RNA–Protein interactions for RNA: ENST00000399804.5

SCAF4-202, Transcript of SR-related CTD associated factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF4, Length 4,127 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-202ENST00000399804 PHF8Q9UPP1 1060 aa17.55■□□□□ 0.4
SCAF4-202ENST00000399804 A0A1W2PP64 1363 aa17.55■□□□□ 0.4
SCAF4-202ENST00000399804 CT47B1P0C2W7 299 aaPredicted RBP17.55■□□□□ 0.4
SCAF4-202ENST00000399804 RARSP54136 660 aaKnown RBP17.55■□□□□ 0.4
SCAF4-202ENST00000399804 EVA1CP58658 441 aa17.55■□□□□ 0.4
SCAF4-202ENST00000399804 AAMPQ13685 434 aa17.55■□□□□ 0.4
SCAF4-202ENST00000399804 HSCBQ8IWL3 235 aa17.55■□□□□ 0.4
SCAF4-202ENST00000399804 ATF7IPQ6VMQ6 1270 aa17.54■□□□□ 0.4
SCAF4-202ENST00000399804 PRDM15P57071 1507 aaPredicted RBP17.54■□□□□ 0.4
SCAF4-202ENST00000399804 LNPKQ9C0E8 428 aa17.54■□□□□ 0.4
SCAF4-202ENST00000399804 KDM5CP41229 1560 aa17.54■□□□□ 0.4
SCAF4-202ENST00000399804 SHROOM2Q13796 1616 aa17.53■□□□□ 0.4
SCAF4-202ENST00000399804 CFAP74Q9C0B2 1584 aa17.53■□□□□ 0.4
SCAF4-202ENST00000399804 POLR3AO14802 1390 aaPredicted RBP17.53■□□□□ 0.4
SCAF4-202ENST00000399804 LRPPRCP42704 1394 aaKnown RBP17.53■□□□□ 0.4
SCAF4-202ENST00000399804 SLKQ9H2G2 1235 aaPredicted RBP17.53■□□□□ 0.4
SCAF4-202ENST00000399804 CCDC9Q9Y3X0 531 aaKnown RBP17.52■□□□□ 0.4
SCAF4-202ENST00000399804 PIK3C2GO75747 1445 aa17.52■□□□□ 0.4
SCAF4-202ENST00000399804 POLKQ9UBT6 870 aa17.52■□□□□ 0.4
SCAF4-202ENST00000399804 PPIP5K1Q6PFW1 1433 aa17.52■□□□□ 0.39
SCAF4-202ENST00000399804 NKTRP30414 1462 aaKnown RBP17.52■□□□□ 0.39
SCAF4-202ENST00000399804 SLC4A3P48751 1232 aa17.52■□□□□ 0.39
SCAF4-202ENST00000399804 SSH1Q8WYL5 1049 aa17.52■□□□□ 0.39
SCAF4-202ENST00000399804 MCM10Q7L590 875 aa17.51■□□□□ 0.39
SCAF4-202ENST00000399804 NPC1L1Q9UHC9 1359 aa17.51■□□□□ 0.39
SCAF4-202ENST00000399804 PLEKHH1Q9ULM0 1364 aa17.51■□□□□ 0.39
SCAF4-202ENST00000399804 CROCC2H7BZ55 1655 aa17.51■□□□□ 0.39
SCAF4-202ENST00000399804 TTC21BQ7Z4L5 1316 aa17.51■□□□□ 0.39
SCAF4-202ENST00000399804 KCNJ4P48050 445 aa17.5■□□□□ 0.39
SCAF4-202ENST00000399804 RTN4Q9NQC3 1192 aaKnown RBP17.5■□□□□ 0.39
SCAF4-202ENST00000399804 CFAP44Q96MT7 982 aa17.5■□□□□ 0.39
SCAF4-202ENST00000399804 ZC3H6P61129 1189 aaKnown RBP17.5■□□□□ 0.39
SCAF4-202ENST00000399804 MVPQ14764 893 aaKnown RBP17.5■□□□□ 0.39
SCAF4-202ENST00000399804 IQGAP3Q86VI3 1631 aa17.5■□□□□ 0.39
SCAF4-202ENST00000399804 HDAC5Q9UQL6 1122 aa17.49■□□□□ 0.39
SCAF4-202ENST00000399804 TRIM6-TRIM34B2RNG4 842 aa17.49■□□□□ 0.39
SCAF4-202ENST00000399804 SLC4A2P04920 1241 aa17.49■□□□□ 0.39
SCAF4-202ENST00000399804 PLEKHO1Q53GL0 409 aaPredicted RBP17.49■□□□□ 0.39
SCAF4-202ENST00000399804 SKAP1Q86WV1 359 aa17.49■□□□□ 0.39
SCAF4-202ENST00000399804 TTC5Q8N0Z6 440 aa17.49■□□□□ 0.39
SCAF4-202ENST00000399804 C1orf115Q9H7X2 142 aa17.49■□□□□ 0.39
SCAF4-202ENST00000399804 MIS18AQ9NYP9 233 aa17.49■□□□□ 0.39
SCAF4-202ENST00000399804 HSP90AB2PQ58FF8 381 aa17.49■□□□□ 0.39
SCAF4-202ENST00000399804 HECW2Q9P2P5 1572 aa17.49■□□□□ 0.39
SCAF4-202ENST00000399804 KCNA6P17658 529 aa17.48■□□□□ 0.39
SCAF4-202ENST00000399804 PDZRN3Q9UPQ7 1066 aa17.48■□□□□ 0.39
SCAF4-202ENST00000399804 MAGI2Q86UL8 1455 aa17.48■□□□□ 0.39
SCAF4-202ENST00000399804 TBX22Q9Y458 520 aa17.48■□□□□ 0.39
SCAF4-202ENST00000399804 ABCC11Q96J66 1382 aa17.47■□□□□ 0.39
SCAF4-202ENST00000399804 ZNF530Q6P9A1 599 aaPredicted RBP17.47■□□□□ 0.39
SCAF4-202ENST00000399804 CHMP3Q9Y3E7 222 aa17.47■□□□□ 0.39
SCAF4-202ENST00000399804 LTKP29376 864 aa17.47■□□□□ 0.39
SCAF4-202ENST00000399804 GOLGA6L22H0YM25 854 aa17.46■□□□□ 0.39
SCAF4-202ENST00000399804 TSPOAP1O95153 1857 aa17.46■□□□□ 0.39
SCAF4-202ENST00000399804 SBNO2Q9Y2G9 1366 aa17.46■□□□□ 0.39
SCAF4-202ENST00000399804 SPINK5Q9NQ38 1064 aaPredicted RBP17.46■□□□□ 0.39
SCAF4-202ENST00000399804 C9orf78Q9NZ63 289 aaPredicted RBP17.46■□□□□ 0.39
SCAF4-202ENST00000399804 UNC13BO14795 1591 aa17.46■□□□□ 0.38
SCAF4-202ENST00000399804 CCDC30Q5VVM6 783 aa17.45■□□□□ 0.38
SCAF4-202ENST00000399804 USHBP1Q8N6Y0 703 aa17.45■□□□□ 0.38
SCAF4-202ENST00000399804 ABCA9Q8IUA7 1624 aa17.45■□□□□ 0.38
SCAF4-202ENST00000399804 FAM83GA6ND36 823 aa17.45■□□□□ 0.38
SCAF4-202ENST00000399804 TMEM57Q8N5G2 664 aa17.45■□□□□ 0.38
SCAF4-202ENST00000399804 KCNH5Q8NCM2 988 aa17.45■□□□□ 0.38
SCAF4-202ENST00000399804 ZNF428Q96B54 188 aa17.45■□□□□ 0.38
SCAF4-202ENST00000399804 MCCP23508 829 aa17.44■□□□□ 0.38
SCAF4-202ENST00000399804 ANP32BQ92688 251 aaKnown RBP17.44■□□□□ 0.38
SCAF4-202ENST00000399804 USP35Q9P2H5 1018 aa17.44■□□□□ 0.38
SCAF4-202ENST00000399804 TMEM2Q9UHN6 1383 aa17.44■□□□□ 0.38
SCAF4-202ENST00000399804 IFT57Q9NWB7 429 aa17.44■□□□□ 0.38
SCAF4-202ENST00000399804 MYOM2P54296 1465 aa17.43■□□□□ 0.38
SCAF4-202ENST00000399804 TET3O43151 1660 aa17.43■□□□□ 0.38
SCAF4-202ENST00000399804 ABCC3O15438 1527 aa17.43■□□□□ 0.38
SCAF4-202ENST00000399804 HDGFL1Q5TGJ6 251 aa17.43■□□□□ 0.38
SCAF4-202ENST00000399804 EFCAB6Q5THR3 1501 aa17.43■□□□□ 0.38
SCAF4-202ENST00000399804 AIMP1Q12904 312 aaKnown RBP17.42■□□□□ 0.38
SCAF4-202ENST00000399804 KIAA1211Q6ZU35 1233 aa17.42■□□□□ 0.38
SCAF4-202ENST00000399804 NCLP19338 710 aaKnown RBP17.42■□□□□ 0.38
SCAF4-202ENST00000399804 ERVK-7P63135 1459 aa17.42■□□□□ 0.38
SCAF4-202ENST00000399804 AEBP1Q8IUX7 1158 aa17.42■□□□□ 0.38
SCAF4-202ENST00000399804 BACH2Q9BYV9 841 aa17.42■□□□□ 0.38
SCAF4-202ENST00000399804 NPHP1O15259 732 aa17.41■□□□□ 0.38
SCAF4-202ENST00000399804 NEXNQ0ZGT2 675 aa17.41■□□□□ 0.38
SCAF4-202ENST00000399804 GNAT3A8MTJ3 354 aa17.41■□□□□ 0.38
SCAF4-202ENST00000399804 CCDC27Q2M243 656 aa17.4■□□□□ 0.38
SCAF4-202ENST00000399804 RILPL2Q969X0 211 aa17.4■□□□□ 0.38
SCAF4-202ENST00000399804 DDX58O95786 925 aaKnown RBP17.4■□□□□ 0.38
SCAF4-202ENST00000399804 TRIM27P14373 513 aa17.4■□□□□ 0.38
SCAF4-202ENST00000399804 PHACTR3Q96KR7 559 aa17.4■□□□□ 0.38
SCAF4-202ENST00000399804 TATP17735 454 aaPredicted RBP17.39■□□□□ 0.37
SCAF4-202ENST00000399804 EIF4A2Q14240 407 aaKnown RBP17.39■□□□□ 0.37
SCAF4-202ENST00000399804 STRN4Q9NRL3 753 aa17.39■□□□□ 0.37
SCAF4-202ENST00000399804 DMRT2Q9Y5R5 561 aa17.39■□□□□ 0.37
SCAF4-202ENST00000399804 CLTCL1P53675 1640 aa17.39■□□□□ 0.37
SCAF4-202ENST00000399804 TTC21AQ8NDW8 1320 aa17.38■□□□□ 0.37
SCAF4-202ENST00000399804 PRDM11Q9NQV5 511 aa17.38■□□□□ 0.37
SCAF4-202ENST00000399804 TPRNQ4KMQ1 711 aa17.38■□□□□ 0.37
SCAF4-202ENST00000399804 UBTFL1P0CB47 393 aaPredicted RBP17.38■□□□□ 0.37
SCAF4-202ENST00000399804 FGD1P98174 961 aa17.38■□□□□ 0.37
SCAF4-202ENST00000399804 ALDH1L2Q3SY69 923 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms