RNA–Protein interactions for RNA: ENST00000330374.6

VMA21-201, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VMA21, Length 4,717 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-201ENST00000330374 ZNF692Q9BU19 519 aaPredicted RBP9.85□□□□□ -0.83
VMA21-201ENST00000330374 DDX19BQ9UMR2 479 aa9.85□□□□□ -0.83
VMA21-201ENST00000330374 TTC37Q6PGP7 1564 aa9.85□□□□□ -0.83
VMA21-201ENST00000330374 ELL2O00472 640 aaPredicted RBP9.84□□□□□ -0.83
VMA21-201ENST00000330374 RRP9O43818 475 aaKnown RBP9.84□□□□□ -0.83
VMA21-201ENST00000330374 ATF7IPQ6VMQ6 1270 aa9.84□□□□□ -0.83
VMA21-201ENST00000330374 MAST1Q9Y2H9 1570 aa9.84□□□□□ -0.83
VMA21-201ENST00000330374 IQGAP3Q86VI3 1631 aa9.84□□□□□ -0.83
VMA21-201ENST00000330374 TRAPPC8Q9Y2L5 1435 aa9.84□□□□□ -0.83
VMA21-201ENST00000330374 DDX49Q9Y6V7 483 aaKnown RBP9.84□□□□□ -0.83
VMA21-201ENST00000330374 PREX2Q70Z35 1606 aa9.83□□□□□ -0.84
VMA21-201ENST00000330374 RNF17Q9BXT8 1623 aaKnown RBP9.83□□□□□ -0.84
VMA21-201ENST00000330374 MYOM1P52179 1685 aa9.83□□□□□ -0.84
VMA21-201ENST00000330374 AAMPQ13685 434 aa9.83□□□□□ -0.84
VMA21-201ENST00000330374 KIAA1211Q6ZU35 1233 aa9.83□□□□□ -0.84
VMA21-201ENST00000330374 ANP32BQ92688 251 aaKnown RBP9.83□□□□□ -0.84
VMA21-201ENST00000330374 GGNBP2Q9H3C7 697 aa9.83□□□□□ -0.84
VMA21-201ENST00000330374 KDM5AP29375 1690 aaKnown RBP9.83□□□□□ -0.84
VMA21-201ENST00000330374 IQGAP1P46940 1657 aa9.83□□□□□ -0.84
VMA21-201ENST00000330374 ATF5Q9Y2D1 282 aaPredicted RBP9.83□□□□□ -0.84
VMA21-201ENST00000330374 DUOX2Q9NRD8 1548 aa9.83□□□□□ -0.84
VMA21-201ENST00000330374 RTEL1-TNFRSF6BF6WH68 1400 aa9.83□□□□□ -0.84
VMA21-201ENST00000330374 CABP2Q9NPB3 220 aa9.82□□□□□ -0.84
VMA21-201ENST00000330374 UGGT1Q9NYU2 1555 aa9.82□□□□□ -0.84
VMA21-201ENST00000330374 ATP10AO60312 1499 aa9.82□□□□□ -0.84
VMA21-201ENST00000330374 NASPP49321 788 aaPredicted RBP9.82□□□□□ -0.84
VMA21-201ENST00000330374 STK24Q9Y6E0 443 aa9.82□□□□□ -0.84
VMA21-201ENST00000330374 RAD21O60216 631 aa9.82□□□□□ -0.84
VMA21-201ENST00000330374 FOXD4L5Q5VV16 416 aaPredicted RBP9.82□□□□□ -0.84
VMA21-201ENST00000330374 FOXD4L4Q8WXT5 416 aaPredicted RBP9.82□□□□□ -0.84
VMA21-201ENST00000330374 RIPK4P57078 832 aa9.81□□□□□ -0.84
VMA21-201ENST00000330374 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.81□□□□□ -0.84
VMA21-201ENST00000330374 HDAC1Q13547 482 aaPredicted RBP9.81□□□□□ -0.84
VMA21-201ENST00000330374 CHD1LQ86WJ1 897 aa9.81□□□□□ -0.84
VMA21-201ENST00000330374 GAS2L2Q8NHY3 880 aa9.81□□□□□ -0.84
VMA21-201ENST00000330374 STK26Q9P289 416 aa9.81□□□□□ -0.84
VMA21-201ENST00000330374 MCTP1Q6DN14 999 aa9.81□□□□□ -0.84
VMA21-201ENST00000330374 MSNP26038 577 aaKnown RBP9.81□□□□□ -0.84
VMA21-201ENST00000330374 TMPOP42166 694 aaKnown RBP9.81□□□□□ -0.84
VMA21-201ENST00000330374 GOLGA6L22H0YM25 854 aa9.8□□□□□ -0.84
VMA21-201ENST00000330374 SMC5Q8IY18 1101 aa9.8□□□□□ -0.84
VMA21-201ENST00000330374 SCAPERQ9BY12 1400 aa9.8□□□□□ -0.84
VMA21-201ENST00000330374 RAB3GAP1Q15042 981 aa9.8□□□□□ -0.84
VMA21-201ENST00000330374 KANK1Q14678 1352 aa9.8□□□□□ -0.84
VMA21-201ENST00000330374 CAVIN1Q6NZI2 390 aaKnown RBP9.8□□□□□ -0.84
VMA21-201ENST00000330374 FBLN1P23142 703 aa9.8□□□□□ -0.84
VMA21-201ENST00000330374 THUMPD2Q9BTF0 503 aaKnown RBP9.8□□□□□ -0.84
VMA21-201ENST00000330374 FAM13BQ9NYF5 915 aa9.8□□□□□ -0.84
