RNA–Protein interactions for RNA: ENST00000318266.9

PTPRA-202, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTPRA, Length 3,219 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-202ENST00000318266 AAMPQ13685 434 aa12.08□□□□□ -0.48
PTPRA-202ENST00000318266 SSH1Q8WYL5 1049 aa12.08□□□□□ -0.48
PTPRA-202ENST00000318266 TRAK1Q9UPV9 953 aa12.08□□□□□ -0.48
PTPRA-202ENST00000318266 NSD3Q9BZ95 1437 aa12.08□□□□□ -0.48
PTPRA-202ENST00000318266 ADGRF5Q8IZF2 1346 aa12.07□□□□□ -0.48
PTPRA-202ENST00000318266 U2SURPO15042 1029 aaKnown RBP12.07□□□□□ -0.48
PTPRA-202ENST00000318266 POLR3AO14802 1390 aaPredicted RBP12.07□□□□□ -0.48
PTPRA-202ENST00000318266 TMEM57Q8N5G2 664 aa12.07□□□□□ -0.48
PTPRA-202ENST00000318266 NOB1Q9ULX3 412 aaKnown RBP12.07□□□□□ -0.48
PTPRA-202ENST00000318266 DDX49Q9Y6V7 483 aaKnown RBP12.07□□□□□ -0.48
PTPRA-202ENST00000318266 RNF17Q9BXT8 1623 aaKnown RBP12.07□□□□□ -0.48
PTPRA-202ENST00000318266 ABCC1P33527 1531 aa12.07□□□□□ -0.48
PTPRA-202ENST00000318266 ANP32BQ92688 251 aaKnown RBP12.07□□□□□ -0.48
PTPRA-202ENST00000318266 ABCA6Q8N139 1617 aa12.06□□□□□ -0.48
PTPRA-202ENST00000318266 ZBTB7CA1YPR0 619 aa12.06□□□□□ -0.48
PTPRA-202ENST00000318266 FAM13BQ9NYF5 915 aa12.06□□□□□ -0.48
PTPRA-202ENST00000318266 MSNP26038 577 aaKnown RBP12.06□□□□□ -0.48
PTPRA-202ENST00000318266 RAB3GAP1Q15042 981 aa12.06□□□□□ -0.48
PTPRA-202ENST00000318266 UNC13BO14795 1591 aa12.06□□□□□ -0.48
PTPRA-202ENST00000318266 MYOM1P52179 1685 aa12.06□□□□□ -0.48
PTPRA-202ENST00000318266 DDIT3P35638 169 aa12.05□□□□□ -0.48
PTPRA-202ENST00000318266 CFAP53Q96M91 514 aa12.05□□□□□ -0.48
PTPRA-202ENST00000318266 C1orf115Q9H7X2 142 aa12.05□□□□□ -0.48
PTPRA-202ENST00000318266 DDX19BQ9UMR2 479 aa12.05□□□□□ -0.48
PTPRA-202ENST00000318266 TPM2P07951 284 aa12.05□□□□□ -0.48
PTPRA-202ENST00000318266 ERVK-7P63135 1459 aa12.05□□□□□ -0.48
PTPRA-202ENST00000318266 CDC42BPBQ9Y5S2 1711 aa12.05□□□□□ -0.48
PTPRA-202ENST00000318266 PLXNC1O60486 1568 aa12.05□□□□□ -0.48
PTPRA-202ENST00000318266 ATF7IPQ6VMQ6 1270 aa12.05□□□□□ -0.48
PTPRA-202ENST00000318266 SMC5Q8IY18 1101 aa12.05□□□□□ -0.48
PTPRA-202ENST00000318266 ISY1Q9ULR0 285 aaKnown RBP12.05□□□□□ -0.48
PTPRA-202ENST00000318266 R3HCC1Q9Y3T6 440 aaKnown RBP12.05□□□□□ -0.48
PTPRA-202ENST00000318266 IQGAP1P46940 1657 aa12.04□□□□□ -0.48
PTPRA-202ENST00000318266 ZMYM3Q14202 1370 aa12.04□□□□□ -0.48
PTPRA-202ENST00000318266 ANKRD45Q5TZF3 282 aa12.04□□□□□ -0.48
PTPRA-202ENST00000318266 GAS2L2Q8NHY3 880 aa12.04□□□□□ -0.48
PTPRA-202ENST00000318266 IQGAP3Q86VI3 1631 aa12.04□□□□□ -0.48
PTPRA-202ENST00000318266 RBM25P49756 843 aaKnown RBP12.04□□□□□ -0.48
PTPRA-202ENST00000318266 HDAC1Q13547 482 aaPredicted RBP12.04□□□□□ -0.48
PTPRA-202ENST00000318266 AFAP1Q8N556 730 aa12.04□□□□□ -0.48
PTPRA-202ENST00000318266 PHF23Q9BUL5 403 aaPredicted RBP12.04□□□□□ -0.48
PTPRA-202ENST00000318266 ZSCAN30Q86W11 494 aa12.03□□□□□ -0.48
PTPRA-202ENST00000318266 PDCL3Q9H2J4 239 aa12.03□□□□□ -0.48
PTPRA-202ENST00000318266 CCDC173Q0VFZ6 552 aa12.03□□□□□ -0.48
PTPRA-202ENST00000318266 SKOR2Q2VWA4 1001 aaPredicted RBP12.03□□□□□ -0.48
PTPRA-202ENST00000318266 GOLGA6L22H0YM25 854 aa12.03□□□□□ -0.48
PTPRA-202ENST00000318266 CAVIN1Q6NZI2 390 aaKnown RBP12.03□□□□□ -0.48
PTPRA-202ENST00000318266 MYO3AQ8NEV4 1616 aa12.03□□□□□ -0.48
PTPRA-202ENST00000318266 MAST1Q9Y2H9 1570 aa12.02□□□□□ -0.48
PTPRA-202ENST00000318266 MCTP1Q6DN14 999 aa12.02□□□□□ -0.48
PTPRA-202ENST00000318266 TMEM132EQ6IEE7 984 aa12.02□□□□□ -0.48
PTPRA-202ENST00000318266 SNX21Q969T3 373 aa12.02□□□□□ -0.48
PTPRA-202ENST00000318266 KIF2CQ99661 725 aa12.02□□□□□ -0.48
PTPRA-202ENST00000318266 KDM5AP29375 1690 aaKnown RBP12.02□□□□□ -0.49
PTPRA-202ENST00000318266 K7ELQ4 463 aaPredicted RBP12.02□□□□□ -0.49
PTPRA-202ENST00000318266 XPCQ01831 940 aaPredicted RBP12.02□□□□□ -0.49
PTPRA-202ENST00000318266 CHD1LQ86WJ1 897 aa12.02□□□□□ -0.49
PTPRA-202ENST00000318266 SAFB2Q14151 953 aaKnown RBP eCLIP12.01□□□□□ -0.49
PTPRA-202ENST00000318266 NCOA3Q9Y6Q9 1424 aa12.01□□□□□ -0.49
PTPRA-202ENST00000318266 CIZ1Q9ULV3 898 aaPredicted RBP12.01□□□□□ -0.49
PTPRA-202ENST00000318266 NUCB1Q02818 461 aa12.01□□□□□ -0.49
PTPRA-202ENST00000318266 ZBTB40Q9NUA8 1239 aa12.01□□□□□ -0.49
PTPRA-202ENST00000318266 RIPK4P57078 832 aa12□□□□□ -0.49
PTPRA-202ENST00000318266 CHAMP1Q96JM3 812 aa12□□□□□ -0.49
PTPRA-202ENST00000318266 CAMSAP1Q5T5Y3 1602 aa12□□□□□ -0.49
PTPRA-202ENST00000318266 KIDINS220Q9ULH0 1771 aa12□□□□□ -0.49
PTPRA-202ENST00000318266 BAG4O95429 457 aaKnown RBP12□□□□□ -0.49
PTPRA-202ENST00000318266 TBC1D9Q6ZT07 1266 aa12□□□□□ -0.49
PTPRA-202ENST00000318266 DUOX2Q9NRD8 1548 aa12□□□□□ -0.49
PTPRA-202ENST00000318266 KIF3BO15066 747 aa11.99□□□□□ -0.49
PTPRA-202ENST00000318266 DEPDC5O75140 1603 aa11.99□□□□□ -0.49
PTPRA-202ENST00000318266 SPAG9O60271 1321 aaKnown RBP11.99□□□□□ -0.49
PTPRA-202ENST00000318266 HSPA2P54652 639 aa11.99□□□□□ -0.49
PTPRA-202ENST00000318266 PKP1Q13835 747 aa11.99□□□□□ -0.49
PTPRA-202ENST00000318266 NUTM2DQ5VT03 806 aaPredicted RBP11.99□□□□□ -0.49
PTPRA-202ENST00000318266 FOXD4L5Q5VV16 416 aaPredicted RBP11.99□□□□□ -0.49
PTPRA-202ENST00000318266 FOXD4L4Q8WXT5 416 aaPredicted RBP11.99□□□□□ -0.49
PTPRA-202ENST00000318266 CEP170BQ9Y4F5 1589 aaPredicted RBP11.99□□□□□ -0.49
PTPRA-202ENST00000318266 OFD1O75665 1012 aa11.99□□□□□ -0.49
PTPRA-202ENST00000318266 CCDC27Q2M243 656 aa11.99□□□□□ -0.49
PTPRA-202ENST00000318266 CEP152O94986 1710 aa11.98□□□□□ -0.49
PTPRA-202ENST00000318266 ELL2O00472 640 aaPredicted RBP11.98□□□□□ -0.49
PTPRA-202ENST00000318266 PPP1R9BQ96SB3 815 aa11.98□□□□□ -0.49
PTPRA-202ENST00000318266 RBM27Q9P2N5 1060 aaKnown RBP11.98□□□□□ -0.49
PTPRA-202ENST00000318266 TMPOP42166 694 aaKnown RBP11.98□□□□□ -0.49
PTPRA-202ENST00000318266 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.98□□□□□ -0.49
PTPRA-202ENST00000318266 ILDR2Q71H61 639 aa11.98□□□□□ -0.49
PTPRA-202ENST00000318266 UGGT1Q9NYU2 1555 aa11.98□□□□□ -0.49
PTPRA-202ENST00000318266 INO80Q9ULG1 1556 aaPredicted RBP11.98□□□□□ -0.49
PTPRA-202ENST00000318266 CALD1Q05682 793 aaKnown RBP11.98□□□□□ -0.49
PTPRA-202ENST00000318266 KLHL40Q2TBA0 621 aa11.98□□□□□ -0.49
PTPRA-202ENST00000318266 MED1Q15648 1581 aaPredicted RBP11.97□□□□□ -0.49
PTPRA-202ENST00000318266 BMP2KLQ5H9B9 411 aa11.97□□□□□ -0.49
PTPRA-202ENST00000318266 RBSNQ9H1K0 784 aa11.97□□□□□ -0.49
PTPRA-202ENST00000318266 GGNBP2Q9H3C7 697 aa11.97□□□□□ -0.49
PTPRA-202ENST00000318266 TRIM35Q9UPQ4 493 aa11.97□□□□□ -0.49
PTPRA-202ENST00000318266 A2ML1A8K2U0 1454 aa11.96□□□□□ -0.49
PTPRA-202ENST00000318266 UQCRHLA0A096LP55 91 aa11.96□□□□□ -0.49
PTPRA-202ENST00000318266 UQCRHP07919 91 aa11.96□□□□□ -0.49
PTPRA-202ENST00000318266 ZSCAN23Q3MJ62 389 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms