RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 MYOM1P52179 1685 aa3.64□□□□□ -1.83
VPS54-202ENST00000354504 MAP3K9P80192 1104 aa3.64□□□□□ -1.83
VPS54-202ENST00000354504 V9GY48 417 aaPredicted RBP3.64□□□□□ -1.83
VPS54-202ENST00000354504 ABCC5O15440 1437 aa3.64□□□□□ -1.83
VPS54-202ENST00000354504 NEURL4Q96JN8 1562 aa3.64□□□□□ -1.83
VPS54-202ENST00000354504 EIF2AK4Q9P2K8 1649 aaKnown RBP3.64□□□□□ -1.83
VPS54-202ENST00000354504 IQGAP1P46940 1657 aa3.64□□□□□ -1.83
VPS54-202ENST00000354504 KDM5CP41229 1560 aa3.63□□□□□ -1.83
VPS54-202ENST00000354504 TSR3Q9UJK0 312 aaKnown RBP3.63□□□□□ -1.83
VPS54-202ENST00000354504 PIK3C2BO00750 1634 aa3.63□□□□□ -1.83
VPS54-202ENST00000354504 ANKK1Q8NFD2 765 aa3.63□□□□□ -1.83
VPS54-202ENST00000354504 FAM198AQ9UFP1 575 aa3.63□□□□□ -1.83
VPS54-202ENST00000354504 MYO5BQ9ULV0 1848 aa3.63□□□□□ -1.83
VPS54-202ENST00000354504 ZFYVE16Q7Z3T8 1539 aa3.63□□□□□ -1.83
VPS54-202ENST00000354504 DAPK1P53355 1430 aa3.63□□□□□ -1.83
VPS54-202ENST00000354504 RAB3GAP2Q9H2M9 1393 aa3.63□□□□□ -1.83
VPS54-202ENST00000354504 ADAM33Q9BZ11 813 aa3.63□□□□□ -1.83
VPS54-202ENST00000354504 GNPATO15228 680 aa3.62□□□□□ -1.83
VPS54-202ENST00000354504 MAP2K5Q13163 448 aa3.62□□□□□ -1.83
VPS54-202ENST00000354504 PACS2Q86VP3 889 aa3.62□□□□□ -1.83
VPS54-202ENST00000354504 MRPL50Q8N5N7 158 aaKnown RBP3.62□□□□□ -1.83
VPS54-202ENST00000354504 GIGYF2Q6Y7W6 1299 aaKnown RBP3.62□□□□□ -1.83
VPS54-202ENST00000354504 ZNF454Q8N9F8 522 aa3.62□□□□□ -1.83
VPS54-202ENST00000354504 PRG4Q92954 1404 aaPredicted RBP3.62□□□□□ -1.83
VPS54-202ENST00000354504 C6orf132Q5T0Z8 1188 aa3.62□□□□□ -1.83
VPS54-202ENST00000354504 CLUAP1Q96AJ1 413 aa3.62□□□□□ -1.83
VPS54-202ENST00000354504 TROQ12816 1431 aaPredicted RBP3.62□□□□□ -1.83
VPS54-202ENST00000354504 ERCC6Q03468 1493 aa3.61□□□□□ -1.83
VPS54-202ENST00000354504 AMHR2Q16671 573 aa3.61□□□□□ -1.83
VPS54-202ENST00000354504 POM121Q96HA1 1249 aa3.61□□□□□ -1.83
VPS54-202ENST00000354504 ABCA6Q8N139 1617 aa3.61□□□□□ -1.83
VPS54-202ENST00000354504 PPLO60437 1756 aa3.61□□□□□ -1.83
VPS54-202ENST00000354504 KIAA1210Q9ULL0 1709 aa3.61□□□□□ -1.83
VPS54-202ENST00000354504 ROCK1Q13464 1354 aa3.61□□□□□ -1.83
VPS54-202ENST00000354504 PROCA1Q8NCQ7 364 aaPredicted RBP3.61□□□□□ -1.83
VPS54-202ENST00000354504 MYO3AQ8NEV4 1616 aa3.61□□□□□ -1.83
VPS54-202ENST00000354504 ZNF518AQ6AHZ1 1483 aa3.61□□□□□ -1.83
VPS54-202ENST00000354504 SPATA31E1Q6ZUB1 1445 aa3.61□□□□□ -1.83
VPS54-202ENST00000354504 WNT2BQ93097 391 aa3.61□□□□□ -1.83
VPS54-202ENST00000354504 KCNK17Q96T54 332 aa3.61□□□□□ -1.83
VPS54-202ENST00000354504 PLA2R1Q13018 1463 aa3.6□□□□□ -1.83
VPS54-202ENST00000354504 UACAQ9BZF9 1416 aa3.6□□□□□ -1.83
VPS54-202ENST00000354504 SETD5Q9C0A6 1442 aa3.6□□□□□ -1.83
VPS54-202ENST00000354504 PRSS12P56730 875 aa3.6□□□□□ -1.83
VPS54-202ENST00000354504 PRDM15P57071 1507 aaPredicted RBP3.6□□□□□ -1.83
VPS54-202ENST00000354504 RIMBP3CA6NJZ7 1639 aa3.6□□□□□ -1.83
VPS54-202ENST00000354504 RIMBP3BA6NNM3 1639 aa3.6□□□□□ -1.83
VPS54-202ENST00000354504 RIMBP3Q9UFD9 1639 aa3.6□□□□□ -1.83
VPS54-202ENST00000354504 MADDQ8WXG6 1647 aa3.6□□□□□ -1.83
VPS54-202ENST00000354504 ARID3AQ99856 593 aa3.6□□□□□ -1.83
VPS54-202ENST00000354504 SYCP2Q9BX26 1530 aa3.6□□□□□ -1.83
VPS54-202ENST00000354504 COL9A1P20849 921 aa3.59□□□□□ -1.83
VPS54-202ENST00000354504 PSEN2P49810 448 aa3.59□□□□□ -1.83
VPS54-202ENST00000354504 MDM2Q00987 491 aaPredicted RBP3.59□□□□□ -1.83
VPS54-202ENST00000354504 TET3O43151 1660 aa3.59□□□□□ -1.83
VPS54-202ENST00000354504 GLI2P10070 1586 aa3.59□□□□□ -1.83
VPS54-202ENST00000354504 ATP10AO60312 1499 aa3.59□□□□□ -1.83
VPS54-202ENST00000354504 TTLL12Q14166 644 aaPredicted RBP3.59□□□□□ -1.83
VPS54-202ENST00000354504 CLTCL1P53675 1640 aa3.59□□□□□ -1.83
VPS54-202ENST00000354504 NCOA1Q15788 1441 aa3.59□□□□□ -1.83
VPS54-202ENST00000354504 CLSPNQ9HAW4 1339 aa3.59□□□□□ -1.83
VPS54-202ENST00000354504 NRG2O14511 850 aaPredicted RBP3.59□□□□□ -1.84
VPS54-202ENST00000354504 MAP3K7O43318 606 aa3.59□□□□□ -1.84
VPS54-202ENST00000354504 MINK1Q8N4C8 1332 aaPredicted RBP3.59□□□□□ -1.84
VPS54-202ENST00000354504 NBPF26B4DH59 902 aa3.58□□□□□ -1.84
VPS54-202ENST00000354504 HIC1Q14526 733 aa3.58□□□□□ -1.84
VPS54-202ENST00000354504 PADI6Q6TGC4 694 aa3.58□□□□□ -1.84
VPS54-202ENST00000354504 KCNC4Q03721 635 aa3.58□□□□□ -1.84
VPS54-202ENST00000354504 IL21Q9HBE4 155 aa3.58□□□□□ -1.84
VPS54-202ENST00000354504 RPRD2Q5VT52 1461 aaKnown RBP3.58□□□□□ -1.84
VPS54-202ENST00000354504 METTL3Q86U44 580 aaKnown RBP3.58□□□□□ -1.84
VPS54-202ENST00000354504 DIP2BQ9P265 1576 aa3.58□□□□□ -1.84
VPS54-202ENST00000354504 HECW2Q9P2P5 1572 aa3.57□□□□□ -1.84
VPS54-202ENST00000354504 PRR20EP86478 221 aa3.57□□□□□ -1.84
VPS54-202ENST00000354504 PRR20CP86479 221 aa3.57□□□□□ -1.84
VPS54-202ENST00000354504 PRR20DP86480 221 aa3.57□□□□□ -1.84
VPS54-202ENST00000354504 PRR20BP86481 221 aa3.57□□□□□ -1.84
VPS54-202ENST00000354504 PRR20AP86496 221 aa3.57□□□□□ -1.84
VPS54-202ENST00000354504 HLA-CQ95604 372 aa3.57□□□□□ -1.84
VPS54-202ENST00000354504 GOPCQ9HD26 462 aa3.57□□□□□ -1.84
VPS54-202ENST00000354504 POLR3EQ9NVU0 708 aa3.57□□□□□ -1.84
VPS54-202ENST00000354504 SALL2Q9Y467 1007 aaPredicted RBP3.57□□□□□ -1.84
VPS54-202ENST00000354504 GOLGA8CPA6NN73 597 aa3.57□□□□□ -1.84
VPS54-202ENST00000354504 SMAPO00193 183 aa3.57□□□□□ -1.84
VPS54-202ENST00000354504 LMTK2Q8IWU2 1503 aa3.57□□□□□ -1.84
VPS54-202ENST00000354504 REREQ9P2R6 1566 aa3.57□□□□□ -1.84
VPS54-202ENST00000354504 ANKRD30BQ9BXX2 1392 aa3.57□□□□□ -1.84
VPS54-202ENST00000354504 ZMYM4Q5VZL5 1548 aa3.56□□□□□ -1.84
VPS54-202ENST00000354504 FAM135AQ9P2D6 1515 aa3.56□□□□□ -1.84
VPS54-202ENST00000354504 FCHSD2O94868 740 aa3.56□□□□□ -1.84
VPS54-202ENST00000354504 EYA1Q99502 592 aa3.56□□□□□ -1.84
VPS54-202ENST00000354504 CAMSAP1Q5T5Y3 1602 aa3.56□□□□□ -1.84
VPS54-202ENST00000354504 WDR7Q9Y4E6 1490 aa3.56□□□□□ -1.84
VPS54-202ENST00000354504 DUOX2Q9NRD8 1548 aa3.56□□□□□ -1.84
VPS54-202ENST00000354504 DIP2CQ9Y2E4 1556 aa3.56□□□□□ -1.84
VPS54-202ENST00000354504 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP3.56□□□□□ -1.84
VPS54-202ENST00000354504 SLF2Q8IX21 1173 aa3.56□□□□□ -1.84
VPS54-202ENST00000354504 TSKSQ9UJT2 592 aa3.56□□□□□ -1.84
VPS54-202ENST00000354504 UHRF1BP1Q6BDS2 1440 aa3.56□□□□□ -1.84
VPS54-202ENST00000354504 SYNMO15061 1565 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms