■□□□□ 0.32
PTPRE-204ENST00000455661 DDX49Q9Y6V7 483 aaKnown RBP17.06■□□□□ 0.32
PTPRE-204ENST00000455661 QRICH2Q9H0J4 1663 aa17.06■□□□□ 0.32
PTPRE-204ENST00000455661 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.05■□□□□ 0.32
PTPRE-204ENST00000455661 CLEC17AQ6ZS10 378 aa17.05■□□□□ 0.32
PTPRE-204ENST00000455661 KIF2CQ99661 725 aa17.05■□□□□ 0.32
PTPRE-204ENST00000455661 CHMP4BQ9H444 224 aaKnown RBP17.05■□□□□ 0.32
PTPRE-204ENST00000455661 U2SURPO15042 1029 aaKnown RBP17.05■□□□□ 0.32
PTPRE-204ENST00000455661 NOS1P29475 1434 aa17.05■□□□□ 0.32
PTPRE-204ENST00000455661 OFD1O75665 1012 aa17.04■□□□□ 0.32
PTPRE-204ENST00000455661 GCC1Q96CN9 775 aa17.04■□□□□ 0.32
PTPRE-204ENST00000455661 TRIM35Q9UPQ4 493 aa17.04■□□□□ 0.32
PTPRE-204ENST00000455661 ZC3H13Q5T200 1668 aaKnown RBP17.04■□□□□ 0.32
PTPRE-204ENST00000455661 SSFA2P28290 1259 aa17.04■□□□□ 0.32
PTPRE-204ENST00000455661 ALDH1L2Q3SY69 923 aa17.04■□□□□ 0.32
PTPRE-204ENST00000455661 ANKRD45Q5TZF3 282 aa17.04■□□□□ 0.32
PTPRE-204ENST00000455661 PUS7Q96PZ0 661 aaKnown RBP17.04■□□□□ 0.32
PTPRE-204ENST00000455661 PLEKHF1Q96S99 279 aa17.04■□□□□ 0.32
PTPRE-204ENST00000455661 ANKRD36BQ8N2N9 1353 aa17.03■□□□□ 0.32
PTPRE-204ENST00000455661 CFAP74Q9C0B2 1584 aa17.03■□□□□ 0.32
PTPRE-204ENST00000455661 CHGAP10645 457 aaKnown RBP17.03■□□□□ 0.32
PTPRE-204ENST00000455661 KCNA4P22459 653 aa17.03■□□□□ 0.32
PTPRE-204ENST00000455661 TERF1P54274 439 aa17.03■□□□□ 0.32
PTPRE-204ENST00000455661 CD2BP2O95400 341 aaKnown RBP17.02■□□□□ 0.32
PTPRE-204ENST00000455661 C14orf93Q9H972 538 aaKnown RBP17.02■□□□□ 0.32
PTPRE-204ENST00000455661 EVC2Q86UK5 1308 aa17.02■□□□□ 0.31
PTPRE-204ENST00000455661 BAG4O95429 457 aaKnown RBP17.02■□□□□ 0.31
PTPRE-204ENST00000455661 CD109Q6YHK3 1445 aa17.02■□□□□ 0.31
PTPRE-204ENST00000455661 TBC1D9Q6ZT07 1266 aa17.01■□□□□ 0.31
PTPRE-204ENST00000455661 MROH2AA6NES4 1674 aa17.01■□□□□ 0.31
PTPRE-204ENST00000455661 ATP7AQ04656 1500 aa17.01■□□□□ 0.31
PTPRE-204ENST00000455661 RIPK4P57078 832 aa17.01■□□□□ 0.31
PTPRE-204ENST00000455661 HS1BP3Q53T59 392 aa17.01■□□□□ 0.31
PTPRE-204ENST00000455661 GAS2L2Q8NHY3 880 aa17.01■□□□□ 0.31
PTPRE-204ENST00000455661 INO80Q9ULG1 1556 aaPredicted RBP17■□□□□ 0.31
PTPRE-204ENST00000455661 CALD1Q05682 793 aaKnown RBP17■□□□□ 0.31
PTPRE-204ENST00000455661 ZNF445P59923 1031 aa16.99■□□□□ 0.31
PTPRE-204ENST00000455661 CFAP44Q96MT7 982 aa16.99■□□□□ 0.31
PTPRE-204ENST00000455661 ARAP3Q8WWN8 1544 aa16.99■□□□□ 0.31
PTPRE-204ENST00000455661 ZCCHC11Q5TAX3 1644 aaKnown RBP16.99■□□□□ 0.31
PTPRE-204ENST00000455661 NUCB2P80303 420 aa16.99■□□□□ 0.31
PTPRE-204ENST00000455661 RBM42Q9BTD8 480 aaKnown RBP16.99■□□□□ 0.31
PTPRE-204ENST00000455661 ZNF428Q96B54 188 aa16.98■□□□□ 0.31
PTPRE-204ENST00000455661 EFCAB6Q5THR3 1501 aa16.98■□□□□ 0.31
PTPRE-204ENST00000455661 CDC45O75419 566 aa16.98■□□□□ 0.31
PTPRE-204ENST00000455661 TMEM132EQ6IEE7 984 aa16.98■□□□□ 0.31
PTPRE-204ENST00000455661 FANCAO15360 1455 aa16.98■□□□□ 0.31
PTPRE-204ENST00000455661 NCLP19338 710 aaKnown RBP16.97■□□□□ 0.31
PTPRE-204ENST00000455661 MAP7D2Q96T17 732 aa16.97■□□□□ 0.31
PTPRE-204ENST00000455661 RABEP1Q15276 862 aa16.97■□□□□ 0.31
PTPRE-204ENST00000455661 ADGRB3O60242 1522 aa16.96■□□□□ 0.31
PTPRE-204ENST00000455661 ARHGAP31Q2M1Z3 1444 aa16.96■□□□□ 0.31
PTPRE-204ENST00000455661 ZBTB7BO15156 539 aaPredicted RBP16.96■□□□□ 0.31
PTPRE-204ENST00000455661 BRPF1P55201 1214 aaPredicted RBP16.96■□□□□ 0.31
PTPRE-204ENST00000455661 MCTP1Q6DN14 999 aa16.96■□□□□ 0.31
PTPRE-204ENST00000455661 PPIP5K1Q6PFW1 1433 aa16.96■□□□□ 0.31
PTPRE-204ENST00000455661 ADGRB1O14514 1584 aa16.95■□□□□ 0.3
PTPRE-204ENST00000455661 MROH1Q8NDA8 1641 aa16.95■□□□□ 0.3
PTPRE-204ENST00000455661 MED14O60244 1454 aa16.95■□□□□ 0.3
PTPRE-204ENST00000455661 CAVIN1Q6NZI2 390 aaKnown RBP16.95■□□□□ 0.3
PTPRE-204ENST00000455661 REREQ9P2R6 1566 aa16.94■□□□□ 0.3
PTPRE-204ENST00000455661 ZSCAN23Q3MJ62 389 aa16.94■□□□□ 0.3
PTPRE-204ENST00000455661 NOL7Q9UMY1 257 aaKnown RBP16.94■□□□□ 0.3
PTPRE-204ENST00000455661 ARHGAP45Q92619 1136 aa16.93■□□□□ 0.3
PTPRE-204ENST00000455661 R3HCC1Q9Y3T6 440 aaKnown RBP16.93■□□□□ 0.3
PTPRE-204ENST00000455661 RPGRIP1LQ68CZ1 1315 aa16.93■□□□□ 0.3
PTPRE-204ENST00000455661 CHD1O14646 1710 aa16.93■□□□□ 0.3
PTPRE-204ENST00000455661 ZNF500O60304 480 aaPredicted RBP16.92■□□□□ 0.3
PTPRE-204ENST00000455661 DIAPH1O60610 1272 aaKnown RBP16.92■□□□□ 0.3
PTPRE-204ENST00000455661 CWC22Q9HCG8 908 aaKnown RBP16.92■□□□□ 0.3
PTPRE-204ENST00000455661 CABP2Q9NPB3 220 aa16.92■□□□□ 0.3
PTPRE-204ENST00000455661 ERCC6L2Q5T890 1561 aa16.92■□□□□ 0.3
PTPRE-204ENST00000455661 PPLO60437 1756 aa16.92■□□□□ 0.3
PTPRE-204ENST00000455661 COL3A1P02461 1466 aaPredicted RBP16.92■□□□□ 0.3
PTPRE-204ENST00000455661 GGNBP2Q9H3C7 697 aa16.92■□□□□ 0.3
PTPRE-204ENST00000455661 C1orf115Q9H7X2 142 aa16.92■□□□□ 0.3
PTPRE-204ENST00000455661 LMBRD1Q9NUN5 540 aa16.92■□□□□ 0.3
PTPRE-204ENST00000455661 PPRC1Q5VV67 1664 aaKnown RBP16.91■□□□□ 0.3
PTPRE-204ENST00000455661 UHRF1BP1LA0JNW5 1464 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms