RNA–Protein interactions for RNA: ENST00000434472.6

CD44-210, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-210ENST00000434472 PNPLA6Q8IY17 1366 aa13.39□□□□□ -0.27
CD44-210ENST00000434472 KIF20BQ96Q89 1820 aa13.39□□□□□ -0.27
CD44-210ENST00000434472 U2SURPO15042 1029 aaKnown RBP13.39□□□□□ -0.27
CD44-210ENST00000434472 DIAPH1O60610 1272 aaKnown RBP13.39□□□□□ -0.27
CD44-210ENST00000434472 TMPOP42166 694 aaKnown RBP13.39□□□□□ -0.27
CD44-210ENST00000434472 C8orf34Q49A92 452 aa13.39□□□□□ -0.27
CD44-210ENST00000434472 PANK1Q8TE04 598 aa13.39□□□□□ -0.27
CD44-210ENST00000434472 HDGFP51858 240 aaKnown RBP13.38□□□□□ -0.27
CD44-210ENST00000434472 SKAP1Q86WV1 359 aa13.38□□□□□ -0.27
CD44-210ENST00000434472 USP35Q9P2H5 1018 aa13.38□□□□□ -0.27
CD44-210ENST00000434472 CDC42BPGQ6DT37 1551 aa13.37□□□□□ -0.27
CD44-210ENST00000434472 IGHDP01880 384 aa13.37□□□□□ -0.27
CD44-210ENST00000434472 RGS3P49796 1198 aa13.37□□□□□ -0.27
CD44-210ENST00000434472 NBR1Q14596 966 aa13.37□□□□□ -0.27
CD44-210ENST00000434472 ZKSCAN2Q63HK3 967 aa13.37□□□□□ -0.27
CD44-210ENST00000434472 SIRT1Q96EB6 747 aa13.37□□□□□ -0.27
CD44-210ENST00000434472 CABP1Q9NZU7 370 aa13.37□□□□□ -0.27
CD44-210ENST00000434472 RWDD1Q9H446 243 aaPredicted RBP13.36□□□□□ -0.27
CD44-210ENST00000434472 DAXXQ9UER7 740 aaPredicted RBP13.36□□□□□ -0.27
CD44-210ENST00000434472 TSPOAP1O95153 1857 aa13.35□□□□□ -0.27
CD44-210ENST00000434472 FCHSD2O94868 740 aa13.35□□□□□ -0.27
CD44-210ENST00000434472 NEFMP07197 916 aa13.35□□□□□ -0.27
CD44-210ENST00000434472 SETD1AO15047 1707 aaKnown RBP13.35□□□□□ -0.27
CD44-210ENST00000434472 ESF1Q9H501 851 aaKnown RBP13.35□□□□□ -0.27
CD44-210ENST00000434472 MVPQ14764 893 aaKnown RBP13.34□□□□□ -0.27
CD44-210ENST00000434472 TRIM35Q9UPQ4 493 aa13.34□□□□□ -0.27
CD44-210ENST00000434472 FAM135BQ49AJ0 1406 aa13.33□□□□□ -0.28
CD44-210ENST00000434472 EDC4Q6P2E9 1401 aaKnown RBP13.33□□□□□ -0.28
CD44-210ENST00000434472 DEKP35659 375 aaKnown RBP13.33□□□□□ -0.28
CD44-210ENST00000434472 DZIP1LQ8IYY4 767 aaKnown RBP13.33□□□□□ -0.28
CD44-210ENST00000434472 RIPK4P57078 832 aa13.32□□□□□ -0.28
CD44-210ENST00000434472 EXOSC9Q06265 439 aaKnown RBP13.32□□□□□ -0.28
CD44-210ENST00000434472 FTSJ3Q8IY81 847 aaKnown RBP13.32□□□□□ -0.28
CD44-210ENST00000434472 SENP3Q9H4L4 574 aaPredicted RBP13.32□□□□□ -0.28
CD44-210ENST00000434472 KNDC1Q76NI1 1749 aa13.32□□□□□ -0.28
CD44-210ENST00000434472 WASLO00401 505 aaPredicted RBP13.31□□□□□ -0.28
CD44-210ENST00000434472 RLBP1P12271 317 aa13.31□□□□□ -0.28
CD44-210ENST00000434472 CALD1Q05682 793 aaKnown RBP13.31□□□□□ -0.28
CD44-210ENST00000434472 ZNF428Q96B54 188 aa13.31□□□□□ -0.28
CD44-210ENST00000434472 SMC4Q9NTJ3 1288 aa13.31□□□□□ -0.28
CD44-210ENST00000434472 CPSF1Q10570 1443 aaKnown RBP13.31□□□□□ -0.28
CD44-210ENST00000434472 VIRMAQ69YN4 1812 aaKnown RBP13.31□□□□□ -0.28
CD44-210ENST00000434472 IPO8O15397 1037 aaKnown RBP13.31□□□□□ -0.28
CD44-210ENST00000434472 WAPLQ7Z5K2 1190 aa13.31□□□□□ -0.28
CD44-210ENST00000434472 TECPR2O15040 1411 aa13.3□□□□□ -0.28
CD44-210ENST00000434472 AATKQ6ZMQ8 1374 aa13.3□□□□□ -0.28
CD44-210ENST00000434472 ALDH1L2Q3SY69 923 aa13.3□□□□□ -0.28
CD44-210ENST00000434472 BCL2L13Q9BXK5 485 aa13.3□□□□□ -0.28
CD44-210ENST00000434472 DDX19BQ9UMR2 479 aa13.3□□□□□ -0.28
CD44-210ENST00000434472 NRXN3Q9Y4C0 1643 aa13.3□□□□□ -0.28
CD44-210ENST00000434472 KIF16BQ96L93 1317 aa13.3□□□□□ -0.28
CD44-210ENST00000434472 MLECQ14165 292 aa13.29□□□□□ -0.28
CD44-210ENST00000434472 TSR2Q969E8 191 aaKnown RBP13.29□□□□□ -0.28
CD44-210ENST00000434472 POLKQ9UBT6 870 aa13.29□□□□□ -0.28
CD44-210ENST00000434472 PCDHB15Q9Y5E8 787 aa13.29□□□□□ -0.28
CD44-210ENST00000434472 PPIP5K1Q6PFW1 1433 aa13.29□□□□□ -0.28
CD44-210ENST00000434472 TNRQ92752 1358 aa13.29□□□□□ -0.28
CD44-210ENST00000434472 ATF7IPQ6VMQ6 1270 aa13.28□□□□□ -0.28
CD44-210ENST00000434472 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.28□□□□□ -0.28
CD44-210ENST00000434472 RSPH6AQ9H0K4 717 aa13.28□□□□□ -0.28
CD44-210ENST00000434472 CDK12Q9NYV4 1490 aaPredicted RBP13.28□□□□□ -0.28
CD44-210ENST00000434472 CPS1P31327 1500 aa13.28□□□□□ -0.28
CD44-210ENST00000434472 LRRC7Q96NW7 1537 aa13.28□□□□□ -0.28
CD44-210ENST00000434472 NFE2L2Q16236 605 aa13.28□□□□□ -0.28
CD44-210ENST00000434472 ZNF692Q9BU19 519 aaPredicted RBP13.28□□□□□ -0.28
CD44-210ENST00000434472 PDZRN3Q9UPQ7 1066 aa13.28□□□□□ -0.28
CD44-210ENST00000434472 TNNQ9UQP3 1299 aa13.28□□□□□ -0.28
CD44-210ENST00000434472 LAS1LQ9Y4W2 734 aaKnown RBP13.28□□□□□ -0.28
CD44-210ENST00000434472 HDAC1Q13547 482 aaPredicted RBP13.27□□□□□ -0.29
CD44-210ENST00000434472 SSH1Q8WYL5 1049 aa13.27□□□□□ -0.29
CD44-210ENST00000434472 NUDT16Q96DE0 195 aaKnown RBP13.27□□□□□ -0.29
CD44-210ENST00000434472 CHMP4BQ9H444 224 aaKnown RBP13.27□□□□□ -0.29
CD44-210ENST00000434472 METP08581 1390 aa13.26□□□□□ -0.29
CD44-210ENST00000434472 PRKAR2BP31323 418 aa13.26□□□□□ -0.29
CD44-210ENST00000434472 BRPF1P55201 1214 aaPredicted RBP13.26□□□□□ -0.29
CD44-210ENST00000434472 LMOD3Q0VAK6 560 aa13.26□□□□□ -0.29
CD44-210ENST00000434472 COG3Q96JB2 828 aa13.26□□□□□ -0.29
CD44-210ENST00000434472 UPF2Q9HAU5 1272 aaKnown RBP13.26□□□□□ -0.29
CD44-210ENST00000434472 CCDC61Q9Y6R9 512 aa13.26□□□□□ -0.29
CD44-210ENST00000434472 TRIM27P14373 513 aa13.24□□□□□ -0.29
CD44-210ENST00000434472 IL13P35225 146 aa13.24□□□□□ -0.29
CD44-210ENST00000434472 GNAI1P63096 354 aa13.24□□□□□ -0.29
CD44-210ENST00000434472 BECN1Q14457 450 aa13.24□□□□□ -0.29
CD44-210ENST00000434472 NOB1Q9ULX3 412 aaKnown RBP13.24□□□□□ -0.29
CD44-210ENST00000434472 TMEM2Q9UHN6 1383 aa13.24□□□□□ -0.29
CD44-210ENST00000434472 MON2Q7Z3U7 1717 aa13.24□□□□□ -0.29
CD44-210ENST00000434472 TXNDC2Q86VQ3 553 aa13.24□□□□□ -0.29
CD44-210ENST00000434472 KIF13AQ9H1H9 1805 aa13.23□□□□□ -0.29
CD44-210ENST00000434472 ITPRIPQ8IWB1 547 aa13.23□□□□□ -0.29
CD44-210ENST00000434472 IFT57Q9NWB7 429 aa13.23□□□□□ -0.29
CD44-210ENST00000434472 AKAP12Q02952 1782 aa13.22□□□□□ -0.29
CD44-210ENST00000434472 MAP2P11137 1827 aaKnown RBP13.22□□□□□ -0.29
CD44-210ENST00000434472 NME9Q86XW9 330 aa13.22□□□□□ -0.29
CD44-210ENST00000434472 ARHGAP45Q92619 1136 aa13.22□□□□□ -0.29
CD44-210ENST00000434472 ITSN1Q15811 1721 aa13.22□□□□□ -0.29
CD44-210ENST00000434472 USP19O94966 1318 aa13.21□□□□□ -0.29
CD44-210ENST00000434472 UBR1Q8IWV7 1749 aa13.21□□□□□ -0.29
CD44-210ENST00000434472 BCL11AQ9H165 835 aa13.21□□□□□ -0.3
CD44-210ENST00000434472 PLEKHG1Q9ULL1 1385 aa13.21□□□□□ -0.3
CD44-210ENST00000434472 EMILIN1Q9Y6C2 1016 aa13.21□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms