RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 GTPBP4Q9BZE4 634 aaKnown RBP24.05■■□□□ 1.44
HMGA1-205ENST00000447654 KNSTRNQ9Y448 316 aa24.05■■□□□ 1.44
HMGA1-205ENST00000447654 DIP2BQ9P265 1576 aa24.05■■□□□ 1.44
HMGA1-205ENST00000447654 MCM5P33992 734 aa24.05■■□□□ 1.44
HMGA1-205ENST00000447654 CDCA8Q53HL2 280 aa24.05■■□□□ 1.44
HMGA1-205ENST00000447654 CCDC94Q9BW85 323 aaPredicted RBP24.05■■□□□ 1.44
HMGA1-205ENST00000447654 PIK3C2BO00750 1634 aa24.04■■□□□ 1.44
HMGA1-205ENST00000447654 PMFBP1Q8TBY8 1022 aa24.04■■□□□ 1.44
HMGA1-205ENST00000447654 C14orf93Q9H972 538 aaKnown RBP24.04■■□□□ 1.44
HMGA1-205ENST00000447654 CLUAP1Q96AJ1 413 aa24.03■■□□□ 1.44
HMGA1-205ENST00000447654 TSPOAP1O95153 1857 aa24.03■■□□□ 1.44
HMGA1-205ENST00000447654 UQCRHLA0A096LP55 91 aa24.03■■□□□ 1.44
HMGA1-205ENST00000447654 UQCRHP07919 91 aa24.03■■□□□ 1.44
HMGA1-205ENST00000447654 NASPP49321 788 aaPredicted RBP24.03■■□□□ 1.44
HMGA1-205ENST00000447654 NOL7Q9UMY1 257 aaKnown RBP24.03■■□□□ 1.44
HMGA1-205ENST00000447654 TRAK1Q9UPV9 953 aa24.03■■□□□ 1.44
HMGA1-205ENST00000447654 ADGRB1O14514 1584 aa24.03■■□□□ 1.44
HMGA1-205ENST00000447654 KDM5AP29375 1690 aaKnown RBP24.02■■□□□ 1.44
HMGA1-205ENST00000447654 IDI1Q13907 227 aa24.02■■□□□ 1.44
HMGA1-205ENST00000447654 R3HCC1Q9Y3T6 440 aaKnown RBP24.02■■□□□ 1.44
HMGA1-205ENST00000447654 PDIA4P13667 645 aaKnown RBP24.01■■□□□ 1.43
HMGA1-205ENST00000447654 PPP2R1AP30153 589 aa24.01■■□□□ 1.43
HMGA1-205ENST00000447654 SETBP1Q9Y6X0 1596 aa24■■□□□ 1.43
HMGA1-205ENST00000447654 HSCBQ8IWL3 235 aa24■■□□□ 1.43
HMGA1-205ENST00000447654 ARHGAP31Q2M1Z3 1444 aa24■■□□□ 1.43
HMGA1-205ENST00000447654 MYO3AQ8NEV4 1616 aa24■■□□□ 1.43
HMGA1-205ENST00000447654 CARD14Q9BXL6 1004 aa23.99■■□□□ 1.43
HMGA1-205ENST00000447654 ZSCAN20P17040 1043 aaPredicted RBP23.98■■□□□ 1.43
HMGA1-205ENST00000447654 NGEFQ8N5V2 710 aa23.98■■□□□ 1.43
HMGA1-205ENST00000447654 BBXQ8WY36 941 aaPredicted RBP23.98■■□□□ 1.43
HMGA1-205ENST00000447654 SENP3Q9H4L4 574 aaPredicted RBP23.98■■□□□ 1.43
HMGA1-205ENST00000447654 ASXL1Q8IXJ9 1541 aa23.98■■□□□ 1.43
HMGA1-205ENST00000447654 CANXP27824 592 aaKnown RBP23.98■■□□□ 1.43
HMGA1-205ENST00000447654 NEXMIFQ5QGS0 1516 aa23.97■■□□□ 1.43
HMGA1-205ENST00000447654 ADAMTS8Q9UP79 889 aa23.97■■□□□ 1.43
HMGA1-205ENST00000447654 RPGRIP1LQ68CZ1 1315 aa23.97■■□□□ 1.43
HMGA1-205ENST00000447654 LETM1O95202 739 aaPredicted RBP23.96■■□□□ 1.43
HMGA1-205ENST00000447654 TAF3Q5VWG9 929 aa23.96■■□□□ 1.43
HMGA1-205ENST00000447654 SASS6Q6UVJ0 657 aa23.96■■□□□ 1.43
HMGA1-205ENST00000447654 SNX21Q969T3 373 aa23.96■■□□□ 1.43
HMGA1-205ENST00000447654 C22orf23Q9BZE7 217 aa23.96■■□□□ 1.43
HMGA1-205ENST00000447654 SMC5Q8IY18 1101 aa23.96■■□□□ 1.43
HMGA1-205ENST00000447654 FBXO31Q5XUX0 539 aaPredicted RBP23.95■■□□□ 1.42
HMGA1-205ENST00000447654 ZHX1Q9UKY1 873 aaPredicted RBP23.95■■□□□ 1.42
HMGA1-205ENST00000447654 ZC3H13Q5T200 1668 aaKnown RBP23.95■■□□□ 1.42
HMGA1-205ENST00000447654 GTF2E1P29083 439 aaPredicted RBP23.95■■□□□ 1.42
HMGA1-205ENST00000447654 SBNO2Q9Y2G9 1366 aa23.94■■□□□ 1.42
HMGA1-205ENST00000447654 RAB3GAP1Q15042 981 aa23.93■■□□□ 1.42
HMGA1-205ENST00000447654 TNPO1Q92973 898 aaKnown RBP23.93■■□□□ 1.42
HMGA1-205ENST00000447654 MYO5BQ9ULV0 1848 aa23.93■■□□□ 1.42
HMGA1-205ENST00000447654 WDR43Q15061 677 aaKnown RBP eCLIP23.92■■□□□ 1.42
HMGA1-205ENST00000447654 CLEC17AQ6ZS10 378 aa23.92■■□□□ 1.42
HMGA1-205ENST00000447654 PDLIM2Q96JY6 352 aa23.92■■□□□ 1.42
HMGA1-205ENST00000447654 E9PSI1 815 aa23.91■■□□□ 1.42
HMGA1-205ENST00000447654 PPP4R3BQ5MIZ7 849 aa23.91■■□□□ 1.42
HMGA1-205ENST00000447654 SPRYD3Q8NCJ5 442 aa23.91■■□□□ 1.42
HMGA1-205ENST00000447654 PREX1Q8TCU6 1659 aa23.9■■□□□ 1.42
HMGA1-205ENST00000447654 QRICH2Q9H0J4 1663 aa23.9■■□□□ 1.42
HMGA1-205ENST00000447654 NPC1L1Q9UHC9 1359 aa23.9■■□□□ 1.42
HMGA1-205ENST00000447654 GOLGA6L22H0YM25 854 aa23.89■■□□□ 1.41
HMGA1-205ENST00000447654 ZNF445P59923 1031 aa23.89■■□□□ 1.41
HMGA1-205ENST00000447654 VGFO15240 615 aaPredicted RBP23.88■■□□□ 1.41
HMGA1-205ENST00000447654 KLHL40Q2TBA0 621 aa23.88■■□□□ 1.41
HMGA1-205ENST00000447654 SLC12A5Q9H2X9 1139 aa23.88■■□□□ 1.41
HMGA1-205ENST00000447654 ZKSCAN5Q9Y2L8 839 aa23.88■■□□□ 1.41
HMGA1-205ENST00000447654 BCL11BQ9C0K0 894 aaPredicted RBP23.87■■□□□ 1.41
HMGA1-205ENST00000447654 SLC52A1Q9NWF4 448 aa23.87■■□□□ 1.41
HMGA1-205ENST00000447654 TMEM131LA2VDJ0 1609 aa23.86■■□□□ 1.41
HMGA1-205ENST00000447654 IPO4Q8TEX9 1081 aaKnown RBP23.86■■□□□ 1.41
HMGA1-205ENST00000447654 NAP1L2Q9ULW6 460 aaPredicted RBP23.86■■□□□ 1.41
HMGA1-205ENST00000447654 RBM25P49756 843 aaKnown RBP23.85■■□□□ 1.41
HMGA1-205ENST00000447654 PDZRN3Q9UPQ7 1066 aa23.85■■□□□ 1.41
HMGA1-205ENST00000447654 BCAR3O75815 825 aa23.84■■□□□ 1.41
HMGA1-205ENST00000447654 TAF7LQ5H9L4 462 aa23.84■■□□□ 1.41
HMGA1-205ENST00000447654 RWDD1Q9H446 243 aaPredicted RBP23.84■■□□□ 1.41
HMGA1-205ENST00000447654 ARHGEF28Q8N1W1 1705 aaKnown RBP23.83■■□□□ 1.41
HMGA1-205ENST00000447654 EIF2AK3Q9NZJ5 1116 aaKnown RBP23.83■■□□□ 1.41
HMGA1-205ENST00000447654 PRDM10Q9NQV6 1147 aa23.82■■□□□ 1.4
HMGA1-205ENST00000447654 SAFB2Q14151 953 aaKnown RBP eCLIP23.81■■□□□ 1.4
HMGA1-205ENST00000447654 HSP90AB1P08238 724 aaKnown RBP23.81■■□□□ 1.4
HMGA1-205ENST00000447654 TULP4Q9NRJ4 1543 aa23.8■■□□□ 1.4
HMGA1-205ENST00000447654 ZFYVE9O95405 1425 aa23.8■■□□□ 1.4
HMGA1-205ENST00000447654 STK26Q9P289 416 aa23.79■■□□□ 1.4
HMGA1-205ENST00000447654 CCDC39Q9UFE4 941 aa23.79■■□□□ 1.4
HMGA1-205ENST00000447654 NSD3Q9BZ95 1437 aa23.79■■□□□ 1.4
HMGA1-205ENST00000447654 MLECQ14165 292 aa23.79■■□□□ 1.4
HMGA1-205ENST00000447654 MYRIPQ8NFW9 859 aa23.79■■□□□ 1.4
HMGA1-205ENST00000447654 XPCQ01831 940 aaPredicted RBP23.78■■□□□ 1.4
HMGA1-205ENST00000447654 PRIMPOLQ96LW4 560 aa23.78■■□□□ 1.4
HMGA1-205ENST00000447654 REREQ9P2R6 1566 aa23.77■■□□□ 1.39
HMGA1-205ENST00000447654 GTF2F1P35269 517 aaKnown RBP eCLIP23.76■■□□□ 1.39
HMGA1-205ENST00000447654 HMGN5P82970 282 aaKnown RBP23.76■■□□□ 1.39
HMGA1-205ENST00000447654 COG6Q9Y2V7 657 aa23.76■■□□□ 1.39
HMGA1-205ENST00000447654 CLTCQ00610 1675 aaKnown RBP23.76■■□□□ 1.39
HMGA1-205ENST00000447654 AGLP35573 1532 aa23.76■■□□□ 1.39
HMGA1-205ENST00000447654 CCDC146Q8IYE0 955 aa23.75■■□□□ 1.39
HMGA1-205ENST00000447654 CABP2Q9NPB3 220 aa23.75■■□□□ 1.39
HMGA1-205ENST00000447654 MFAP1P55081 439 aaKnown RBP23.75■■□□□ 1.39
HMGA1-205ENST00000447654 TMEM51Q9NW97 253 aa23.75■■□□□ 1.39
HMGA1-205ENST00000447654 DDX49Q9Y6V7 483 aaKnown RBP23.73■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms