RNA–Protein interactions for RNA: ENST00000455661.5

PTPRE-204, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 2

Gene PTPRE, Length 2,304 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-204ENST00000455661 NISCHQ9Y2I1 1504 aa26.66■■□□□ 1.86
PTPRE-204ENST00000455661 SHROOM4Q9ULL8 1493 aa23.2■■□□□ 1.3
PTPRE-204ENST00000455661 SUPT5HO00267 1087 aaKnown RBP23.06■■□□□ 1.28
PTPRE-204ENST00000455661 HRCP23327 699 aa22.98■■□□□ 1.27
PTPRE-204ENST00000455661 CHIC1Q5VXU3 224 aa22.66■■□□□ 1.22
PTPRE-204ENST00000455661 MYO15BQ96JP2 1530 aa22.66■■□□□ 1.22
PTPRE-204ENST00000455661 ZCCHC6Q5VYS8 1495 aaKnown RBP22.65■■□□□ 1.22
PTPRE-204ENST00000455661 PCGF6Q9BYE7 350 aa22.58■■□□□ 1.21
PTPRE-204ENST00000455661 CCDC180Q9P1Z9 1646 aa22.39■■□□□ 1.17
PTPRE-204ENST00000455661 PPARGC1BQ86YN6 1023 aaKnown RBP22.36■■□□□ 1.17
PTPRE-204ENST00000455661 DCAF1Q9Y4B6 1507 aa22.31■■□□□ 1.16
PTPRE-204ENST00000455661 DCAF8L2P0C7V8 631 aa22.07■■□□□ 1.12
PTPRE-204ENST00000455661 TRIM26Q12899 539 aaPredicted RBP22.05■■□□□ 1.12
PTPRE-204ENST00000455661 LOC105371045A0A1W2PR82 267 aa22.02■■□□□ 1.12
PTPRE-204ENST00000455661 PELP1Q8IZL8 1130 aaKnown RBP21.94■■□□□ 1.1
PTPRE-204ENST00000455661 ZEB1P37275 1124 aaPredicted RBP21.89■■□□□ 1.09
PTPRE-204ENST00000455661 SCAF1Q9H7N4 1312 aaKnown RBP21.51■■□□□ 1.03
PTPRE-204ENST00000455661 ABCC9O60706 1549 aa21.48■■□□□ 1.03
PTPRE-204ENST00000455661 TRIM41Q8WV44 630 aa21.45■■□□□ 1.02
PTPRE-204ENST00000455661 RSF1Q96T23 1441 aaPredicted RBP21.32■■□□□ 1
PTPRE-204ENST00000455661 FAM9AQ8IZU1 332 aaPredicted RBP21.28■■□□□ 1
PTPRE-204ENST00000455661 RB1CC1Q8TDY2 1594 aa21.2■□□□□ 0.98
PTPRE-204ENST00000455661 ACIN1Q9UKV3 1341 aaKnown RBP21.17■□□□□ 0.98
PTPRE-204ENST00000455661 SCRIBQ14160 1630 aa21.1■□□□□ 0.97
PTPRE-204ENST00000455661 EHMT2Q96KQ7 1210 aa21.09■□□□□ 0.97
PTPRE-204ENST00000455661 MYT1Q01538 1121 aa21.07■□□□□ 0.96
PTPRE-204ENST00000455661 CCER1Q8TC90 406 aaPredicted RBP21.05■□□□□ 0.96
PTPRE-204ENST00000455661 NEUROD1Q13562 356 aa21.04■□□□□ 0.96
PTPRE-204ENST00000455661 CENPBP07199 599 aaPredicted RBP21.03■□□□□ 0.96
PTPRE-204ENST00000455661 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.01■□□□□ 0.95
PTPRE-204ENST00000455661 DIEXFQ68CQ4 756 aaKnown RBP20.95■□□□□ 0.94
PTPRE-204ENST00000455661 GTF3C3Q9Y5Q9 886 aa20.93■□□□□ 0.94
PTPRE-204ENST00000455661 CECR2Q9BXF3 1484 aa20.75■□□□□ 0.91
PTPRE-204ENST00000455661 MROH2BQ7Z745 1585 aa20.75■□□□□ 0.91
PTPRE-204ENST00000455661 WRNQ14191 1432 aaPredicted RBP eCLIP20.7■□□□□ 0.9
PTPRE-204ENST00000455661 WIZO95785 1651 aa20.68■□□□□ 0.9
PTPRE-204ENST00000455661 ZNF316A6NFI3 1004 aaPredicted RBP20.65■□□□□ 0.9
PTPRE-204ENST00000455661 BAZ1AQ9NRL2 1556 aaPredicted RBP20.6■□□□□ 0.89
PTPRE-204ENST00000455661 NACADO15069 1562 aa20.59■□□□□ 0.89
PTPRE-204ENST00000455661 EIF4G1Q04637 1599 aaKnown RBP20.59■□□□□ 0.89
PTPRE-204ENST00000455661 TTBK1Q5TCY1 1321 aaPredicted RBP20.57■□□□□ 0.88
PTPRE-204ENST00000455661 CEP162Q5TB80 1403 aa20.57■□□□□ 0.88
PTPRE-204ENST00000455661 TNIKQ9UKE5 1360 aa20.51■□□□□ 0.87
PTPRE-204ENST00000455661 YTHDC1Q96MU7 727 aaKnown RBP20.49■□□□□ 0.87
PTPRE-204ENST00000455661 CCDC88BA6NC98 1476 aa20.45■□□□□ 0.86
PTPRE-204ENST00000455661 ABCC8Q09428 1581 aa20.42■□□□□ 0.86
PTPRE-204ENST00000455661 EEA1Q15075 1411 aa20.41■□□□□ 0.86
PTPRE-204ENST00000455661 MIER1Q8N108 512 aa20.38■□□□□ 0.85
PTPRE-204ENST00000455661 UBTFP17480 764 aaKnown RBP20.37■□□□□ 0.85
PTPRE-204ENST00000455661 CSRNP3Q8WYN3 585 aa20.36■□□□□ 0.85
PTPRE-204ENST00000455661 TOP2AP11388 1531 aaKnown RBP20.36■□□□□ 0.85
PTPRE-204ENST00000455661 SOGA1O94964 1423 aa20.36■□□□□ 0.85
PTPRE-204ENST00000455661 AEBP2Q6ZN18 517 aaPredicted RBP20.3■□□□□ 0.84
PTPRE-204ENST00000455661 GOLGA3Q08378 1498 aa20.29■□□□□ 0.84
PTPRE-204ENST00000455661 SMARCA2P51531 1590 aa20.26■□□□□ 0.83
PTPRE-204ENST00000455661 HNRNPUL2Q1KMD3 747 aaKnown RBP20.24■□□□□ 0.83
PTPRE-204ENST00000455661 RUSC2Q8N2Y8 1516 aa20.21■□□□□ 0.83
PTPRE-204ENST00000455661 CLSPNQ9HAW4 1339 aa20.19■□□□□ 0.82
PTPRE-204ENST00000455661 SMARCA4P51532 1647 aa20.18■□□□□ 0.82
PTPRE-204ENST00000455661 APLP2Q06481 763 aa20.11■□□□□ 0.81
PTPRE-204ENST00000455661 CEP164Q9UPV0 1460 aa20.11■□□□□ 0.81
PTPRE-204ENST00000455661 CLIP1P30622 1438 aa20.08■□□□□ 0.8
PTPRE-204ENST00000455661 KIF21BO75037 1637 aa20.06■□□□□ 0.8
PTPRE-204ENST00000455661 VPS8Q8N3P4 1428 aa20.06■□□□□ 0.8
PTPRE-204ENST00000455661 SUPT16HQ9Y5B9 1047 aaKnown RBP20.01■□□□□ 0.79
PTPRE-204ENST00000455661 BAZ1BQ9UIG0 1483 aaKnown RBP19.97■□□□□ 0.79
PTPRE-204ENST00000455661 DHX57Q6P158 1386 aaKnown RBP19.89■□□□□ 0.78
PTPRE-204ENST00000455661 SYNJ1O43426 1573 aa19.88■□□□□ 0.77
PTPRE-204ENST00000455661 TSHZ2Q9NRE2 1034 aa19.84■□□□□ 0.77
PTPRE-204ENST00000455661 RAPGEF2Q9Y4G8 1499 aa19.83■□□□□ 0.77
PTPRE-204ENST00000455661 UNC13AQ9UPW8 1703 aa19.81■□□□□ 0.76
PTPRE-204ENST00000455661 ANP32EQ9BTT0 268 aa19.81■□□□□ 0.76
PTPRE-204ENST00000455661 RANGAP1P46060 587 aaPredicted RBP19.8■□□□□ 0.76
PTPRE-204ENST00000455661 PEG3Q9GZU2 1588 aa19.74■□□□□ 0.75
PTPRE-204ENST00000455661 RRBP1Q9P2E9 1410 aaKnown RBP19.67■□□□□ 0.74
PTPRE-204ENST00000455661 CUX2O14529 1486 aa19.64■□□□□ 0.74
PTPRE-204ENST00000455661 ERICH3Q5RHP9 1530 aa19.64■□□□□ 0.73
PTPRE-204ENST00000455661 ARAP1Q96P48 1450 aa19.64■□□□□ 0.73
PTPRE-204ENST00000455661 KANK4Q5T7N3 995 aaPredicted RBP19.64■□□□□ 0.73
PTPRE-204ENST00000455661 TOP2BQ02880 1626 aa19.61■□□□□ 0.73
PTPRE-204ENST00000455661 CCNB3Q8WWL7 1395 aa19.58■□□□□ 0.72
PTPRE-204ENST00000455661 PRXQ9BXM0 1461 aa19.57■□□□□ 0.72
PTPRE-204ENST00000455661 PABPN1Q86U42 306 aaKnown RBP eCLIP19.56■□□□□ 0.72
PTPRE-204ENST00000455661 FKBP8Q14318 412 aa19.55■□□□□ 0.72
PTPRE-204ENST00000455661 KCNH8Q96L42 1107 aa19.55■□□□□ 0.72
PTPRE-204ENST00000455661 BCANQ96GW7 911 aa19.54■□□□□ 0.72
PTPRE-204ENST00000455661 ATAD2BQ9ULI0 1458 aa19.53■□□□□ 0.72
PTPRE-204ENST00000455661 BICRAQ9NZM4 1560 aa19.52■□□□□ 0.72
PTPRE-204ENST00000455661 BIVM-ERCC5R4GMW8 1640 aa19.51■□□□□ 0.71
PTPRE-204ENST00000455661 NEFLP07196 543 aa19.51■□□□□ 0.71
PTPRE-204ENST00000455661 BCL11AQ9H165 835 aa19.5■□□□□ 0.71
PTPRE-204ENST00000455661 ITGAEP38570 1179 aa19.49■□□□□ 0.71
PTPRE-204ENST00000455661 RAB3GAP2Q9H2M9 1393 aa19.47■□□□□ 0.71
PTPRE-204ENST00000455661 DDX10Q13206 875 aaKnown RBP19.45■□□□□ 0.7
PTPRE-204ENST00000455661 MAPKBP1O60336 1514 aa19.44■□□□□ 0.7
PTPRE-204ENST00000455661 RBM19Q9Y4C8 960 aaKnown RBP19.42■□□□□ 0.7
PTPRE-204ENST00000455661 KIF27Q86VH2 1401 aa19.4■□□□□ 0.7
PTPRE-204ENST00000455661 SETD5Q9C0A6 1442 aa19.39■□□□□ 0.69
PTPRE-204ENST00000455661 CCER2I3L3R5 266 aa19.38■□□□□ 0.69
PTPRE-204ENST00000455661 ARHGAP35Q9NRY4 1499 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms