RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 SYNE3Q6ZMZ3 975 aa5.92□□□□□ -1.46
PCDH9-201ENST00000377861 THEMISQ8N1K5 641 aaPredicted RBP5.92□□□□□ -1.46
PCDH9-201ENST00000377861 DNAAF4Q8WXU2 420 aa5.92□□□□□ -1.46
PCDH9-201ENST00000377861 BMP15O95972 392 aa5.92□□□□□ -1.46
PCDH9-201ENST00000377861 NASPP49321 788 aaPredicted RBP5.92□□□□□ -1.46
PCDH9-201ENST00000377861 HNRNPMP52272 730 aaKnown RBP eCLIP5.92□□□□□ -1.46
PCDH9-201ENST00000377861 TEX13AQ9BXU3 409 aaPredicted RBP5.92□□□□□ -1.46
PCDH9-201ENST00000377861 DACH1Q9UI36 760 aa5.92□□□□□ -1.46
PCDH9-201ENST00000377861 GNAI2P04899 355 aa5.92□□□□□ -1.46
PCDH9-201ENST00000377861 AMER1Q5JTC6 1135 aaPredicted RBP5.92□□□□□ -1.46
PCDH9-201ENST00000377861 TBC1D32Q96NH3 1257 aa5.92□□□□□ -1.46
PCDH9-201ENST00000377861 CCDC47Q96A33 483 aaKnown RBP5.92□□□□□ -1.46
PCDH9-201ENST00000377861 IQCDQ96DY2 449 aa5.92□□□□□ -1.46
PCDH9-201ENST00000377861 ZNF396Q96N95 335 aaPredicted RBP5.92□□□□□ -1.46
PCDH9-201ENST00000377861 ZSCAN16Q9H4T2 348 aaPredicted RBP5.92□□□□□ -1.46
PCDH9-201ENST00000377861 POTEB2H3BUK9 544 aa5.92□□□□□ -1.46
PCDH9-201ENST00000377861 GTF2F1P35269 517 aaKnown RBP eCLIP5.92□□□□□ -1.46
PCDH9-201ENST00000377861 K7ELQ4 463 aaPredicted RBP5.92□□□□□ -1.46
PCDH9-201ENST00000377861 TNNT3P45378 269 aaPredicted RBP5.92□□□□□ -1.46
PCDH9-201ENST00000377861 AMOTQ4VCS5 1084 aa5.92□□□□□ -1.46
PCDH9-201ENST00000377861 ZSCAN25Q6NSZ9 544 aa5.92□□□□□ -1.46
PCDH9-201ENST00000377861 LRPPRCP42704 1394 aaKnown RBP5.91□□□□□ -1.46
PCDH9-201ENST00000377861 CCDC83Q8IWF9 413 aa5.91□□□□□ -1.46
PCDH9-201ENST00000377861 HMG20BQ9P0W2 317 aa5.91□□□□□ -1.46
PCDH9-201ENST00000377861 CDKL5O76039 1030 aa5.91□□□□□ -1.46
PCDH9-201ENST00000377861 TRDNQ13061 729 aa5.91□□□□□ -1.46
PCDH9-201ENST00000377861 TRAF1Q13077 416 aa5.91□□□□□ -1.46
PCDH9-201ENST00000377861 ANKRD45Q5TZF3 282 aa5.91□□□□□ -1.46
PCDH9-201ENST00000377861 SMC5Q8IY18 1101 aa5.91□□□□□ -1.46
PCDH9-201ENST00000377861 RIPK4P57078 832 aa5.91□□□□□ -1.46
PCDH9-201ENST00000377861 PHAXQ9H814 394 aaKnown RBP5.91□□□□□ -1.46
PCDH9-201ENST00000377861 USP8P40818 1118 aa5.91□□□□□ -1.46
PCDH9-201ENST00000377861 CHD1LQ86WJ1 897 aa5.91□□□□□ -1.46
PCDH9-201ENST00000377861 FAM177A1Q8N128 213 aaPredicted RBP5.91□□□□□ -1.46
PCDH9-201ENST00000377861 SYNJ2O15056 1496 aa5.91□□□□□ -1.46
PCDH9-201ENST00000377861 KCNH5Q8NCM2 988 aa5.91□□□□□ -1.46
PCDH9-201ENST00000377861 WASF1Q92558 559 aa5.91□□□□□ -1.46
PCDH9-201ENST00000377861 SMTNL1A8MU46 457 aa5.91□□□□□ -1.46
PCDH9-201ENST00000377861 SNAPC4Q5SXM2 1469 aa5.91□□□□□ -1.46
PCDH9-201ENST00000377861 RARSP54136 660 aaKnown RBP5.9□□□□□ -1.46
PCDH9-201ENST00000377861 TRMT2AQ8IZ69 625 aaKnown RBP5.9□□□□□ -1.46
PCDH9-201ENST00000377861 ARHGEF12Q9NZN5 1544 aa5.9□□□□□ -1.46
PCDH9-201ENST00000377861 DUSP27Q5VZP5 1158 aa5.9□□□□□ -1.46
PCDH9-201ENST00000377861 KIF20AO95235 890 aa5.9□□□□□ -1.46
PCDH9-201ENST00000377861 SASS6Q6UVJ0 657 aa5.9□□□□□ -1.46
PCDH9-201ENST00000377861 RGS3P49796 1198 aa5.9□□□□□ -1.47
PCDH9-201ENST00000377861 SAFBQ15424 915 aaKnown RBP eCLIP5.9□□□□□ -1.47
PCDH9-201ENST00000377861 CERS3Q8IU89 383 aa5.9□□□□□ -1.47
PCDH9-201ENST00000377861 PARD3Q8TEW0 1356 aa5.9□□□□□ -1.47
PCDH9-201ENST00000377861 AOX1Q06278 1338 aa5.9□□□□□ -1.47
PCDH9-201ENST00000377861 GBP3Q9H0R5 595 aa5.9□□□□□ -1.47
PCDH9-201ENST00000377861 CBFA2T2O43439 604 aa5.9□□□□□ -1.47
PCDH9-201ENST00000377861 RTL1A6NKG5 1358 aa5.9□□□□□ -1.47
PCDH9-201ENST00000377861 CLUL1Q15846 466 aa5.89□□□□□ -1.47
PCDH9-201ENST00000377861 PPP4R3BQ5MIZ7 849 aa5.89□□□□□ -1.47
PCDH9-201ENST00000377861 CNTROBQ8N137 903 aa5.89□□□□□ -1.47
PCDH9-201ENST00000377861 DRC7Q8IY82 874 aa5.89□□□□□ -1.47
PCDH9-201ENST00000377861 PIK3C2GO75747 1445 aa5.89□□□□□ -1.47
PCDH9-201ENST00000377861 SART3Q15020 963 aaKnown RBP5.89□□□□□ -1.47
PCDH9-201ENST00000377861 EHBP1L1Q8N3D4 1523 aa5.89□□□□□ -1.47
PCDH9-201ENST00000377861 GLRX3O76003 335 aaKnown RBP5.89□□□□□ -1.47
PCDH9-201ENST00000377861 RDXP35241 583 aaKnown RBP5.89□□□□□ -1.47
PCDH9-201ENST00000377861 GRPEL1Q9HAV7 217 aa5.89□□□□□ -1.47
PCDH9-201ENST00000377861 TTC21BQ7Z4L5 1316 aa5.89□□□□□ -1.47
PCDH9-201ENST00000377861 LMNB2Q03252 620 aa5.89□□□□□ -1.47
PCDH9-201ENST00000377861 NKTRP30414 1462 aaKnown RBP5.89□□□□□ -1.47
PCDH9-201ENST00000377861 OS9Q13438 667 aaPredicted RBP5.89□□□□□ -1.47
PCDH9-201ENST00000377861 EXOC6Q8TAG9 804 aa5.89□□□□□ -1.47
PCDH9-201ENST00000377861 DDX12PQ92771 950 aa5.88□□□□□ -1.47
PCDH9-201ENST00000377861 TM6SF1Q9BZW5 370 aa5.88□□□□□ -1.47
PCDH9-201ENST00000377861 MNS1Q8NEH6 495 aa5.88□□□□□ -1.47
PCDH9-201ENST00000377861 PPP1R2P41236 205 aa5.88□□□□□ -1.47
PCDH9-201ENST00000377861 ZBTB4Q9P1Z0 1013 aaPredicted RBP5.88□□□□□ -1.47
PCDH9-201ENST00000377861 FAM135AQ9P2D6 1515 aa5.88□□□□□ -1.47
PCDH9-201ENST00000377861 TCOF1Q13428 1488 aaKnown RBP5.88□□□□□ -1.47
PCDH9-201ENST00000377861 MAGI1Q96QZ7 1491 aaPredicted RBP5.88□□□□□ -1.47
PCDH9-201ENST00000377861 TEX2Q8IWB9 1127 aa5.88□□□□□ -1.47
PCDH9-201ENST00000377861 HSP90B2PQ58FF3 399 aa5.88□□□□□ -1.47
PCDH9-201ENST00000377861 CCDC112Q8NEF3 446 aa5.88□□□□□ -1.47
PCDH9-201ENST00000377861 ZNF287Q9HBT7 754 aa5.88□□□□□ -1.47
PCDH9-201ENST00000377861 SPATA31E1Q6ZUB1 1445 aa5.88□□□□□ -1.47
PCDH9-201ENST00000377861 HMGB1P1B2RPK0 211 aaPredicted RBP5.88□□□□□ -1.47
PCDH9-201ENST00000377861 RBM27Q9P2N5 1060 aaKnown RBP5.88□□□□□ -1.47
PCDH9-201ENST00000377861 U3KPZ7 1027 aaPredicted RBP5.88□□□□□ -1.47
PCDH9-201ENST00000377861 FBXO3Q9UK99 471 aa5.88□□□□□ -1.47
PCDH9-201ENST00000377861 G3BP1Q13283 466 aaKnown RBP eCLIP5.88□□□□□ -1.47
PCDH9-201ENST00000377861 CEP131Q9UPN4 1083 aa5.88□□□□□ -1.47
PCDH9-201ENST00000377861 MTHFSP49914 203 aa5.87□□□□□ -1.47
PCDH9-201ENST00000377861 KRT85P78386 507 aa5.87□□□□□ -1.47
PCDH9-201ENST00000377861 CYP46A1Q9Y6A2 500 aa5.87□□□□□ -1.47
PCDH9-201ENST00000377861 RBM26Q5T8P6 1007 aaKnown RBP5.87□□□□□ -1.47
PCDH9-201ENST00000377861 H3BQV1 296 aa5.87□□□□□ -1.47
PCDH9-201ENST00000377861 EIF3DO15371 548 aaKnown RBP eCLIP5.87□□□□□ -1.47
PCDH9-201ENST00000377861 IFFO2Q5TF58 517 aa5.87□□□□□ -1.47
PCDH9-201ENST00000377861 KIF1BPQ96EK5 621 aa5.87□□□□□ -1.47
PCDH9-201ENST00000377861 AK7Q96M32 723 aa5.87□□□□□ -1.47
PCDH9-201ENST00000377861 TRIM29Q14134 588 aa5.87□□□□□ -1.47
PCDH9-201ENST00000377861 CCDC73Q6ZRK6 1079 aa5.87□□□□□ -1.47
PCDH9-201ENST00000377861 NUCB1Q02818 461 aa5.87□□□□□ -1.47
PCDH9-201ENST00000377861 ATP8B1O43520 1251 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms