RNA–Protein interactions for RNA: ENST00000410016.5

HOXD3-202, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HOXD3, Length 2,384 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-202ENST00000410016 USP19O94966 1318 aa20.39■□□□□ 0.86
HOXD3-202ENST00000410016 CYB5RLQ6IPT4 315 aa20.38■□□□□ 0.85
HOXD3-202ENST00000410016 TSR2Q969E8 191 aaKnown RBP20.38■□□□□ 0.85
HOXD3-202ENST00000410016 CABP1Q9NZU7 370 aa20.37■□□□□ 0.85
HOXD3-202ENST00000410016 MVPQ14764 893 aaKnown RBP20.36■□□□□ 0.85
HOXD3-202ENST00000410016 HDGFL2Q7Z4V5 671 aaPredicted RBP20.36■□□□□ 0.85
HOXD3-202ENST00000410016 SEC24BO95487 1268 aa20.35■□□□□ 0.85
HOXD3-202ENST00000410016 EXOSC9Q06265 439 aaKnown RBP20.35■□□□□ 0.85
HOXD3-202ENST00000410016 ZKSCAN2Q63HK3 967 aa20.35■□□□□ 0.85
HOXD3-202ENST00000410016 PPP6R1Q9UPN7 881 aa20.35■□□□□ 0.85
HOXD3-202ENST00000410016 FAM69CQ0P6D2 419 aa20.35■□□□□ 0.85
HOXD3-202ENST00000410016 ANKRD26Q9UPS8 1709 aa20.34■□□□□ 0.85
HOXD3-202ENST00000410016 IL16Q14005 1332 aa20.34■□□□□ 0.85
HOXD3-202ENST00000410016 DIAPH1O60610 1272 aaKnown RBP20.34■□□□□ 0.85
HOXD3-202ENST00000410016 DAXXQ9UER7 740 aaPredicted RBP20.34■□□□□ 0.85
HOXD3-202ENST00000410016 STAG3Q9UJ98 1225 aa20.34■□□□□ 0.85
HOXD3-202ENST00000410016 DZIP1LQ8IYY4 767 aaKnown RBP20.33■□□□□ 0.85
HOXD3-202ENST00000410016 ZMYM3Q14202 1370 aa20.32■□□□□ 0.84
HOXD3-202ENST00000410016 RWDD1Q9H446 243 aaPredicted RBP20.32■□□□□ 0.84
HOXD3-202ENST00000410016 PDZRN3Q9UPQ7 1066 aa20.32■□□□□ 0.84
HOXD3-202ENST00000410016 RIPK4P57078 832 aa20.31■□□□□ 0.84
HOXD3-202ENST00000410016 SSH1Q8WYL5 1049 aa20.31■□□□□ 0.84
HOXD3-202ENST00000410016 A2ML1A8K2U0 1454 aa20.31■□□□□ 0.84
HOXD3-202ENST00000410016 NFKBIBQ15653 356 aa20.31■□□□□ 0.84
HOXD3-202ENST00000410016 WAPLQ7Z5K2 1190 aa20.31■□□□□ 0.84
HOXD3-202ENST00000410016 VIRMAQ69YN4 1812 aaKnown RBP20.31■□□□□ 0.84
HOXD3-202ENST00000410016 AGLP35573 1532 aa20.31■□□□□ 0.84
HOXD3-202ENST00000410016 TRIM27P14373 513 aa20.3■□□□□ 0.84
HOXD3-202ENST00000410016 REREQ9P2R6 1566 aa20.3■□□□□ 0.84
HOXD3-202ENST00000410016 SMC4Q9NTJ3 1288 aa20.3■□□□□ 0.84
HOXD3-202ENST00000410016 DLC1Q96QB1 1528 aa20.3■□□□□ 0.84
HOXD3-202ENST00000410016 FCHSD2O94868 740 aa20.29■□□□□ 0.84
HOXD3-202ENST00000410016 FTSJ3Q8IY81 847 aaKnown RBP20.29■□□□□ 0.84
HOXD3-202ENST00000410016 PNNQ9H307 717 aaKnown RBP20.28■□□□□ 0.84
HOXD3-202ENST00000410016 POLKQ9UBT6 870 aa20.28■□□□□ 0.84
HOXD3-202ENST00000410016 FBLN1P23142 703 aa20.28■□□□□ 0.84
HOXD3-202ENST00000410016 ATF7IPQ6VMQ6 1270 aa20.27■□□□□ 0.83
HOXD3-202ENST00000410016 SPATA31D1Q6ZQQ2 1576 aa20.26■□□□□ 0.83
HOXD3-202ENST00000410016 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.26■□□□□ 0.83
HOXD3-202ENST00000410016 DIP2BQ9P265 1576 aa20.26■□□□□ 0.83
HOXD3-202ENST00000410016 RIMS2Q9UQ26 1411 aa20.26■□□□□ 0.83
HOXD3-202ENST00000410016 CDC42BPGQ6DT37 1551 aa20.26■□□□□ 0.83
HOXD3-202ENST00000410016 ATP7BP35670 1465 aa20.26■□□□□ 0.83
HOXD3-202ENST00000410016 RSPH6AQ9H0K4 717 aa20.26■□□□□ 0.83
HOXD3-202ENST00000410016 NOB1Q9ULX3 412 aaKnown RBP20.26■□□□□ 0.83
HOXD3-202ENST00000410016 SETD1AO15047 1707 aaKnown RBP20.24■□□□□ 0.83
HOXD3-202ENST00000410016 KIF20BQ96Q89 1820 aa20.23■□□□□ 0.83
HOXD3-202ENST00000410016 HDAC1Q13547 482 aaPredicted RBP20.23■□□□□ 0.83
HOXD3-202ENST00000410016 DDX19BQ9UMR2 479 aa20.23■□□□□ 0.83
HOXD3-202ENST00000410016 PRKAR2BP31323 418 aa20.22■□□□□ 0.83
HOXD3-202ENST00000410016 CPSF1Q10570 1443 aaKnown RBP20.22■□□□□ 0.83
HOXD3-202ENST00000410016 FAM135BQ49AJ0 1406 aa20.22■□□□□ 0.83
HOXD3-202ENST00000410016 LRRC7Q96NW7 1537 aa20.22■□□□□ 0.83
HOXD3-202ENST00000410016 ITPRIPQ8IWB1 547 aa20.21■□□□□ 0.83
HOXD3-202ENST00000410016 RIMBP3CA6NJZ7 1639 aa20.2■□□□□ 0.82
HOXD3-202ENST00000410016 RIMBP3BA6NNM3 1639 aa20.2■□□□□ 0.82
HOXD3-202ENST00000410016 RIMBP3Q9UFD9 1639 aa20.2■□□□□ 0.82
HOXD3-202ENST00000410016 WASLO00401 505 aaPredicted RBP20.2■□□□□ 0.82
HOXD3-202ENST00000410016 TMEM57Q8N5G2 664 aa20.2■□□□□ 0.82
HOXD3-202ENST00000410016 PHACTR3Q96KR7 559 aa20.2■□□□□ 0.82
HOXD3-202ENST00000410016 ZBTB40Q9NUA8 1239 aa20.2■□□□□ 0.82
HOXD3-202ENST00000410016 ALDH1L2Q3SY69 923 aa20.2■□□□□ 0.82
HOXD3-202ENST00000410016 TBC1D32Q96NH3 1257 aa20.2■□□□□ 0.82
HOXD3-202ENST00000410016 METP08581 1390 aa20.19■□□□□ 0.82
HOXD3-202ENST00000410016 KIF16BQ96L93 1317 aa20.18■□□□□ 0.82
HOXD3-202ENST00000410016 BRPF1P55201 1214 aaPredicted RBP20.18■□□□□ 0.82
HOXD3-202ENST00000410016 MLECQ14165 292 aa20.18■□□□□ 0.82
HOXD3-202ENST00000410016 SMC5Q8IY18 1101 aa20.18■□□□□ 0.82
HOXD3-202ENST00000410016 IPO8O15397 1037 aaKnown RBP20.17■□□□□ 0.82
HOXD3-202ENST00000410016 IL13P35225 146 aa20.17■□□□□ 0.82
HOXD3-202ENST00000410016 EMILIN1Q9Y6C2 1016 aa20.17■□□□□ 0.82
HOXD3-202ENST00000410016 EDC4Q6P2E9 1401 aaKnown RBP20.17■□□□□ 0.82
HOXD3-202ENST00000410016 PPIP5K1Q6PFW1 1433 aa20.17■□□□□ 0.82
HOXD3-202ENST00000410016 NRXN3Q9Y4C0 1643 aa20.17■□□□□ 0.82
HOXD3-202ENST00000410016 TSPOAP1O95153 1857 aa20.17■□□□□ 0.82
HOXD3-202ENST00000410016 NFE2L2Q16236 605 aa20.17■□□□□ 0.82
HOXD3-202ENST00000410016 FRAT2O75474 233 aaPredicted RBP20.16■□□□□ 0.82
HOXD3-202ENST00000410016 NME9Q86XW9 330 aa20.16■□□□□ 0.82
HOXD3-202ENST00000410016 HMOX1P09601 288 aa20.16■□□□□ 0.82
HOXD3-202ENST00000410016 GSE1Q14687 1217 aa20.16■□□□□ 0.82
HOXD3-202ENST00000410016 ZNF428Q96B54 188 aa20.16■□□□□ 0.82
HOXD3-202ENST00000410016 TXNDC2Q86VQ3 553 aa20.15■□□□□ 0.82
HOXD3-202ENST00000410016 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.15■□□□□ 0.82
HOXD3-202ENST00000410016 UPF2Q9HAU5 1272 aaKnown RBP20.15■□□□□ 0.82
HOXD3-202ENST00000410016 ZRANB1Q9UGI0 708 aa20.15■□□□□ 0.82
HOXD3-202ENST00000410016 AATKQ6ZMQ8 1374 aa20.15■□□□□ 0.82
HOXD3-202ENST00000410016 BECN1Q14457 450 aa20.14■□□□□ 0.82
HOXD3-202ENST00000410016 SIRT1Q96EB6 747 aa20.14■□□□□ 0.82
HOXD3-202ENST00000410016 NUDT16Q96DE0 195 aaKnown RBP20.14■□□□□ 0.81
HOXD3-202ENST00000410016 MAP2P11137 1827 aaKnown RBP20.14■□□□□ 0.81
HOXD3-202ENST00000410016 VAMP4O75379 141 aa20.13■□□□□ 0.81
HOXD3-202ENST00000410016 THUMPD2Q9BTF0 503 aaKnown RBP20.13■□□□□ 0.81
HOXD3-202ENST00000410016 CCDC61Q9Y6R9 512 aa20.13■□□□□ 0.81
HOXD3-202ENST00000410016 NCKAP5LQ9HCH0 1330 aa20.13■□□□□ 0.81
HOXD3-202ENST00000410016 ZNF853P0CG23 659 aa20.12■□□□□ 0.81
HOXD3-202ENST00000410016 CDK12Q9NYV4 1490 aaPredicted RBP20.12■□□□□ 0.81
HOXD3-202ENST00000410016 TECPR2O15040 1411 aa20.11■□□□□ 0.81
HOXD3-202ENST00000410016 ANTXR1Q9H6X2 564 aa20.1■□□□□ 0.81
HOXD3-202ENST00000410016 TSPYL6Q8N831 410 aa20.1■□□□□ 0.81
HOXD3-202ENST00000410016 IFT57Q9NWB7 429 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 84.6 ms