VMA21-201ENST00000330374 RBM25P49756 843 aaKnown RBP9.79□□□□□ -0.84
VMA21-201ENST00000330374 NUCB1Q02818 461 aa9.79□□□□□ -0.84
VMA21-201ENST00000330374 ZBTB40Q9NUA8 1239 aa9.79□□□□□ -0.84
VMA21-201ENST00000330374 CLTCL1P53675 1640 aa9.79□□□□□ -0.84
VMA21-201ENST00000330374 K7ELQ4 463 aaPredicted RBP9.79□□□□□ -0.84
VMA21-201ENST00000330374 TBC1D9Q6ZT07 1266 aa9.79□□□□□ -0.84
VMA21-201ENST00000330374 CHAMP1Q96JM3 812 aa9.79□□□□□ -0.84
VMA21-201ENST00000330374 R3HCC1Q9Y3T6 440 aaKnown RBP9.79□□□□□ -0.84
VMA21-201ENST00000330374 CEP152O94986 1710 aa9.79□□□□□ -0.84
VMA21-201ENST00000330374 PTPRTO14522 1441 aa9.79□□□□□ -0.84
VMA21-201ENST00000330374 KCTD17Q8N5Z5 321 aa9.78□□□□□ -0.84
VMA21-201ENST00000330374 TRIM35Q9UPQ4 493 aa9.78□□□□□ -0.84
VMA21-201ENST00000330374 PLXNC1O60486 1568 aa9.78□□□□□ -0.84
VMA21-201ENST00000330374 SRPK2P78362 688 aaKnown RBP9.78□□□□□ -0.84
VMA21-201ENST00000330374 SKOR2Q2VWA4 1001 aaPredicted RBP9.78□□□□□ -0.84
VMA21-201ENST00000330374 IPO8O15397 1037 aaKnown RBP9.78□□□□□ -0.84
VMA21-201ENST00000330374 CAPN15O75808 1086 aa9.78□□□□□ -0.84
VMA21-201ENST00000330374 AK9Q5TCS8 1911 aa9.78□□□□□ -0.84
VMA21-201ENST00000330374 CCDC27Q2M243 656 aa9.78□□□□□ -0.84
VMA21-201ENST00000330374 GGT6Q6P531 493 aa9.77□□□□□ -0.84
VMA21-201ENST00000330374 KIF2CQ99661 725 aa9.77□□□□□ -0.84
VMA21-201ENST00000330374 NOS1P29475 1434 aa9.77□□□□□ -0.85
VMA21-201ENST00000330374 DDIT3P35638 169 aa9.77□□□□□ -0.85
VMA21-201ENST00000330374 SNX21Q969T3 373 aa9.77□□□□□ -0.85
VMA21-201ENST00000330374 CFAP65Q6ZU64 1925 aaKnown RBP9.77□□□□□ -0.85
VMA21-201ENST00000330374 PKP1Q13835 747 aa9.77□□□□□ -0.85
VMA21-201ENST00000330374 STAC3Q96MF2 364 aa9.77□□□□□ -0.85
VMA21-201ENST00000330374 RYDENQ9NUL5 291 aaKnown RBP9.77□□□□□ -0.85
VMA21-201ENST00000330374 BAG4O95429 457 aaKnown RBP9.77□□□□□ -0.85
VMA21-201ENST00000330374 XPCQ01831 940 aaPredicted RBP9.77□□□□□ -0.85
VMA21-201ENST00000330374 CCDC173Q0VFZ6 552 aa9.77□□□□□ -0.85
VMA21-201ENST00000330374 MPNDQ8N594 471 aa9.77□□□□□ -0.85
VMA21-201ENST00000330374 RBM27Q9P2N5 1060 aaKnown RBP9.77□□□□□ -0.85
VMA21-201ENST00000330374 CALD1Q05682 793 aaKnown RBP9.76□□□□□ -0.85
VMA21-201ENST00000330374 ZSCAN30Q86W11 494 aa9.76□□□□□ -0.85
VMA21-201ENST00000330374 IQSEC2Q5JU85 1478 aa9.76□□□□□ -0.85
VMA21-201ENST00000330374 FOXD4L6Q3SYB3 417 aaPredicted RBP9.76□□□□□ -0.85
VMA21-201ENST00000330374 FOXD4L3Q6VB84 417 aaPredicted RBP9.76□□□□□ -0.85
VMA21-201ENST00000330374 SPHKAPQ2M3C7 1700 aa9.76□□□□□ -0.85
VMA21-201ENST00000330374 TRPM2O94759 1503 aa9.76□□□□□ -0.85
VMA21-201ENST00000330374 HMOX1P09601 288 aa9.75□□□□□ -0.85
VMA21-201ENST00000330374 ISY1Q9ULR0 285 aaKnown RBP9.75□□□□□ -0.85
VMA21-201ENST00000330374 ZMYM3Q14202 1370 aa9.75□□□□□ -0.85
VMA21-201ENST00000330374 TPM2P07951 284 aa9.75□□□□□ -0.85
VMA21-201ENST00000330374 ZNF518AQ6AHZ1 1483 aa9.75□□□□□ -0.85
VMA21-201ENST00000330374 PRPF40AO75400 957 aaKnown RBP9.75□□□□□ -0.85
VMA21-201ENST00000330374 ATAD2Q6PL18 1390 aa9.75□□□□□ -0.85
VMA21-201ENST00000330374 KIF16BQ96L93 1317 aa9.75□□□□□ -0.85
VMA21-201ENST00000330374 BMP2KLQ5H9B9 411 aa9.75□□□□□ -0.85
VMA21-201ENST00000330374 RNF214Q8ND24 703 aa9.75□□□□□ -0.85
VMA21-201ENST00000330374 CCDC97Q96F63 343 aaPredicted RBP9.74□□□□□ -0.85
VMA21-201ENST00000330374 SHPRHQ149N8 1683 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms