RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 DDX58O95786 925 aaKnown RBP16.27■□□□□ 0.19
PTCH1-207ENST00000429896 PTMAP06454 111 aaKnown RBP16.27■□□□□ 0.19
PTCH1-207ENST00000429896 ABCC3O15438 1527 aa16.26■□□□□ 0.19
PTCH1-207ENST00000429896 TRIM44Q96DX7 344 aaPredicted RBP16.26■□□□□ 0.19
PTCH1-207ENST00000429896 TRPM2O94759 1503 aa16.26■□□□□ 0.19
PTCH1-207ENST00000429896 NSD2O96028 1365 aa16.26■□□□□ 0.19
PTCH1-207ENST00000429896 TCP11L2Q8N4U5 519 aa16.26■□□□□ 0.19
PTCH1-207ENST00000429896 CLUAP1Q96AJ1 413 aa16.25■□□□□ 0.19
PTCH1-207ENST00000429896 PLEKHG1Q9ULL1 1385 aa16.25■□□□□ 0.19
PTCH1-207ENST00000429896 LRRC59Q96AG4 307 aaKnown RBP16.24■□□□□ 0.19
PTCH1-207ENST00000429896 TTC21BQ7Z4L5 1316 aa16.24■□□□□ 0.19
PTCH1-207ENST00000429896 DIP2BQ9P265 1576 aa16.24■□□□□ 0.19
PTCH1-207ENST00000429896 APBB1O00213 710 aa16.24■□□□□ 0.19
PTCH1-207ENST00000429896 HMMRO75330 724 aa16.24■□□□□ 0.19
PTCH1-207ENST00000429896 DNTTIP2Q5QJE6 756 aaKnown RBP16.24■□□□□ 0.19
PTCH1-207ENST00000429896 ZRSR1Q15695 479 aaKnown RBP16.23■□□□□ 0.19
PTCH1-207ENST00000429896 G3V3G9 751 aa16.23■□□□□ 0.19
PTCH1-207ENST00000429896 DCAF8Q5TAQ9 597 aa16.23■□□□□ 0.19
PTCH1-207ENST00000429896 PNISRQ8TF01 805 aaKnown RBP16.23■□□□□ 0.19
PTCH1-207ENST00000429896 ZBED9Q6R2W3 1325 aa16.22■□□□□ 0.19
PTCH1-207ENST00000429896 C11orf95C9JLR9 678 aaPredicted RBP16.22■□□□□ 0.19
PTCH1-207ENST00000429896 PUS7Q96PZ0 661 aaKnown RBP16.22■□□□□ 0.19
PTCH1-207ENST00000429896 EMILIN1Q9Y6C2 1016 aa16.22■□□□□ 0.19
PTCH1-207ENST00000429896 CLSTN1O94985 981 aa16.22■□□□□ 0.19
PTCH1-207ENST00000429896 RGS3P49796 1198 aa16.22■□□□□ 0.19
PTCH1-207ENST00000429896 RWDD1Q9H446 243 aaPredicted RBP16.22■□□□□ 0.19
PTCH1-207ENST00000429896 FCHSD2O94868 740 aa16.22■□□□□ 0.19
PTCH1-207ENST00000429896 BCL2L13Q9BXK5 485 aa16.22■□□□□ 0.19
PTCH1-207ENST00000429896 ANKRD36BQ8N2N9 1353 aa16.21■□□□□ 0.19
PTCH1-207ENST00000429896 GORABQ5T7V8 394 aa16.21■□□□□ 0.19
PTCH1-207ENST00000429896 CDC42BPBQ9Y5S2 1711 aa16.21■□□□□ 0.18
PTCH1-207ENST00000429896 ZKSCAN2Q63HK3 967 aa16.21■□□□□ 0.18
PTCH1-207ENST00000429896 BECN1Q14457 450 aa16.2■□□□□ 0.18
PTCH1-207ENST00000429896 CHRNA2Q15822 529 aa16.2■□□□□ 0.18
PTCH1-207ENST00000429896 USHBP1Q8N6Y0 703 aa16.19■□□□□ 0.18
PTCH1-207ENST00000429896 FKBP5Q13451 457 aaPredicted RBP16.19■□□□□ 0.18
PTCH1-207ENST00000429896 C8orf37Q96NL8 207 aa16.19■□□□□ 0.18
PTCH1-207ENST00000429896 ARHGAP31Q2M1Z3 1444 aa16.18■□□□□ 0.18
PTCH1-207ENST00000429896 AMOTQ4VCS5 1084 aa16.18■□□□□ 0.18
PTCH1-207ENST00000429896 SPRYD3Q8NCJ5 442 aa16.18■□□□□ 0.18
PTCH1-207ENST00000429896 PRDM15P57071 1507 aaPredicted RBP16.18■□□□□ 0.18
PTCH1-207ENST00000429896 HMGB2P26583 209 aaKnown RBP16.18■□□□□ 0.18
PTCH1-207ENST00000429896 API5Q9BZZ5 524 aaKnown RBP16.18■□□□□ 0.18
PTCH1-207ENST00000429896 SLAIN2Q9P270 581 aa16.18■□□□□ 0.18
PTCH1-207ENST00000429896 C9orf78Q9NZ63 289 aaPredicted RBP16.18■□□□□ 0.18
PTCH1-207ENST00000429896 ANKRD24Q8TF21 1146 aa16.17■□□□□ 0.18
PTCH1-207ENST00000429896 TCERG1O14776 1098 aaKnown RBP16.17■□□□□ 0.18
PTCH1-207ENST00000429896 SIRT1Q96EB6 747 aa16.17■□□□□ 0.18
PTCH1-207ENST00000429896 RIC3Q7Z5B4 369 aa16.17■□□□□ 0.18
PTCH1-207ENST00000429896 EXOC5O00471 708 aa16.17■□□□□ 0.18
PTCH1-207ENST00000429896 AIMP1Q12904 312 aaKnown RBP16.17■□□□□ 0.18
PTCH1-207ENST00000429896 KLHL34Q8N239 644 aa16.16■□□□□ 0.18
PTCH1-207ENST00000429896 ISY1Q9ULR0 285 aaKnown RBP16.16■□□□□ 0.18
PTCH1-207ENST00000429896 GNAT3A8MTJ3 354 aa16.16■□□□□ 0.18
PTCH1-207ENST00000429896 CCDC30Q5VVM6 783 aa16.16■□□□□ 0.18
PTCH1-207ENST00000429896 ABCC11Q96J66 1382 aa16.16■□□□□ 0.18
PTCH1-207ENST00000429896 GPATCH3Q96I76 525 aa16.16■□□□□ 0.18
PTCH1-207ENST00000429896 TET3O43151 1660 aa16.16■□□□□ 0.18
PTCH1-207ENST00000429896 KIF6Q6ZMV9 814 aa16.16■□□□□ 0.18
PTCH1-207ENST00000429896 PTPRTO14522 1441 aa16.15■□□□□ 0.18
PTCH1-207ENST00000429896 KCNJ4P48050 445 aa16.15■□□□□ 0.18
PTCH1-207ENST00000429896 CABLES1Q8TDN4 633 aa16.14■□□□□ 0.17
PTCH1-207ENST00000429896 ORAI2Q96SN7 254 aa16.14■□□□□ 0.17
PTCH1-207ENST00000429896 GOLGA6L22H0YM25 854 aa16.14■□□□□ 0.17
PTCH1-207ENST00000429896 TMEM94Q12767 1356 aa16.14■□□□□ 0.17
PTCH1-207ENST00000429896 TMOD3Q9NYL9 352 aa16.14■□□□□ 0.17
PTCH1-207ENST00000429896 BTBD11A6QL63 1104 aa16.14■□□□□ 0.17
PTCH1-207ENST00000429896 DIP2CQ9Y2E4 1556 aa16.13■□□□□ 0.17
PTCH1-207ENST00000429896 NFE2L2Q16236 605 aa16.13■□□□□ 0.17
PTCH1-207ENST00000429896 A2ML1A8K2U0 1454 aa16.13■□□□□ 0.17
PTCH1-207ENST00000429896 FYB1O15117 783 aa16.13■□□□□ 0.17
PTCH1-207ENST00000429896 FGD1P98174 961 aa16.13■□□□□ 0.17
PTCH1-207ENST00000429896 B4GALNT3Q6L9W6 998 aa16.13■□□□□ 0.17
PTCH1-207ENST00000429896 KIF16BQ96L93 1317 aa16.12■□□□□ 0.17
PTCH1-207ENST00000429896 DDRGK1Q96HY6 314 aa16.12■□□□□ 0.17
PTCH1-207ENST00000429896 ANP32EQ9BTT0 268 aa16.12■□□□□ 0.17
PTCH1-207ENST00000429896 FRAT2O75474 233 aaPredicted RBP16.11■□□□□ 0.17
PTCH1-207ENST00000429896 ARHGEF40Q8TER5 1519 aa16.11■□□□□ 0.17
PTCH1-207ENST00000429896 METP08581 1390 aa16.11■□□□□ 0.17
PTCH1-207ENST00000429896 TESK2Q96S53 571 aa16.11■□□□□ 0.17
PTCH1-207ENST00000429896 CFAP65Q6ZU64 1925 aaKnown RBP16.11■□□□□ 0.17
PTCH1-207ENST00000429896 IQGAP3Q86VI3 1631 aa16.1■□□□□ 0.17
PTCH1-207ENST00000429896 KDM5CP41229 1560 aa16.1■□□□□ 0.17
PTCH1-207ENST00000429896 ERICH6BQ5W0A0 696 aa16.1■□□□□ 0.17
PTCH1-207ENST00000429896 COL17A1Q9UMD9 1497 aaPredicted RBP16.1■□□□□ 0.17
PTCH1-207ENST00000429896 CROCC2H7BZ55 1655 aa16.1■□□□□ 0.17
PTCH1-207ENST00000429896 CFAP44Q96MT7 982 aa16.1■□□□□ 0.17
PTCH1-207ENST00000429896 TWISTNBQ3B726 338 aaPredicted RBP16.09■□□□□ 0.17
PTCH1-207ENST00000429896 MYOM2P54296 1465 aa16.09■□□□□ 0.17
PTCH1-207ENST00000429896 A0A1W2PP64 1363 aa16.08■□□□□ 0.17
PTCH1-207ENST00000429896 GCP02774 474 aa16.08■□□□□ 0.16
PTCH1-207ENST00000429896 DZIP1LQ8IYY4 767 aaKnown RBP16.08■□□□□ 0.16
PTCH1-207ENST00000429896 NAP1L5Q96NT1 182 aaPredicted RBP16.08■□□□□ 0.16
PTCH1-207ENST00000429896 WDR63Q8IWG1 891 aa16.08■□□□□ 0.16
PTCH1-207ENST00000429896 HDGFL1Q5TGJ6 251 aa16.08■□□□□ 0.16
PTCH1-207ENST00000429896 PLEKHH1Q9ULM0 1364 aa16.08■□□□□ 0.16
PTCH1-207ENST00000429896 ZNF335Q9H4Z2 1342 aaPredicted RBP16.08■□□□□ 0.16
PTCH1-207ENST00000429896 ZRANB1Q9UGI0 708 aa16.07■□□□□ 0.16
PTCH1-207ENST00000429896 ARHGEF10O15013 1369 aa16.07■□□□□ 0.16
PTCH1-207ENST00000429896 EXOSC9Q06265 439 aaKnown RBP16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms