RNA–Protein interactions for RNA: ENST00000373779.7

PTPRU-202, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-202ENST00000373779 ZNF608Q9ULD9 1512 aaPredicted RBP21.11■□□□□ 0.97
PTPRU-202ENST00000373779 SSH1Q8WYL5 1049 aa21.11■□□□□ 0.97
PTPRU-202ENST00000373779 OSCARQ8IYS5 282 aa21.1■□□□□ 0.97
PTPRU-202ENST00000373779 CHMP4CQ96CF2 233 aa21.1■□□□□ 0.97
PTPRU-202ENST00000373779 WDR62O43379 1518 aa21.1■□□□□ 0.97
PTPRU-202ENST00000373779 NEXNQ0ZGT2 675 aa21.1■□□□□ 0.97
PTPRU-202ENST00000373779 ADGRF5Q8IZF2 1346 aa21.09■□□□□ 0.97
PTPRU-202ENST00000373779 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.09■□□□□ 0.97
PTPRU-202ENST00000373779 SLC52A1Q9NWF4 448 aa21.08■□□□□ 0.97
PTPRU-202ENST00000373779 CCDC30Q5VVM6 783 aa21.08■□□□□ 0.97
PTPRU-202ENST00000373779 CCDC9Q9Y3X0 531 aaKnown RBP21.08■□□□□ 0.97
PTPRU-202ENST00000373779 ABCC11Q96J66 1382 aa21.08■□□□□ 0.97
PTPRU-202ENST00000373779 BICD2Q8TD16 824 aa21.08■□□□□ 0.96
PTPRU-202ENST00000373779 GNAI2P04899 355 aa21.08■□□□□ 0.96
PTPRU-202ENST00000373779 G3BP1Q13283 466 aaKnown RBP eCLIP21.08■□□□□ 0.96
PTPRU-202ENST00000373779 CCDC34Q96HJ3 373 aa21.08■□□□□ 0.96
PTPRU-202ENST00000373779 TSPY26PQ9H489 355 aa21.07■□□□□ 0.96
PTPRU-202ENST00000373779 SLC4A2P04920 1241 aa21.07■□□□□ 0.96
PTPRU-202ENST00000373779 CNTROBQ8N137 903 aa21.07■□□□□ 0.96
PTPRU-202ENST00000373779 ARHGEF12Q9NZN5 1544 aa21.07■□□□□ 0.96
PTPRU-202ENST00000373779 NFE2L2Q16236 605 aa21.07■□□□□ 0.96
PTPRU-202ENST00000373779 NUP160Q12769 1436 aa21.06■□□□□ 0.96
PTPRU-202ENST00000373779 ASXL1Q8IXJ9 1541 aa21.06■□□□□ 0.96
PTPRU-202ENST00000373779 NPHP1O15259 732 aa21.06■□□□□ 0.96
PTPRU-202ENST00000373779 ESPNB1AK53 854 aa21.06■□□□□ 0.96
PTPRU-202ENST00000373779 GAS2L2Q8NHY3 880 aa21.06■□□□□ 0.96
PTPRU-202ENST00000373779 DDX58O95786 925 aaKnown RBP21.06■□□□□ 0.96
PTPRU-202ENST00000373779 ALDH1L2Q3SY69 923 aa21.06■□□□□ 0.96
PTPRU-202ENST00000373779 AMER1Q5JTC6 1135 aaPredicted RBP21.05■□□□□ 0.96
PTPRU-202ENST00000373779 TEX14Q8IWB6 1497 aa21.05■□□□□ 0.96
PTPRU-202ENST00000373779 DNAJC5BQ9UF47 199 aa21.05■□□□□ 0.96
PTPRU-202ENST00000373779 DNMT1P26358 1616 aaKnown RBP21.05■□□□□ 0.96
PTPRU-202ENST00000373779 PZPP20742 1482 aa21.05■□□□□ 0.96
PTPRU-202ENST00000373779 C8orf34Q49A92 452 aa21.05■□□□□ 0.96
PTPRU-202ENST00000373779 SULT6B1Q6IMI4 303 aa21.05■□□□□ 0.96
PTPRU-202ENST00000373779 CCT4P50991 539 aaKnown RBP21.04■□□□□ 0.96
PTPRU-202ENST00000373779 SURF6O75683 361 aaKnown RBP21.04■□□□□ 0.96
PTPRU-202ENST00000373779 LETM1O95202 739 aaPredicted RBP21.04■□□□□ 0.96
PTPRU-202ENST00000373779 TBC1D32Q96NH3 1257 aa21.04■□□□□ 0.96
PTPRU-202ENST00000373779 TRIM27P14373 513 aa21.03■□□□□ 0.96
PTPRU-202ENST00000373779 MAP7D2Q96T17 732 aa21.03■□□□□ 0.96
PTPRU-202ENST00000373779 SASS6Q6UVJ0 657 aa21.03■□□□□ 0.96
PTPRU-202ENST00000373779 ZNF592Q92610 1267 aa21.03■□□□□ 0.96
PTPRU-202ENST00000373779 RTEL1-TNFRSF6BF6WH68 1400 aa21.02■□□□□ 0.96
PTPRU-202ENST00000373779 LRRCC1Q9C099 1032 aa21.02■□□□□ 0.95
PTPRU-202ENST00000373779 RPAP2Q8IXW5 612 aaPredicted RBP21.01■□□□□ 0.95
PTPRU-202ENST00000373779 CYB5RLQ6IPT4 315 aa21.01■□□□□ 0.95
PTPRU-202ENST00000373779 MTERF4Q7Z6M4 381 aaKnown RBP21.01■□□□□ 0.95
PTPRU-202ENST00000373779 KIAA0556O60303 1618 aa21.01■□□□□ 0.95
PTPRU-202ENST00000373779 CCDC27Q2M243 656 aa21■□□□□ 0.95
PTPRU-202ENST00000373779 TESK2Q96S53 571 aa21■□□□□ 0.95
PTPRU-202ENST00000373779 RNF123Q5XPI4 1314 aa21■□□□□ 0.95
PTPRU-202ENST00000373779 TRHP20396 242 aaPredicted RBP21■□□□□ 0.95
PTPRU-202ENST00000373779 EIF2AK4Q9P2K8 1649 aaKnown RBP21■□□□□ 0.95
PTPRU-202ENST00000373779 KIF21AQ7Z4S6 1674 aa20.99■□□□□ 0.95
PTPRU-202ENST00000373779 TXNDC2Q86VQ3 553 aa20.99■□□□□ 0.95
PTPRU-202ENST00000373779 CLASRPQ8N2M8 674 aaKnown RBP20.99■□□□□ 0.95
PTPRU-202ENST00000373779 ZNF692Q9BU19 519 aaPredicted RBP20.99■□□□□ 0.95
PTPRU-202ENST00000373779 UHRF1BP1Q6BDS2 1440 aa20.99■□□□□ 0.95
PTPRU-202ENST00000373779 ATP10BO94823 1461 aa20.99■□□□□ 0.95
PTPRU-202ENST00000373779 NSD2O96028 1365 aa20.99■□□□□ 0.95
PTPRU-202ENST00000373779 THUMPD2Q9BTF0 503 aaKnown RBP20.98■□□□□ 0.95
PTPRU-202ENST00000373779 PSMA5P28066 241 aa20.98■□□□□ 0.95
PTPRU-202ENST00000373779 TTC5Q8N0Z6 440 aa20.98■□□□□ 0.95
PTPRU-202ENST00000373779 PLEKHH1Q9ULM0 1364 aa20.98■□□□□ 0.95
PTPRU-202ENST00000373779 TPM3P06753 285 aa20.98■□□□□ 0.95
PTPRU-202ENST00000373779 NLRP6P59044 892 aa20.98■□□□□ 0.95
PTPRU-202ENST00000373779 LRRFIP1Q32MZ4 808 aaKnown RBP20.98■□□□□ 0.95
PTPRU-202ENST00000373779 IFT57Q9NWB7 429 aa20.97■□□□□ 0.95
PTPRU-202ENST00000373779 ADAMTS12P58397 1594 aa20.97■□□□□ 0.95
PTPRU-202ENST00000373779 FAM69CQ0P6D2 419 aa20.97■□□□□ 0.95
PTPRU-202ENST00000373779 WDR33Q9C0J8 1336 aaKnown RBP20.97■□□□□ 0.95
PTPRU-202ENST00000373779 RRS1Q15050 365 aaKnown RBP20.96■□□□□ 0.95
PTPRU-202ENST00000373779 TOMM22Q9NS69 142 aa20.96■□□□□ 0.95
PTPRU-202ENST00000373779 NOS1P29475 1434 aa20.96■□□□□ 0.95
PTPRU-202ENST00000373779 SHANK2Q9UPX8 1470 aa20.96■□□□□ 0.95
PTPRU-202ENST00000373779 PER1O15534 1290 aaPredicted RBP20.96■□□□□ 0.95
PTPRU-202ENST00000373779 GCC2Q8IWJ2 1684 aa20.96■□□□□ 0.95
PTPRU-202ENST00000373779 TNPO1Q92973 898 aaKnown RBP20.96■□□□□ 0.95
PTPRU-202ENST00000373779 DUOX2Q9NRD8 1548 aa20.95■□□□□ 0.95
PTPRU-202ENST00000373779 FIBPO43427 364 aa20.95■□□□□ 0.94
PTPRU-202ENST00000373779 NUTM2GQ5VZR2 741 aa20.95■□□□□ 0.94
PTPRU-202ENST00000373779 PCDHB15Q9Y5E8 787 aa20.95■□□□□ 0.94
PTPRU-202ENST00000373779 ADGRL1O94910 1474 aa20.95■□□□□ 0.94
PTPRU-202ENST00000373779 CCDC73Q6ZRK6 1079 aa20.94■□□□□ 0.94
PTPRU-202ENST00000373779 SRCIN1Q9C0H9 1055 aa20.94■□□□□ 0.94
PTPRU-202ENST00000373779 PSME1Q06323 249 aa20.94■□□□□ 0.94
PTPRU-202ENST00000373779 COL17A1Q9UMD9 1497 aaPredicted RBP20.94■□□□□ 0.94
PTPRU-202ENST00000373779 TULP1O00294 542 aaPredicted RBP20.94■□□□□ 0.94
PTPRU-202ENST00000373779 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.93■□□□□ 0.94
PTPRU-202ENST00000373779 SYCP2Q9BX26 1530 aa20.93■□□□□ 0.94
PTPRU-202ENST00000373779 FSD1Q9BTV5 496 aa20.93■□□□□ 0.94
PTPRU-202ENST00000373779 SAMD9Q5K651 1589 aa20.93■□□□□ 0.94
PTPRU-202ENST00000373779 PIK3C2GO75747 1445 aa20.93■□□□□ 0.94
PTPRU-202ENST00000373779 CPLX1O14810 134 aa20.92■□□□□ 0.94
PTPRU-202ENST00000373779 CPLX2Q6PUV4 134 aaKnown RBP20.92■□□□□ 0.94
PTPRU-202ENST00000373779 ZSCAN30Q86W11 494 aa20.92■□□□□ 0.94
PTPRU-202ENST00000373779 RAPGEF3O95398 923 aa20.92■□□□□ 0.94
PTPRU-202ENST00000373779 BMP2KLQ5H9B9 411 aa20.92■□□□□ 0.94
PTPRU-202ENST00000373779 RIC3Q7Z5B4 369 aa20.92■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms