RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 NKTRP30414 1462 aaKnown RBP4.97□□□□□ -1.61
RTN4-208ENST00000404909 ANKARQ7Z5J8 1434 aa4.97□□□□□ -1.61
RTN4-208ENST00000404909 CDC42BPGQ6DT37 1551 aa4.97□□□□□ -1.61
RTN4-208ENST00000404909 NALCNQ8IZF0 1738 aa4.97□□□□□ -1.61
RTN4-208ENST00000404909 NWD1Q149M9 1564 aa4.96□□□□□ -1.61
RTN4-208ENST00000404909 SALL2Q9Y467 1007 aaPredicted RBP4.96□□□□□ -1.61
RTN4-208ENST00000404909 USP6P35125 1406 aa4.96□□□□□ -1.62
RTN4-208ENST00000404909 MSH6P52701 1360 aa4.96□□□□□ -1.62
RTN4-208ENST00000404909 LMOD2Q6P5Q4 547 aa4.96□□□□□ -1.62
RTN4-208ENST00000404909 CADPS2Q86UW7 1296 aa4.96□□□□□ -1.62
RTN4-208ENST00000404909 ADAMTS8Q9UP79 889 aa4.96□□□□□ -1.62
RTN4-208ENST00000404909 USP32Q8NFA0 1604 aa4.96□□□□□ -1.62
RTN4-208ENST00000404909 ABTB2Q8N961 1025 aa4.96□□□□□ -1.62
RTN4-208ENST00000404909 CFAP53Q96M91 514 aa4.96□□□□□ -1.62
RTN4-208ENST00000404909 RGPD8O14715 1765 aaPredicted RBP4.96□□□□□ -1.62
RTN4-208ENST00000404909 NLRP6P59044 892 aa4.95□□□□□ -1.62
RTN4-208ENST00000404909 RRS1Q15050 365 aaKnown RBP4.95□□□□□ -1.62
RTN4-208ENST00000404909 POLR3AO14802 1390 aaPredicted RBP4.95□□□□□ -1.62
RTN4-208ENST00000404909 STRCP1A6NGW2 1772 aa4.95□□□□□ -1.62
RTN4-208ENST00000404909 DDX17Q92841 729 aaKnown RBP4.95□□□□□ -1.62
RTN4-208ENST00000404909 EMILIN1Q9Y6C2 1016 aa4.95□□□□□ -1.62
RTN4-208ENST00000404909 FMN2Q9NZ56 1722 aa4.95□□□□□ -1.62
RTN4-208ENST00000404909 CCDC146Q8IYE0 955 aa4.95□□□□□ -1.62
RTN4-208ENST00000404909 ITSN1Q15811 1721 aa4.94□□□□□ -1.62
RTN4-208ENST00000404909 TTC21AQ8NDW8 1320 aa4.94□□□□□ -1.62
RTN4-208ENST00000404909 TOPAZ1Q8N9V7 1692 aa4.94□□□□□ -1.62
RTN4-208ENST00000404909 C1orf167Q5SNV9 1468 aa4.94□□□□□ -1.62
RTN4-208ENST00000404909 U2SURPO15042 1029 aaKnown RBP4.94□□□□□ -1.62
RTN4-208ENST00000404909 POLKQ9UBT6 870 aa4.94□□□□□ -1.62
RTN4-208ENST00000404909 LRRC7Q96NW7 1537 aa4.94□□□□□ -1.62
RTN4-208ENST00000404909 U2AF1L5P0DN76 240 aaPredicted RBP4.94□□□□□ -1.62
RTN4-208ENST00000404909 U2AF1Q01081 240 aaKnown RBP eCLIP4.94□□□□□ -1.624e-6■□□□□ 9.4
RTN4-208ENST00000404909 KRT28Q7Z3Y7 464 aa4.94□□□□□ -1.62
RTN4-208ENST00000404909 NCOA3Q9Y6Q9 1424 aa4.93□□□□□ -1.62
RTN4-208ENST00000404909 ZBTB7CA1YPR0 619 aa4.93□□□□□ -1.62
RTN4-208ENST00000404909 SLAIN2Q9P270 581 aa4.93□□□□□ -1.62
RTN4-208ENST00000404909 MON2Q7Z3U7 1717 aa4.93□□□□□ -1.62
RTN4-208ENST00000404909 AKAP12Q02952 1782 aa4.93□□□□□ -1.62
RTN4-208ENST00000404909 MST1RQ04912 1400 aa4.93□□□□□ -1.62
RTN4-208ENST00000404909 SSH2Q76I76 1423 aa4.93□□□□□ -1.62
RTN4-208ENST00000404909 NUDCQ9Y266 331 aa4.93□□□□□ -1.62
RTN4-208ENST00000404909 SCAF1Q9H7N4 1312 aaKnown RBP4.93□□□□□ -1.62
RTN4-208ENST00000404909 KIF20BQ96Q89 1820 aa4.93□□□□□ -1.62
RTN4-208ENST00000404909 DIAPH1O60610 1272 aaKnown RBP4.93□□□□□ -1.62
RTN4-208ENST00000404909 DCCP43146 1447 aa4.93□□□□□ -1.62
RTN4-208ENST00000404909 ZBED9Q6R2W3 1325 aa4.93□□□□□ -1.62
RTN4-208ENST00000404909 AMPHP49418 695 aa4.92□□□□□ -1.62
RTN4-208ENST00000404909 BRINP3Q76B58 766 aa4.92□□□□□ -1.62
RTN4-208ENST00000404909 APAF1O14727 1248 aa4.92□□□□□ -1.62
RTN4-208ENST00000404909 NEUROD2Q15784 382 aa4.92□□□□□ -1.62
RTN4-208ENST00000404909 OVOS2A0A0J9YW53 1432 aa4.92□□□□□ -1.62
RTN4-208ENST00000404909 OVOS2Q6IE36 1432 aa4.92□□□□□ -1.62
RTN4-208ENST00000404909 NPHP3Q7Z494 1330 aa4.92□□□□□ -1.62
RTN4-208ENST00000404909 AATKQ6ZMQ8 1374 aa4.92□□□□□ -1.62
RTN4-208ENST00000404909 HSP90AB2PQ58FF8 381 aa4.91□□□□□ -1.62
RTN4-208ENST00000404909 MAP3K19Q56UN5 1328 aa4.91□□□□□ -1.62
RTN4-208ENST00000404909 NRKQ7Z2Y5 1582 aa4.91□□□□□ -1.62
RTN4-208ENST00000404909 HMOX1P09601 288 aa4.91□□□□□ -1.62
RTN4-208ENST00000404909 RRP7AQ9Y3A4 280 aaKnown RBP4.91□□□□□ -1.62
RTN4-208ENST00000404909 ANKRD26Q9UPS8 1709 aa4.91□□□□□ -1.62
RTN4-208ENST00000404909 USP31Q70CQ4 1352 aa4.91□□□□□ -1.62
RTN4-208ENST00000404909 LTV1Q96GA3 475 aaPredicted RBP4.91□□□□□ -1.62
RTN4-208ENST00000404909 MAP2P11137 1827 aaKnown RBP4.9□□□□□ -1.62
RTN4-208ENST00000404909 PNPLA6Q8IY17 1366 aa4.9□□□□□ -1.62
RTN4-208ENST00000404909 BLMP54132 1417 aaPredicted RBP4.9□□□□□ -1.62
RTN4-208ENST00000404909 CABLES1Q8TDN4 633 aa4.9□□□□□ -1.62
RTN4-208ENST00000404909 XIRP1Q702N8 1843 aaKnown RBP4.9□□□□□ -1.63
RTN4-208ENST00000404909 GCP02774 474 aa4.9□□□□□ -1.63
RTN4-208ENST00000404909 RUNDC1Q96C34 613 aa4.9□□□□□ -1.63
RTN4-208ENST00000404909 PIK3C2AO00443 1686 aa4.9□□□□□ -1.63
RTN4-208ENST00000404909 IL13P35225 146 aa4.9□□□□□ -1.63
RTN4-208ENST00000404909 EIF4A2Q14240 407 aaKnown RBP4.9□□□□□ -1.63
RTN4-208ENST00000404909 TCP11L2Q8N4U5 519 aa4.9□□□□□ -1.63
RTN4-208ENST00000404909 KCNH5Q8NCM2 988 aa4.9□□□□□ -1.63
RTN4-208ENST00000404909 PHF23Q9BUL5 403 aaPredicted RBP4.9□□□□□ -1.63
RTN4-208ENST00000404909 MAPK8IP3Q9UPT6 1336 aa4.9□□□□□ -1.63
RTN4-208ENST00000404909 ZC3H6P61129 1189 aaKnown RBP4.89□□□□□ -1.63
RTN4-208ENST00000404909 CDCA7LQ96GN5 454 aa4.89□□□□□ -1.63
RTN4-208ENST00000404909 NEFMP07197 916 aa4.89□□□□□ -1.63
RTN4-208ENST00000404909 PRKAR2BP31323 418 aa4.89□□□□□ -1.63
RTN4-208ENST00000404909 PIP4K2BP78356 416 aa4.89□□□□□ -1.63
RTN4-208ENST00000404909 FLT4P35916 1363 aa4.89□□□□□ -1.63
RTN4-208ENST00000404909 COL3A1P02461 1466 aaPredicted RBP4.89□□□□□ -1.63
RTN4-208ENST00000404909 CDK12Q9NYV4 1490 aaPredicted RBP4.89□□□□□ -1.63
RTN4-208ENST00000404909 SBNO1A3KN83 1393 aa4.89□□□□□ -1.63
RTN4-208ENST00000404909 INSRP06213 1382 aa4.89□□□□□ -1.63
RTN4-208ENST00000404909 HOXC9P31274 260 aa4.89□□□□□ -1.63
RTN4-208ENST00000404909 HAP1P54257 671 aaPredicted RBP4.89□□□□□ -1.63
RTN4-208ENST00000404909 KIF1AQ12756 1690 aa4.88□□□□□ -1.63
RTN4-208ENST00000404909 FCHSD2O94868 740 aa4.88□□□□□ -1.63
RTN4-208ENST00000404909 SULT6B1Q6IMI4 303 aa4.88□□□□□ -1.63
RTN4-208ENST00000404909 AEBP1Q8IUX7 1158 aa4.88□□□□□ -1.63
RTN4-208ENST00000404909 GTF3C3Q9Y5Q9 886 aa4.88□□□□□ -1.63
RTN4-208ENST00000404909 SMG6Q86US8 1419 aaKnown RBP4.88□□□□□ -1.63
RTN4-208ENST00000404909 SPATA31A3Q5VYP0 1347 aa4.88□□□□□ -1.63
RTN4-208ENST00000404909 PNNQ9H307 717 aaKnown RBP4.88□□□□□ -1.63
RTN4-208ENST00000404909 SHPRHQ149N8 1683 aa4.88□□□□□ -1.63
RTN4-208ENST00000404909 RSPH6AQ9H0K4 717 aa4.88□□□□□ -1.63
RTN4-208ENST00000404909 TNS3Q68CZ2 1445 aa4.88□□□□□ -1.63
RTN4-208ENST00000404909 IP6K1Q92551 441 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms